Wall clock time and date at job start Tue Mar 31 2020 20:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53005 * 109.47076 * 2 1 4 4 C 1.53004 * 109.47408 * 239.99799 * 2 1 3 5 5 C 1.50698 * 109.47245 * 119.99552 * 2 1 3 6 6 C 1.38819 * 119.98970 * 75.00481 * 5 2 1 7 7 C 1.38565 * 118.03741 * 179.97438 * 6 5 2 8 8 C 1.39479 * 117.90296 * 359.97438 * 7 6 5 9 9 N 1.39048 * 120.15218 * 180.02562 * 8 7 6 10 10 N 1.40105 * 119.99494 * 180.02562 * 9 8 7 11 11 C 1.34777 * 119.99775 * 179.72241 * 10 9 8 12 12 O 1.21588 * 120.00208 * 180.27510 * 11 10 9 13 13 N 1.34774 * 119.99902 * 0.27790 * 11 10 9 14 14 C 1.46507 * 119.99765 * 179.97438 * 13 11 10 15 15 C 1.53004 * 109.46773 * 179.97438 * 14 13 11 16 16 C 1.52997 * 109.47448 * 299.99896 * 15 14 13 17 17 C 1.52998 * 109.47328 * 60.00357 * 15 14 13 18 18 C 1.50700 * 109.46963 * 179.97438 * 15 14 13 19 19 H 1.07999 * 119.99988 * 359.97438 * 18 15 14 20 20 C 1.37875 * 120.00042 * 180.02562 * 18 15 14 21 21 N 1.31514 * 120.00041 * 359.97438 * 20 18 15 22 22 Si 1.86803 * 119.99847 * 180.02562 * 20 18 15 23 23 H 1.48494 * 109.47228 * 359.97438 * 22 20 18 24 24 H 1.48506 * 109.47130 * 120.00077 * 22 20 18 25 25 H 1.48507 * 109.46925 * 239.99561 * 22 20 18 26 26 N 1.32484 * 119.68668 * 0.28279 * 8 7 6 27 27 N 1.28348 * 122.07161 * 359.41849 * 26 8 7 28 28 H 1.08995 * 109.47527 * 300.00161 * 1 2 3 29 29 H 1.09001 * 109.47464 * 60.00669 * 1 2 3 30 30 H 1.08999 * 109.46996 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47069 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.46560 * 299.99426 * 3 2 1 33 33 H 1.08995 * 109.47073 * 59.99561 * 3 2 1 34 34 H 1.08999 * 109.47008 * 299.99951 * 4 2 1 35 35 H 1.08999 * 109.46677 * 59.99917 * 4 2 1 36 36 H 1.08996 * 109.46923 * 179.97438 * 4 2 1 37 37 H 1.07996 * 120.98668 * 359.95248 * 6 5 2 38 38 H 1.07997 * 121.04495 * 180.02562 * 7 6 5 39 39 H 0.97000 * 120.00662 * 0.02562 * 9 8 7 40 40 H 0.97001 * 120.00437 * 0.02562 * 10 9 8 41 41 H 0.97004 * 120.00566 * 359.97438 * 13 11 10 42 42 H 1.09000 * 109.46860 * 299.99768 * 14 13 11 43 43 H 1.08997 * 109.47067 * 60.00417 * 14 13 11 44 44 H 1.08996 * 109.46678 * 60.00135 * 16 15 14 45 45 H 1.08998 * 109.47244 * 179.97438 * 16 15 14 46 46 H 1.09004 * 109.46869 * 300.00473 * 16 15 14 47 47 H 1.09000 * 109.47603 * 59.99403 * 17 15 14 48 48 H 1.08998 * 109.47444 * 179.97438 * 17 15 14 49 49 H 1.09005 * 109.47105 * 299.99724 * 17 15 14 50 50 H 0.97000 * 119.99706 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7103 1.2305 6 6 1.9703 -2.0950 1.3063 7 6 2.4439 -2.7063 2.4561 8 6 2.9543 -1.8907 3.4660 9 7 3.4424 -2.4548 4.6394 10 7 3.9539 -1.6325 5.6519 11 6 4.4219 -2.1788 6.7916 12 8 4.8611 -1.4649 7.6724 13 7 4.4031 -3.5165 6.9550 14 6 4.9123 -4.1104 8.1937 15 6 4.7763 -5.6327 8.1229 16 6 3.3029 -6.0055 7.9468 17 6 5.5818 -6.1621 6.9348 18 6 5.3007 -6.2437 9.3968 19 1 5.6923 -5.6096 10.1785 20 6 5.2816 -7.6121 9.5639 21 7 4.8052 -8.3842 8.6118 22 14 5.9310 -8.3693 11.1433 23 1 6.4070 -7.2932 12.0490 24 1 4.8452 -9.1331 11.8090 25 1 7.0574 -9.2840 10.8270 26 7 2.9670 -0.5759 3.3040 27 7 2.5315 -0.0169 2.2339 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1299 1.4426 -0.0005 32 1 1.6766 1.9563 -0.8901 33 1 1.6765 1.9564 0.8899 34 1 1.6767 -1.7490 -1.2492 35 1 1.6766 -0.2075 -2.1392 36 1 3.1299 -0.7209 -1.2494 37 1 1.5645 -2.6787 0.4932 38 1 2.4194 -3.7803 2.5664 39 1 3.4289 -3.4176 4.7571 40 1 3.9671 -0.6697 5.5345 41 1 4.0524 -4.0861 6.2525 42 1 5.9619 -3.8445 8.3194 43 1 4.3381 -3.7337 9.0401 44 1 2.9241 -5.5636 7.0252 45 1 3.2061 -7.0900 7.8959 46 1 2.7290 -5.6283 8.7933 47 1 6.6315 -5.8965 7.0602 48 1 5.4853 -7.2466 6.8846 49 1 5.2030 -5.7202 6.0131 50 1 4.7914 -9.3470 8.7296 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325007794.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:13 Heat of formation + Delta-G solvation = 56.385738 kcal Electronic energy + Delta-G solvation = -28835.546859 eV Core-core repulsion = 24899.664040 eV Total energy + Delta-G solvation = -3935.882819 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.41199 -39.90284 -37.76696 -36.61680 -36.18871 -33.53646 -33.26357 -31.98236 -30.74546 -29.11260 -27.70911 -27.59089 -25.82518 -25.76282 -25.06167 -24.62162 -23.84832 -21.03177 -20.22867 -19.29668 -18.90737 -18.47380 -17.20202 -16.30547 -16.00117 -15.85024 -15.70435 -15.16893 -14.85807 -14.65474 -14.50418 -14.37024 -14.22952 -13.79875 -13.59717 -13.20883 -12.97115 -12.75117 -12.61701 -12.28510 -12.26571 -12.11940 -11.97267 -11.50073 -11.31229 -11.29797 -11.29028 -10.98705 -10.94729 -10.71200 -10.49297 -10.45112 -10.30677 -10.11057 -9.85991 -9.75224 -9.73280 -9.41878 -8.86901 -8.61648 -8.42663 -7.73760 -6.08643 -4.18326 0.61420 0.90440 1.79291 3.16595 3.23724 3.30283 3.32715 3.37988 3.46769 3.83377 4.15678 4.27092 4.31269 4.36187 4.61854 4.66035 4.68735 4.91207 5.05057 5.18733 5.21963 5.33451 5.38939 5.44010 5.50871 5.57385 5.61516 5.70089 5.79756 5.91979 5.93918 6.10359 6.11672 6.26121 6.30537 6.39465 6.68459 6.69470 6.76478 6.87841 6.93517 7.13618 7.27003 7.30167 7.46514 7.63659 7.92411 8.03515 8.25096 8.33050 8.65591 8.74524 8.83062 9.47880 10.92994 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.025240 B = 0.002056 C = 0.001950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.082663 B =13617.052794 C =14353.853722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.007 4.007 3 C -0.132 4.132 4 C -0.142 4.142 5 C 0.023 3.977 6 C -0.067 4.067 7 C -0.171 4.171 8 C 0.343 3.657 9 N -0.511 5.511 10 N -0.533 5.533 11 C 0.706 3.294 12 O -0.577 6.577 13 N -0.730 5.730 14 C 0.147 3.853 15 C 0.055 3.945 16 C -0.130 4.130 17 C -0.130 4.130 18 C -0.504 4.504 19 H 0.059 0.941 20 C 0.066 3.934 21 N -0.886 5.886 22 Si 0.894 3.106 23 H -0.272 1.272 24 H -0.284 1.284 25 H -0.284 1.284 26 N -0.307 5.307 27 N -0.190 5.190 28 H 0.058 0.942 29 H 0.064 0.936 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.066 0.934 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.058 0.942 37 H 0.150 0.850 38 H 0.151 0.849 39 H 0.433 0.567 40 H 0.439 0.561 41 H 0.387 0.613 42 H 0.057 0.943 43 H 0.057 0.943 44 H 0.002 0.998 45 H 0.087 0.913 46 H 0.028 0.972 47 H 0.028 0.972 48 H 0.087 0.913 49 H 0.002 0.998 50 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.807 10.691 -21.293 25.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.009 4.009 3 C -0.190 4.190 4 C -0.200 4.200 5 C -0.127 4.127 6 C -0.096 4.096 7 C -0.206 4.206 8 C 0.101 3.899 9 N -0.244 5.244 10 N -0.290 5.290 11 C 0.405 3.595 12 O -0.452 6.452 13 N -0.386 5.386 14 C 0.024 3.976 15 C 0.054 3.946 16 C -0.188 4.188 17 C -0.188 4.188 18 C -0.543 4.543 19 H 0.078 0.922 20 C -0.136 4.136 21 N -0.525 5.525 22 Si 0.722 3.278 23 H -0.197 1.197 24 H -0.211 1.211 25 H -0.211 1.211 26 N -0.159 5.159 27 N -0.031 5.031 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.168 0.832 38 H 0.169 0.831 39 H 0.278 0.722 40 H 0.285 0.715 41 H 0.223 0.777 42 H 0.075 0.925 43 H 0.075 0.925 44 H 0.021 0.979 45 H 0.105 0.895 46 H 0.047 0.953 47 H 0.047 0.953 48 H 0.105 0.895 49 H 0.021 0.979 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.975 12.406 -19.698 24.607 hybrid contribution -0.195 -2.356 -0.078 2.365 sum -8.170 10.050 -19.776 23.640 Atomic orbital electron populations 1.21889 0.93167 1.02129 1.02466 1.19312 0.95666 0.95849 0.90035 1.21728 1.01392 0.93845 1.02005 1.21956 1.01497 1.00206 0.96357 1.22437 1.00910 0.91925 0.97444 1.21987 0.95367 0.95041 0.97221 1.21649 1.03487 1.01715 0.93747 1.19846 0.91574 0.92526 0.85982 1.43027 1.66052 1.05507 1.09778 1.44665 1.67134 1.07151 1.10016 1.15880 0.79262 0.83532 0.80824 1.91000 1.53574 1.60795 1.39799 1.45558 1.66867 1.03928 1.22274 1.21708 0.97809 0.95504 0.82578 1.18386 0.93287 0.87169 0.95709 1.21833 0.96783 1.04195 0.95965 1.21836 0.98000 1.04310 0.94642 1.21000 1.40789 0.91677 1.00824 0.92233 1.24883 0.94991 0.97132 0.96566 1.69801 1.46073 1.04299 1.32325 0.86496 0.78566 0.79237 0.83485 1.19700 1.21055 1.21061 1.72952 1.19627 1.06885 1.16392 1.72676 1.04213 1.30821 0.95393 0.92254 0.91687 0.92465 0.92414 0.92633 0.91484 0.92271 0.91620 0.92280 0.83218 0.83080 0.72235 0.71529 0.77727 0.92472 0.92478 0.97904 0.89480 0.95255 0.95262 0.89473 0.97903 0.93032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.81 8.41 37.15 0.31 -0.50 16 2 C -0.01 -0.05 0.88 -155.66 -0.14 -0.18 16 3 C -0.13 -0.98 7.82 37.16 0.29 -0.69 16 4 C -0.14 -0.74 8.09 37.16 0.30 -0.44 16 5 C 0.02 0.22 5.63 -82.40 -0.46 -0.25 16 6 C -0.07 -0.51 9.20 -39.25 -0.36 -0.87 16 7 C -0.17 -1.44 10.06 -39.00 -0.39 -1.84 16 8 C 0.34 3.92 7.68 -154.77 -1.19 2.73 16 9 N -0.51 -5.96 6.42 31.22 0.20 -5.76 16 10 N -0.53 -7.68 6.30 27.63 0.17 -7.51 16 11 C 0.71 12.50 8.68 -86.92 -0.75 11.75 16 12 O -0.58 -12.43 17.18 5.29 0.09 -12.34 16 13 N -0.73 -12.57 4.92 -65.22 -0.32 -12.90 16 14 C 0.15 3.03 4.50 -4.04 -0.02 3.01 16 15 C 0.06 1.23 0.50 -155.66 -0.08 1.15 16 16 C -0.13 -2.79 8.08 37.16 0.30 -2.49 16 17 C -0.13 -2.80 8.08 37.16 0.30 -2.50 16 18 C -0.50 -12.84 8.01 -34.44 -0.28 -13.11 16 19 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 20 C 0.07 1.68 5.15 -17.82 -0.09 1.59 16 21 N -0.89 -22.91 9.35 55.43 0.52 -22.39 16 22 Si 0.89 20.35 29.54 -169.99 -5.02 15.33 16 23 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 26 N -0.31 -4.07 10.55 31.23 0.33 -3.74 16 27 N -0.19 -2.34 10.20 33.61 0.34 -1.99 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.29 8.10 -51.93 -0.42 -0.13 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.07 0.58 7.87 -51.93 -0.41 0.17 16 34 H 0.06 0.24 6.76 -51.93 -0.35 -0.11 16 35 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.15 0.67 6.81 -52.49 -0.36 0.31 16 38 H 0.15 0.84 8.06 -52.49 -0.42 0.42 16 39 H 0.43 4.33 6.71 -182.59 -1.23 3.10 16 40 H 0.44 6.33 8.08 -182.59 -1.47 4.85 16 41 H 0.39 5.81 4.08 -40.82 -0.17 5.64 16 42 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 43 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 44 H 0.00 0.04 6.86 -51.93 -0.36 -0.32 16 45 H 0.09 2.08 6.07 -51.93 -0.32 1.76 16 46 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.09 2.08 6.07 -51.93 -0.32 1.76 16 49 H 0.00 0.04 6.86 -51.93 -0.36 -0.32 16 50 H 0.26 6.48 8.31 -40.82 -0.34 6.15 16 LS Contribution 396.36 15.07 5.97 5.97 Total: -1.00 -29.97 396.36 -9.91 -39.88 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: -9.94 Total: 8.08 kcal Atomic # 6 Polarization: -0.39 SS G_CDS: -2.26 Total: -2.65 kcal Atomic # 7 Polarization: -55.53 SS G_CDS: 1.24 Total: -54.29 kcal Atomic # 8 Polarization: -12.43 SS G_CDS: 0.09 Total: -12.34 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -29.97 -9.91 -39.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325007794.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.266 kcal (2) G-P(sol) polarization free energy of solvation -29.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds