Wall clock time and date at job start Tue Mar 31 2020 20:23:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47094 * 2 1 4 4 C 1.52999 * 109.47122 * 240.00001 * 2 1 3 5 5 C 1.50702 * 109.47051 * 119.99829 * 2 1 3 6 6 N 1.30819 * 126.43789 * 234.24841 * 5 2 1 7 7 N 1.28934 * 109.74027 * 180.12574 * 6 5 2 8 8 C 1.29728 * 109.42460 * 0.10325 * 7 6 5 9 9 N 1.34791 * 126.43900 * 54.22792 * 5 2 1 10 10 C 1.46211 * 128.60383 * 359.40648 * 9 5 2 11 11 C 1.53335 * 109.17936 * 161.84770 * 10 9 5 12 12 N 1.47253 * 109.28494 * 45.65970 * 11 10 9 13 13 C 1.34785 * 121.05718 * 116.40322 * 12 11 10 14 14 O 1.21275 * 119.99925 * 0.08163 * 13 12 11 15 15 C 1.50694 * 119.99368 * 180.02562 * 13 12 11 16 16 H 1.08998 * 109.47876 * 320.00246 * 15 13 12 17 17 N 1.46906 * 109.47035 * 200.00140 * 15 13 12 18 18 C 1.53002 * 109.47103 * 80.00397 * 15 13 12 19 19 C 1.53002 * 109.47356 * 184.99324 * 18 15 13 20 20 C 1.50693 * 109.47037 * 179.97438 * 19 18 15 21 21 H 1.08003 * 120.00617 * 0.02562 * 20 19 18 22 22 C 1.37885 * 119.99989 * 180.02562 * 20 19 18 23 23 N 1.31509 * 120.00231 * 180.02562 * 22 20 19 24 24 Si 1.86798 * 119.99665 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.46803 * 90.00242 * 24 22 20 26 26 H 1.48502 * 109.47136 * 210.00063 * 24 22 20 27 27 H 1.48497 * 109.47544 * 330.00327 * 24 22 20 28 28 C 1.47522 * 117.99124 * 296.48132 * 12 11 10 29 29 H 1.09003 * 109.47196 * 300.00361 * 1 2 3 30 30 H 1.09006 * 109.47040 * 59.99776 * 1 2 3 31 31 H 1.08993 * 109.47361 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47133 * 180.02562 * 3 2 1 33 33 H 1.09006 * 109.47360 * 300.00028 * 3 2 1 34 34 H 1.08997 * 109.47401 * 60.00202 * 3 2 1 35 35 H 1.09000 * 109.47044 * 305.36669 * 4 2 1 36 36 H 1.09004 * 109.47024 * 65.36887 * 4 2 1 37 37 H 1.08998 * 109.46986 * 185.36706 * 4 2 1 38 38 H 1.09004 * 109.52410 * 281.76089 * 10 9 5 39 39 H 1.09007 * 109.52538 * 41.87616 * 10 9 5 40 40 H 1.09002 * 109.50700 * 165.57547 * 11 10 9 41 41 H 1.09004 * 109.50465 * 285.66649 * 11 10 9 42 42 H 1.00900 * 110.99744 * 300.00176 * 17 15 13 43 43 H 1.00900 * 110.99709 * 63.95562 * 17 15 13 44 44 H 1.09001 * 109.47120 * 304.99799 * 18 15 13 45 45 H 1.09000 * 109.47128 * 64.99466 * 18 15 13 46 46 H 1.08997 * 109.46919 * 300.00308 * 19 18 15 47 47 H 1.09000 * 109.46886 * 59.99994 * 19 18 15 48 48 H 0.96999 * 120.00455 * 179.97438 * 23 22 20 49 49 H 1.08994 * 109.95270 * 283.71960 * 28 12 11 50 50 H 1.08999 * 109.95249 * 162.53276 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0323 -0.7104 1.2305 6 7 2.8710 -0.2345 2.1145 7 7 3.0806 -1.1140 3.0336 8 6 2.3905 -2.1815 2.7747 9 7 1.7015 -1.9554 1.6273 10 6 0.7882 -2.9033 0.9908 11 6 1.0701 -4.3119 1.5270 12 7 1.2045 -4.2566 2.9923 13 6 0.3356 -4.9024 3.7952 14 8 -0.5742 -5.5432 3.3131 15 6 0.4955 -4.8291 5.2918 16 1 1.5532 -4.8903 5.5478 17 7 -0.2249 -5.9466 5.9166 18 6 -0.0768 -3.5049 5.8016 19 6 0.1964 -3.3748 7.3014 20 6 -0.3667 -2.0702 7.8033 21 1 -0.8696 -1.4009 7.1209 22 6 -0.2399 -1.7310 9.1337 23 7 -0.7317 -0.5927 9.5718 24 14 0.6293 -2.8889 10.3140 25 1 2.0778 -2.5637 10.3496 26 1 0.0535 -2.7333 11.6740 27 1 0.4476 -4.2900 9.8569 28 6 2.3187 -3.4711 3.5562 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.6003 -1.7174 -1.2986 36 1 1.7573 -0.1549 -2.1366 37 1 3.1257 -0.8052 -1.2025 38 1 -0.2412 -2.6261 1.2184 39 1 0.9397 -2.8864 -0.0885 40 1 0.2454 -4.9738 1.2624 41 1 1.9945 -4.6894 1.0900 42 1 -1.2085 -5.9122 5.6941 43 1 0.1763 -6.8319 5.6458 44 1 0.3961 -2.6772 5.2730 45 1 -1.1521 -3.4817 5.6249 46 1 -0.2765 -4.2025 7.8299 47 1 1.2718 -3.3979 7.4781 48 1 -0.6429 -0.3542 10.5078 49 1 3.2530 -4.0224 3.4511 50 1 2.1288 -3.2585 4.6083 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330600597.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:35 Heat of formation + Delta-G solvation = 40.759588 kcal Electronic energy + Delta-G solvation = -30533.978867 eV Core-core repulsion = 26597.418447 eV Total energy + Delta-G solvation = -3936.560420 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.52028 -40.37452 -37.44377 -37.19971 -35.62103 -34.31217 -32.79168 -31.34648 -30.57136 -30.17123 -27.81598 -27.78275 -27.02478 -26.49502 -24.78078 -23.34338 -22.76485 -20.92715 -20.28321 -19.96358 -18.92078 -17.55814 -17.29904 -16.91325 -16.69881 -16.12293 -15.71915 -15.55688 -15.38983 -14.91760 -14.61999 -14.34456 -14.17514 -13.94015 -13.72199 -13.50957 -13.11019 -12.98475 -12.69017 -12.60474 -12.59542 -12.46085 -12.24672 -12.02843 -11.84492 -11.71582 -11.48190 -11.40875 -11.33087 -11.09702 -10.89959 -10.58272 -10.37133 -10.28254 -9.98180 -9.82764 -9.62122 -9.37167 -9.12439 -9.05943 -8.60068 -8.44823 -5.97519 -3.95703 1.63644 2.05495 2.31643 2.60601 2.78490 3.38438 3.45560 3.52149 3.78610 3.89752 3.95553 4.18903 4.29164 4.42440 4.50738 4.52954 4.57293 4.73115 4.74305 4.87567 4.97463 5.08848 5.12286 5.16302 5.19012 5.25031 5.30897 5.37861 5.39208 5.46086 5.51257 5.53188 5.59167 5.66948 5.75448 5.86273 5.87348 5.99115 6.11858 6.18921 6.36411 6.63817 6.77760 6.89123 7.18812 7.32120 7.52576 7.55796 7.84276 7.86058 8.58368 8.65169 9.06371 9.64814 11.16025 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.011921 B = 0.003589 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.151536 B = 7799.958064 C = 9251.246963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.020 3.980 3 C -0.130 4.130 4 C -0.143 4.143 5 C 0.192 3.808 6 N -0.288 5.288 7 N -0.271 5.271 8 C 0.162 3.838 9 N -0.463 5.463 10 C 0.086 3.914 11 C 0.096 3.904 12 N -0.622 5.622 13 C 0.496 3.504 14 O -0.541 6.541 15 C 0.073 3.927 16 H 0.103 0.897 17 N -0.808 5.808 18 C -0.089 4.089 19 C -0.002 4.002 20 C -0.522 4.522 21 H 0.067 0.933 22 C 0.067 3.933 23 N -0.905 5.905 24 Si 0.879 3.121 25 H -0.278 1.278 26 H -0.290 1.290 27 H -0.260 1.260 28 C 0.193 3.807 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.054 0.946 36 H 0.073 0.927 37 H 0.062 0.938 38 H 0.095 0.905 39 H 0.106 0.894 40 H 0.118 0.882 41 H 0.083 0.917 42 H 0.351 0.649 43 H 0.337 0.663 44 H 0.059 0.941 45 H 0.060 0.940 46 H 0.035 0.965 47 H 0.010 0.990 48 H 0.262 0.738 49 H 0.104 0.896 50 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.639 -6.340 -24.907 26.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.018 3.982 3 C -0.188 4.188 4 C -0.201 4.201 5 C -0.076 4.076 6 N -0.127 5.127 7 N -0.111 5.111 8 C -0.106 4.106 9 N -0.154 5.154 10 C -0.038 4.038 11 C -0.028 4.028 12 N -0.357 5.357 13 C 0.284 3.716 14 O -0.417 6.417 15 C -0.042 4.042 16 H 0.120 0.880 17 N -0.336 5.336 18 C -0.128 4.128 19 C -0.040 4.040 20 C -0.560 4.560 21 H 0.085 0.915 22 C -0.134 4.134 23 N -0.544 5.544 24 Si 0.706 3.294 25 H -0.203 1.203 26 H -0.216 1.216 27 H -0.184 1.184 28 C 0.068 3.932 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.092 0.908 37 H 0.081 0.919 38 H 0.113 0.887 39 H 0.124 0.876 40 H 0.136 0.864 41 H 0.101 0.899 42 H 0.165 0.835 43 H 0.149 0.851 44 H 0.077 0.923 45 H 0.079 0.921 46 H 0.053 0.947 47 H 0.028 0.972 48 H 0.072 0.928 49 H 0.122 0.878 50 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 6.264 -5.352 -23.558 24.957 hybrid contribution -0.670 -1.509 -1.003 1.932 sum 5.594 -6.860 -24.561 26.108 Atomic orbital electron populations 1.22042 0.92912 1.02430 1.03429 1.19054 0.95718 0.95736 0.87732 1.21716 1.02224 0.92411 1.02469 1.21968 1.01822 0.99992 0.96338 1.24595 0.98988 0.83910 1.00080 1.74521 1.15233 1.22449 1.00519 1.74122 1.20394 0.97526 1.19033 1.24708 0.97014 0.99678 0.89229 1.45751 1.35204 1.13838 1.20625 1.22553 0.93910 0.88557 0.98763 1.21908 1.04726 0.95031 0.81107 1.48447 1.29975 1.51378 1.05936 1.22834 0.80042 0.76990 0.91718 1.90659 1.31899 1.42169 1.77002 1.21978 1.01187 0.96305 0.84778 0.87958 1.59012 1.08152 1.04095 1.62317 1.21539 1.00413 0.90541 1.00267 1.19476 0.96341 0.98029 0.90142 1.21121 1.37109 1.02967 0.94811 0.91470 1.25004 0.95132 0.94987 0.98255 1.69919 1.46366 1.22545 1.15567 0.86783 0.79942 0.82506 0.80179 1.20344 1.21615 1.18418 1.20401 0.90680 0.83710 0.98367 0.91612 0.90821 0.92561 0.91418 0.91784 0.91487 0.92709 0.90837 0.91870 0.88704 0.87591 0.86412 0.89897 0.83493 0.85128 0.92273 0.92106 0.94679 0.97194 0.92810 0.87810 0.85058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 8.32 37.16 0.31 -0.85 16 2 C 0.02 0.18 0.83 -155.66 -0.13 0.05 16 3 C -0.13 -1.14 7.99 37.16 0.30 -0.84 16 4 C -0.14 -0.90 8.39 37.16 0.31 -0.59 16 5 C 0.19 2.40 6.32 -155.38 -0.98 1.41 16 6 N -0.29 -4.65 11.58 32.71 0.38 -4.27 16 7 N -0.27 -4.60 12.21 32.78 0.40 -4.20 16 8 C 0.16 2.24 7.88 -155.30 -1.22 1.01 16 9 N -0.46 -5.38 3.11 -110.82 -0.34 -5.73 16 10 C 0.09 0.70 5.42 -4.02 -0.02 0.68 16 11 C 0.10 0.80 6.43 -3.46 -0.02 0.78 16 12 N -0.62 -6.92 2.98 -173.26 -0.52 -7.44 16 13 C 0.50 6.74 6.95 -10.98 -0.08 6.66 16 14 O -0.54 -8.43 15.70 5.56 0.09 -8.34 16 15 C 0.07 1.08 2.30 -68.86 -0.16 0.92 16 16 H 0.10 1.35 7.04 -51.93 -0.37 0.98 16 17 N -0.81 -11.72 8.44 -5.65 -0.05 -11.77 16 18 C -0.09 -1.69 4.44 -26.73 -0.12 -1.81 16 19 C 0.00 -0.06 3.93 -27.89 -0.11 -0.17 16 20 C -0.52 -15.00 9.66 -34.44 -0.33 -15.33 16 21 H 0.07 2.10 7.99 -52.48 -0.42 1.68 16 22 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 23 N -0.90 -28.49 13.96 55.43 0.77 -27.71 16 24 Si 0.88 22.02 27.47 -169.99 -4.67 17.35 16 25 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 26 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 27 H -0.26 -6.25 6.54 56.52 0.37 -5.88 16 28 C 0.19 2.20 6.19 -4.50 -0.03 2.17 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.39 5.65 -51.93 -0.29 0.10 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.05 0.29 5.92 -51.93 -0.31 -0.02 16 36 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.09 0.83 7.37 -51.93 -0.38 0.45 16 39 H 0.11 0.55 5.85 -51.93 -0.30 0.25 16 40 H 0.12 0.99 7.02 -51.93 -0.36 0.63 16 41 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.35 5.21 8.58 -39.29 -0.34 4.87 16 43 H 0.34 4.08 9.06 -39.29 -0.36 3.72 16 44 H 0.06 1.13 6.75 -51.93 -0.35 0.78 16 45 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 46 H 0.03 0.84 6.81 -51.93 -0.35 0.49 16 47 H 0.01 0.22 7.57 -51.93 -0.39 -0.17 16 48 H 0.26 7.73 8.31 -40.82 -0.34 7.40 16 49 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 50 H 0.13 1.67 4.88 -51.93 -0.25 1.42 16 LS Contribution 386.94 15.07 5.83 5.83 Total: -1.00 -36.48 386.94 -8.36 -44.84 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -7.88 Total: 5.44 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: -2.38 Total: -4.01 kcal Atomic # 7 Polarization: -61.76 SS G_CDS: 0.64 Total: -61.11 kcal Atomic # 8 Polarization: -8.43 SS G_CDS: 0.09 Total: -8.34 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.67 Total: 17.35 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -36.48 -8.36 -44.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330600597.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.604 kcal (2) G-P(sol) polarization free energy of solvation -36.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds