Wall clock time and date at job start Tue Mar 31 2020 20:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47529 * 2 1 4 4 C 1.53004 * 109.47303 * 239.99649 * 2 1 3 5 5 N 1.46503 * 109.46832 * 120.00206 * 2 1 3 6 6 C 1.34806 * 126.60020 * 74.99927 * 5 2 1 7 7 C 1.36591 * 106.84219 * 179.97438 * 6 5 2 8 8 C 1.47528 * 125.77028 * 179.97438 * 7 6 5 9 9 O 1.21597 * 120.00185 * 0.02562 * 8 7 6 10 10 N 1.34776 * 119.99647 * 179.97438 * 8 7 6 11 11 C 1.46508 * 119.99573 * 174.90522 * 10 8 7 12 12 C 1.52998 * 110.01736 * 65.17568 * 11 10 8 13 13 N 1.46507 * 109.47131 * 55.17115 * 12 11 10 14 14 C 1.36930 * 119.99934 * 174.90479 * 13 12 11 15 15 H 1.07998 * 120.00389 * 0.02562 * 14 13 12 16 16 C 1.38818 * 120.00140 * 180.02562 * 14 13 12 17 17 N 1.31622 * 119.99604 * 359.72829 * 16 14 13 18 18 Si 1.86799 * 120.00157 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47046 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47004 * 120.00099 * 18 16 14 21 21 H 1.48495 * 109.46844 * 240.00110 * 18 16 14 22 22 C 1.54260 * 110.07059 * 186.59087 * 11 10 8 23 23 C 1.54894 * 104.19267 * 95.69800 * 22 11 10 24 24 C 1.54888 * 102.75119 * 37.94199 * 23 22 11 25 25 C 1.53874 * 110.03210 * 303.78295 * 11 10 8 26 26 N 1.34396 * 108.45823 * 0.23794 * 7 6 5 27 27 N 1.28763 * 109.52309 * 359.59212 * 26 7 6 28 28 H 1.08997 * 109.46747 * 300.00347 * 1 2 3 29 29 H 1.09006 * 109.46569 * 60.00096 * 1 2 3 30 30 H 1.08998 * 109.46890 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47278 * 179.97438 * 3 2 1 32 32 H 1.09007 * 109.46722 * 299.99931 * 3 2 1 33 33 H 1.08998 * 109.46991 * 59.99689 * 3 2 1 34 34 H 1.08998 * 109.46952 * 300.00584 * 4 2 1 35 35 H 1.08997 * 109.46915 * 59.99987 * 4 2 1 36 36 H 1.09000 * 109.47416 * 180.02562 * 4 2 1 37 37 H 1.08009 * 126.57652 * 359.97438 * 6 5 2 38 38 H 0.96993 * 120.00337 * 354.91058 * 10 8 7 39 39 H 1.09002 * 109.47135 * 295.17411 * 12 11 10 40 40 H 1.08997 * 109.47285 * 175.17138 * 12 11 10 41 41 H 0.96993 * 119.99547 * 354.91488 * 13 12 11 42 42 H 0.96998 * 119.99966 * 179.97438 * 17 16 14 43 43 H 1.08996 * 110.48620 * 214.37091 * 22 11 10 44 44 H 1.08997 * 110.48801 * 337.02131 * 22 11 10 45 45 H 1.08999 * 110.75950 * 279.62334 * 23 22 11 46 46 H 1.09004 * 110.75460 * 156.25838 * 23 22 11 47 47 H 1.08998 * 110.48761 * 203.37808 * 24 23 22 48 48 H 1.09002 * 110.48754 * 80.72967 * 24 23 22 49 49 H 1.09000 * 110.03407 * 359.95562 * 25 11 10 50 50 H 1.09005 * 110.02989 * 121.38262 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 2.0183 -0.6907 1.1962 6 6 2.0221 -2.0216 1.4106 7 6 2.5637 -2.2215 2.6485 8 6 2.7650 -3.5294 3.3007 9 8 2.4372 -4.5510 2.7286 10 7 3.3132 -3.5918 4.5304 11 6 3.4109 -4.8784 5.2243 12 6 4.3596 -5.8106 4.4681 13 7 5.6567 -5.1516 4.2952 14 6 6.7028 -5.8355 3.7358 15 1 6.5718 -6.8605 3.4218 16 6 7.9320 -5.2114 3.5725 17 7 8.0903 -3.9605 3.9503 18 14 9.3590 -6.1441 2.8088 19 1 8.9229 -7.5216 2.4656 20 1 9.8044 -5.4451 1.5767 21 1 10.4836 -6.2069 3.7764 22 6 3.9170 -4.6654 6.6658 23 6 2.6248 -4.6117 7.5181 24 6 1.7267 -5.6792 6.8449 25 6 2.0183 -5.5230 5.3381 26 7 2.8769 -1.0249 3.1742 27 7 2.5722 -0.0944 2.3380 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1301 1.4424 0.0005 32 1 1.6768 1.9563 -0.8901 33 1 1.6768 1.9563 0.8899 34 1 1.6767 -1.7490 -1.2492 35 1 1.6767 -0.2076 -2.1392 36 1 3.1301 -0.7217 -1.2490 37 1 1.6652 -2.7836 0.7334 38 1 3.6429 -2.7850 4.9560 39 1 3.9374 -6.0437 3.4906 40 1 4.4928 -6.7316 5.0355 41 1 5.7743 -4.2311 4.5770 42 1 8.9492 -3.5245 3.8365 43 1 4.5448 -5.5003 6.9770 44 1 4.4642 -3.7258 6.7431 45 1 2.1636 -3.6259 7.4589 46 1 2.8336 -4.8800 8.5537 47 1 0.6756 -5.4795 7.0528 48 1 2.0009 -6.6778 7.1849 49 1 1.2696 -4.8782 4.8778 50 1 2.0184 -6.4999 4.8546 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318636903.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:59:30 Heat of formation + Delta-G solvation = 36.970727 kcal Electronic energy + Delta-G solvation = -30177.260087 eV Core-core repulsion = 26240.535369 eV Total energy + Delta-G solvation = -3936.724717 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.29893 -41.22913 -38.80414 -38.23386 -36.15254 -34.54692 -33.12392 -32.91579 -31.78315 -29.77478 -29.46019 -28.45872 -28.42098 -26.35179 -24.87046 -24.51051 -23.92420 -21.96402 -21.62526 -21.03897 -20.13315 -19.11300 -18.59459 -17.35282 -17.32930 -17.09712 -16.52699 -16.15117 -15.86187 -15.62921 -15.52483 -15.31909 -15.03180 -14.98768 -14.89264 -14.49359 -14.04621 -13.67786 -13.50994 -13.39474 -13.31156 -13.20017 -13.18869 -12.84190 -12.79915 -12.66897 -12.46209 -12.34413 -12.24128 -12.14278 -11.97214 -11.96144 -11.89238 -11.75514 -11.70862 -11.37475 -11.26537 -11.12914 -10.78960 -10.35451 -9.89311 -8.94403 -7.93688 -5.20838 0.16186 0.67309 1.05127 1.43927 1.45079 1.55426 2.17800 2.35723 2.55648 3.19686 3.24054 3.39091 3.53499 3.63782 3.73149 3.75061 3.76208 3.92733 3.98400 4.19600 4.20380 4.41938 4.50127 4.55032 4.55259 4.58920 4.60007 4.65789 4.70783 4.76081 4.77595 4.80549 4.84254 4.90542 4.95232 5.05072 5.11717 5.13517 5.17926 5.21954 5.24830 5.27748 5.37291 5.47965 5.51951 5.55544 5.73104 6.27734 6.53169 6.93823 7.25343 7.34755 8.11111 8.37565 9.29676 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.008876 B = 0.003916 C = 0.003001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3153.908185 B = 7147.636252 C = 9326.656684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.157 3.843 3 C -0.147 4.147 4 C -0.163 4.163 5 N -0.338 5.338 6 C 0.101 3.899 7 C -0.121 4.121 8 C 0.605 3.395 9 O -0.560 6.560 10 N -0.692 5.692 11 C 0.171 3.829 12 C 0.148 3.852 13 N -0.732 5.732 14 C -0.241 4.241 15 H 0.069 0.931 16 C -0.073 4.073 17 N -0.967 5.967 18 Si 0.971 3.029 19 H -0.268 1.268 20 H -0.296 1.296 21 H -0.289 1.289 22 C -0.117 4.117 23 C -0.114 4.114 24 C -0.115 4.115 25 C -0.110 4.110 26 N -0.228 5.228 27 N -0.084 5.084 28 H 0.057 0.943 29 H 0.116 0.884 30 H 0.070 0.930 31 H 0.051 0.949 32 H 0.113 0.887 33 H 0.063 0.937 34 H 0.075 0.925 35 H 0.119 0.881 36 H 0.052 0.948 37 H 0.225 0.775 38 H 0.405 0.595 39 H 0.015 0.985 40 H 0.029 0.971 41 H 0.374 0.626 42 H 0.249 0.751 43 H 0.073 0.927 44 H 0.063 0.937 45 H 0.071 0.929 46 H 0.086 0.914 47 H 0.083 0.917 48 H 0.075 0.925 49 H 0.061 0.939 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.051 8.381 -5.496 23.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.076 3.924 3 C -0.205 4.205 4 C -0.221 4.221 5 N -0.124 5.124 6 C -0.057 4.057 7 C -0.261 4.261 8 C 0.390 3.610 9 O -0.439 6.439 10 N -0.342 5.342 11 C 0.085 3.915 12 C 0.020 3.980 13 N -0.375 5.375 14 C -0.373 4.373 15 H 0.087 0.913 16 C -0.266 4.266 17 N -0.618 5.618 18 Si 0.800 3.200 19 H -0.193 1.193 20 H -0.223 1.223 21 H -0.216 1.216 22 C -0.155 4.155 23 C -0.151 4.151 24 C -0.153 4.153 25 C -0.149 4.149 26 N -0.101 5.101 27 N -0.064 5.064 28 H 0.076 0.924 29 H 0.134 0.866 30 H 0.089 0.911 31 H 0.070 0.930 32 H 0.132 0.868 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.137 0.863 36 H 0.071 0.929 37 H 0.241 0.759 38 H 0.241 0.759 39 H 0.033 0.967 40 H 0.047 0.953 41 H 0.207 0.793 42 H 0.058 0.942 43 H 0.092 0.908 44 H 0.082 0.918 45 H 0.090 0.910 46 H 0.105 0.895 47 H 0.102 0.898 48 H 0.094 0.906 49 H 0.080 0.920 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -20.853 8.848 -5.324 23.270 hybrid contribution 1.374 -0.568 -0.733 1.658 sum -19.479 8.280 -6.057 22.015 Atomic orbital electron populations 1.22292 0.89878 1.04181 1.04908 1.21626 0.96606 0.94243 0.79875 1.22027 1.01541 0.92120 1.04798 1.22362 1.01769 1.01934 0.95998 1.51169 1.40677 1.04949 1.15655 1.23538 0.97302 0.87763 0.97067 1.21576 1.14035 0.93281 0.97234 1.16912 0.77012 0.86044 0.81039 1.90732 1.53613 1.35047 1.64462 1.45851 1.60427 1.10885 1.17033 1.21296 0.95527 0.82625 0.92061 1.21226 0.85345 0.94334 0.97052 1.42346 1.07289 1.13770 1.74094 1.19636 0.90546 0.95976 1.31148 0.91316 1.25493 1.00348 0.97242 1.03485 1.69832 1.24230 1.12482 1.55228 0.85107 0.79517 0.78054 0.77321 1.19279 1.22308 1.21633 1.22546 0.98611 1.02363 0.91942 1.22497 0.93904 0.99585 0.99138 1.22372 1.00442 0.99731 0.92755 1.22344 0.93914 1.00527 0.98156 1.74603 1.13426 0.98416 1.23664 1.81812 1.16568 1.17251 0.90753 0.92360 0.86589 0.91086 0.93025 0.86830 0.91748 0.90574 0.86282 0.92907 0.75873 0.75917 0.96737 0.95291 0.79316 0.94179 0.90796 0.91830 0.91003 0.89542 0.89850 0.90605 0.92011 0.91723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 8.74 71.98 0.63 -0.82 16 2 C 0.16 2.24 1.25 3.60 0.00 2.25 16 3 C -0.15 -1.97 8.11 71.98 0.58 -1.39 16 4 C -0.16 -1.79 8.30 71.98 0.60 -1.20 16 5 N -0.34 -8.08 3.44 -306.89 -1.06 -9.13 16 6 C 0.10 2.70 10.43 83.85 0.87 3.57 16 7 C -0.12 -4.17 6.99 40.82 0.29 -3.89 16 8 C 0.60 23.27 6.86 86.69 0.59 23.87 16 9 O -0.56 -23.49 14.13 -4.02 -0.06 -23.55 16 10 N -0.69 -25.59 4.50 -422.76 -1.90 -27.49 16 11 C 0.17 6.10 0.57 4.32 0.00 6.10 16 12 C 0.15 6.70 4.64 86.38 0.40 7.10 16 13 N -0.73 -39.78 5.27 -343.44 -1.81 -41.59 16 14 C -0.24 -14.35 9.99 84.04 0.84 -13.51 16 15 H 0.07 4.00 7.83 -2.91 -0.02 3.98 16 16 C -0.07 -4.42 5.50 84.86 0.47 -3.96 16 17 N -0.97 -61.48 13.06 21.65 0.28 -61.20 16 18 Si 0.97 48.39 29.55 68.60 2.03 50.42 16 19 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 20 H -0.30 -14.75 7.11 99.48 0.71 -14.04 16 21 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 22 C -0.12 -3.68 5.74 31.67 0.18 -3.50 16 23 C -0.11 -2.64 6.91 31.89 0.22 -2.42 16 24 C -0.12 -2.62 6.83 31.67 0.22 -2.40 16 25 C -0.11 -3.33 5.22 31.32 0.16 -3.16 16 26 N -0.23 -8.07 12.05 -50.00 -0.60 -8.68 16 27 N -0.08 -2.63 12.91 37.02 0.48 -2.15 16 28 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.12 0.38 8.14 -2.38 -0.02 0.36 16 30 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.05 0.89 8.14 -2.39 -0.02 0.88 16 32 H 0.11 0.72 8.14 -2.38 -0.02 0.70 16 33 H 0.06 1.01 8.06 -2.39 -0.02 0.99 16 34 H 0.08 0.78 7.44 -2.39 -0.02 0.76 16 35 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.22 4.54 7.63 -2.91 -0.02 4.52 16 38 H 0.41 14.66 7.93 -92.71 -0.73 13.93 16 39 H 0.01 0.74 6.55 -2.39 -0.02 0.72 16 40 H 0.03 1.29 8.04 -2.39 -0.02 1.27 16 41 H 0.37 21.34 7.19 -92.71 -0.67 20.68 16 42 H 0.25 15.35 8.31 -92.71 -0.77 14.58 16 43 H 0.07 2.50 7.78 -2.39 -0.02 2.48 16 44 H 0.06 2.11 7.70 -2.39 -0.02 2.10 16 45 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 46 H 0.09 1.69 8.14 -2.38 -0.02 1.67 16 47 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 48 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 49 H 0.06 1.92 6.99 -2.39 -0.02 1.91 16 50 H 0.06 2.04 7.67 -2.38 -0.02 2.02 16 Total: -1.00 -78.31 401.00 2.97 -75.34 By element: Atomic # 1 Polarization: 41.83 SS G_CDS: -0.45 Total: 41.38 kcal Atomic # 6 Polarization: 0.59 SS G_CDS: 6.06 Total: 6.65 kcal Atomic # 7 Polarization: -145.63 SS G_CDS: -4.61 Total: -150.24 kcal Atomic # 8 Polarization: -23.49 SS G_CDS: -0.06 Total: -23.55 kcal Atomic # 14 Polarization: 48.39 SS G_CDS: 2.03 Total: 50.42 kcal Total: -78.31 2.97 -75.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318636903.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.310 kcal (2) G-P(sol) polarization free energy of solvation -78.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds