Wall clock time and date at job start Tue Mar 31 2020 20:23:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47094 * 2 1 4 4 C 1.52999 * 109.47122 * 240.00001 * 2 1 3 5 5 C 1.50702 * 109.47051 * 119.99829 * 2 1 3 6 6 N 1.30819 * 126.43789 * 234.24841 * 5 2 1 7 7 N 1.28934 * 109.74027 * 180.12574 * 6 5 2 8 8 C 1.29728 * 109.42460 * 0.10325 * 7 6 5 9 9 N 1.34791 * 126.43900 * 54.22792 * 5 2 1 10 10 C 1.46211 * 128.60383 * 359.40648 * 9 5 2 11 11 C 1.53335 * 109.17936 * 161.84770 * 10 9 5 12 12 N 1.47253 * 109.28494 * 45.65970 * 11 10 9 13 13 C 1.34785 * 121.05718 * 116.40322 * 12 11 10 14 14 O 1.21275 * 119.99925 * 0.08163 * 13 12 11 15 15 C 1.50694 * 119.99368 * 180.02562 * 13 12 11 16 16 H 1.08998 * 109.47876 * 320.00246 * 15 13 12 17 17 N 1.46906 * 109.47035 * 200.00140 * 15 13 12 18 18 C 1.53002 * 109.47103 * 80.00397 * 15 13 12 19 19 C 1.53002 * 109.47356 * 184.99324 * 18 15 13 20 20 C 1.50693 * 109.47037 * 179.97438 * 19 18 15 21 21 H 1.08003 * 120.00617 * 0.02562 * 20 19 18 22 22 C 1.37885 * 119.99989 * 180.02562 * 20 19 18 23 23 N 1.31509 * 120.00231 * 180.02562 * 22 20 19 24 24 Si 1.86798 * 119.99665 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.46803 * 90.00242 * 24 22 20 26 26 H 1.48502 * 109.47136 * 210.00063 * 24 22 20 27 27 H 1.48497 * 109.47544 * 330.00327 * 24 22 20 28 28 C 1.47522 * 117.99124 * 296.48132 * 12 11 10 29 29 H 1.09003 * 109.47196 * 300.00361 * 1 2 3 30 30 H 1.09006 * 109.47040 * 59.99776 * 1 2 3 31 31 H 1.08993 * 109.47361 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47133 * 180.02562 * 3 2 1 33 33 H 1.09006 * 109.47360 * 300.00028 * 3 2 1 34 34 H 1.08997 * 109.47401 * 60.00202 * 3 2 1 35 35 H 1.09000 * 109.47044 * 305.36669 * 4 2 1 36 36 H 1.09004 * 109.47024 * 65.36887 * 4 2 1 37 37 H 1.08998 * 109.46986 * 185.36706 * 4 2 1 38 38 H 1.09004 * 109.52410 * 281.76089 * 10 9 5 39 39 H 1.09007 * 109.52538 * 41.87616 * 10 9 5 40 40 H 1.09002 * 109.50700 * 165.57547 * 11 10 9 41 41 H 1.09004 * 109.50465 * 285.66649 * 11 10 9 42 42 H 1.00900 * 110.99744 * 300.00176 * 17 15 13 43 43 H 1.00900 * 110.99709 * 63.95562 * 17 15 13 44 44 H 1.09001 * 109.47120 * 304.99799 * 18 15 13 45 45 H 1.09000 * 109.47128 * 64.99466 * 18 15 13 46 46 H 1.08997 * 109.46919 * 300.00308 * 19 18 15 47 47 H 1.09000 * 109.46886 * 59.99994 * 19 18 15 48 48 H 0.96999 * 120.00455 * 179.97438 * 23 22 20 49 49 H 1.08994 * 109.95270 * 283.71960 * 28 12 11 50 50 H 1.08999 * 109.95249 * 162.53276 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0323 -0.7104 1.2305 6 7 2.8710 -0.2345 2.1145 7 7 3.0806 -1.1140 3.0336 8 6 2.3905 -2.1815 2.7747 9 7 1.7015 -1.9554 1.6273 10 6 0.7882 -2.9033 0.9908 11 6 1.0701 -4.3119 1.5270 12 7 1.2045 -4.2566 2.9923 13 6 0.3356 -4.9024 3.7952 14 8 -0.5742 -5.5432 3.3131 15 6 0.4955 -4.8291 5.2918 16 1 1.5532 -4.8903 5.5478 17 7 -0.2249 -5.9466 5.9166 18 6 -0.0768 -3.5049 5.8016 19 6 0.1964 -3.3748 7.3014 20 6 -0.3667 -2.0702 7.8033 21 1 -0.8696 -1.4009 7.1209 22 6 -0.2399 -1.7310 9.1337 23 7 -0.7317 -0.5927 9.5718 24 14 0.6293 -2.8889 10.3140 25 1 2.0778 -2.5637 10.3496 26 1 0.0535 -2.7333 11.6740 27 1 0.4476 -4.2900 9.8569 28 6 2.3187 -3.4711 3.5562 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.6003 -1.7174 -1.2986 36 1 1.7573 -0.1549 -2.1366 37 1 3.1257 -0.8052 -1.2025 38 1 -0.2412 -2.6261 1.2184 39 1 0.9397 -2.8864 -0.0885 40 1 0.2454 -4.9738 1.2624 41 1 1.9945 -4.6894 1.0900 42 1 -1.2085 -5.9122 5.6941 43 1 0.1763 -6.8319 5.6458 44 1 0.3961 -2.6772 5.2730 45 1 -1.1521 -3.4817 5.6249 46 1 -0.2765 -4.2025 7.8299 47 1 1.2718 -3.3979 7.4781 48 1 -0.6429 -0.3542 10.5078 49 1 3.2530 -4.0224 3.4511 50 1 2.1288 -3.2585 4.6083 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330600597.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:34 Heat of formation + Delta-G solvation = 14.332715 kcal Electronic energy + Delta-G solvation = -30535.124822 eV Core-core repulsion = 26597.418447 eV Total energy + Delta-G solvation = -3937.706375 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -44.50548 -41.43153 -38.20529 -38.12073 -37.01812 -35.26860 -34.80430 -32.34404 -32.26520 -31.10362 -28.76203 -28.31876 -28.26108 -27.51222 -25.99710 -24.48810 -23.84529 -22.22805 -21.73813 -20.77953 -19.95406 -18.91769 -18.51543 -18.16575 -17.84036 -17.17604 -16.82836 -16.50980 -16.32457 -16.20211 -15.65727 -15.45364 -15.27027 -15.05920 -14.77382 -14.64924 -14.37546 -14.10750 -13.96620 -13.77905 -13.50512 -13.31517 -13.16386 -12.95634 -12.81593 -12.66611 -12.64726 -12.58922 -12.40195 -12.10170 -12.07087 -11.99274 -11.79154 -11.63774 -11.38330 -11.34442 -11.21284 -11.16242 -10.72972 -10.34091 -10.04424 -9.72639 -8.26693 -6.30814 0.68675 1.18207 1.24164 1.40249 1.42638 1.56599 1.69114 1.74284 2.40656 2.91516 3.09447 3.10160 3.17639 3.27430 3.56467 3.61014 3.76971 3.86287 3.89241 3.95536 4.02341 4.10479 4.16135 4.21363 4.37388 4.43862 4.53891 4.57689 4.62027 4.64999 4.73156 4.75650 4.77797 4.89957 4.91854 4.93866 5.00402 5.04594 5.07928 5.16044 5.28403 5.37939 5.43845 5.61565 5.70073 5.75456 5.88775 6.09088 6.28555 6.49454 6.77472 6.80078 7.33795 7.60860 8.90664 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.011921 B = 0.003589 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.151536 B = 7799.958064 C = 9251.246963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.018 3.982 3 C -0.129 4.129 4 C -0.137 4.137 5 C 0.199 3.801 6 N -0.336 5.336 7 N -0.321 5.321 8 C 0.158 3.842 9 N -0.461 5.461 10 C 0.082 3.918 11 C 0.095 3.905 12 N -0.615 5.615 13 C 0.502 3.498 14 O -0.560 6.560 15 C 0.081 3.919 16 H 0.124 0.876 17 N -0.815 5.815 18 C -0.077 4.077 19 C 0.005 3.995 20 C -0.533 4.533 21 H 0.020 0.980 22 C 0.001 3.999 23 N -0.957 5.957 24 Si 0.954 3.046 25 H -0.266 1.266 26 H -0.288 1.288 27 H -0.238 1.238 28 C 0.196 3.804 29 H 0.037 0.963 30 H 0.100 0.900 31 H 0.066 0.934 32 H 0.055 0.945 33 H 0.093 0.907 34 H 0.040 0.960 35 H 0.070 0.930 36 H 0.097 0.903 37 H 0.052 0.948 38 H 0.089 0.911 39 H 0.144 0.856 40 H 0.123 0.877 41 H 0.111 0.889 42 H 0.347 0.653 43 H 0.353 0.647 44 H 0.050 0.950 45 H 0.041 0.959 46 H 0.036 0.964 47 H 0.023 0.977 48 H 0.265 0.735 49 H 0.139 0.861 50 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.531 -9.166 -27.156 29.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.015 3.985 3 C -0.187 4.187 4 C -0.195 4.195 5 C -0.069 4.069 6 N -0.175 5.175 7 N -0.160 5.160 8 C -0.112 4.112 9 N -0.152 5.152 10 C -0.040 4.040 11 C -0.027 4.027 12 N -0.350 5.350 13 C 0.290 3.710 14 O -0.438 6.438 15 C -0.035 4.035 16 H 0.141 0.859 17 N -0.345 5.345 18 C -0.116 4.116 19 C -0.033 4.033 20 C -0.571 4.571 21 H 0.038 0.962 22 C -0.195 4.195 23 N -0.598 5.598 24 Si 0.777 3.223 25 H -0.191 1.191 26 H -0.214 1.214 27 H -0.161 1.161 28 C 0.071 3.929 29 H 0.056 0.944 30 H 0.119 0.881 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.112 0.888 34 H 0.059 0.941 35 H 0.089 0.911 36 H 0.116 0.884 37 H 0.071 0.929 38 H 0.107 0.893 39 H 0.162 0.838 40 H 0.141 0.859 41 H 0.129 0.871 42 H 0.161 0.839 43 H 0.167 0.833 44 H 0.069 0.931 45 H 0.060 0.940 46 H 0.054 0.946 47 H 0.041 0.959 48 H 0.074 0.926 49 H 0.156 0.844 50 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 7.173 -8.190 -25.849 28.048 hybrid contribution -1.021 -0.502 -0.391 1.204 sum 6.151 -8.692 -26.241 28.319 Atomic orbital electron populations 1.22046 0.91907 1.03151 1.03412 1.19328 0.96380 0.95412 0.87341 1.21714 1.01483 0.92865 1.02604 1.21950 1.01174 1.00891 0.95455 1.25324 0.97394 0.84084 1.00148 1.74408 1.17736 1.23560 1.01819 1.73991 1.22675 0.98910 1.20447 1.25053 0.96612 0.99676 0.89892 1.45938 1.35112 1.14041 1.20072 1.22865 0.92841 0.87612 1.00707 1.22171 1.06430 0.95126 0.79016 1.48378 1.29193 1.50138 1.07248 1.22366 0.80087 0.77294 0.91278 1.90658 1.32641 1.43333 1.77177 1.21732 1.01889 0.93912 0.85932 0.85851 1.58975 1.08090 1.04842 1.62589 1.21242 0.99427 0.93246 0.97646 1.19353 0.96418 0.94718 0.92794 1.21523 1.36588 1.04567 0.94436 0.96191 1.26068 0.96079 0.96843 1.00501 1.70091 1.48418 1.25025 1.16232 0.85600 0.78803 0.80818 0.77107 1.19081 1.21431 1.16068 1.20519 0.92072 0.83222 0.97130 0.94371 0.88095 0.91482 0.92587 0.88815 0.94102 0.91080 0.88413 0.92872 0.89250 0.83831 0.85925 0.87060 0.83868 0.83314 0.93132 0.94032 0.94598 0.95915 0.92646 0.84375 0.86603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 8.32 71.98 0.60 -1.41 16 2 C 0.02 0.29 0.83 -52.93 -0.04 0.25 16 3 C -0.13 -2.22 7.99 71.98 0.58 -1.65 16 4 C -0.14 -1.28 8.39 71.98 0.60 -0.68 16 5 C 0.20 4.95 6.32 138.12 0.87 5.82 16 6 N -0.34 -11.34 11.58 -50.42 -0.58 -11.93 16 7 N -0.32 -11.29 12.21 -50.19 -0.61 -11.90 16 8 C 0.16 4.30 7.88 138.22 1.09 5.39 16 9 N -0.46 -10.19 3.11 -504.53 -1.57 -11.76 16 10 C 0.08 1.11 5.42 86.55 0.47 1.58 16 11 C 0.09 1.27 6.43 86.35 0.56 1.82 16 12 N -0.62 -12.28 2.98 -820.45 -2.44 -14.72 16 13 C 0.50 12.67 6.95 87.65 0.61 13.28 16 14 O -0.56 -16.34 15.70 -3.01 -0.05 -16.39 16 15 C 0.08 2.25 2.30 44.17 0.10 2.35 16 16 H 0.12 2.92 7.04 -2.39 -0.02 2.90 16 17 N -0.82 -22.07 8.44 -171.80 -1.45 -23.52 16 18 C -0.08 -2.94 4.44 30.60 0.14 -2.80 16 19 C 0.00 0.21 3.93 29.85 0.12 0.33 16 20 C -0.53 -31.69 9.66 25.60 0.25 -31.44 16 21 H 0.02 1.32 7.99 -2.91 -0.02 1.30 16 22 C 0.00 0.07 5.47 84.66 0.46 0.53 16 23 N -0.96 -62.34 13.96 21.45 0.30 -62.04 16 24 Si 0.95 45.39 27.47 68.60 1.88 47.28 16 25 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 26 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 27 H -0.24 -10.39 6.54 99.48 0.65 -9.74 16 28 C 0.20 4.14 6.19 85.52 0.53 4.67 16 29 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.10 0.84 8.14 -2.38 -0.02 0.82 16 31 H 0.07 0.76 5.65 -2.39 -0.01 0.74 16 32 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 33 H 0.09 1.01 8.14 -2.38 -0.02 1.00 16 34 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.07 0.43 5.92 -2.39 -0.01 0.42 16 36 H 0.10 0.49 8.14 -2.38 -0.02 0.47 16 37 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.09 1.36 7.37 -2.38 -0.02 1.35 16 39 H 0.14 0.86 5.85 -2.38 -0.01 0.85 16 40 H 0.12 1.64 7.02 -2.39 -0.02 1.62 16 41 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.35 9.89 8.58 -89.69 -0.77 9.12 16 43 H 0.35 7.62 9.06 -89.69 -0.81 6.81 16 44 H 0.05 1.98 6.75 -2.39 -0.02 1.97 16 45 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 46 H 0.04 1.67 6.81 -2.39 -0.02 1.65 16 47 H 0.02 1.00 7.57 -2.39 -0.02 0.98 16 48 H 0.26 16.09 8.31 -92.71 -0.77 15.32 16 49 H 0.14 1.99 8.14 -2.39 -0.02 1.98 16 50 H 0.12 2.86 4.88 -2.39 -0.01 2.85 16 Total: -1.00 -84.66 386.94 1.74 -82.92 By element: Atomic # 1 Polarization: 24.69 SS G_CDS: -0.66 Total: 24.03 kcal Atomic # 6 Polarization: -8.88 SS G_CDS: 6.92 Total: -1.96 kcal Atomic # 7 Polarization: -129.51 SS G_CDS: -6.36 Total: -135.88 kcal Atomic # 8 Polarization: -16.34 SS G_CDS: -0.05 Total: -16.39 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 1.88 Total: 47.28 kcal Total: -84.66 1.74 -82.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330600597.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.253 kcal (2) G-P(sol) polarization free energy of solvation -84.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds