Wall clock time and date at job start Tue Mar 31 2020 20:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46735 * 2 1 4 4 C 1.53002 * 109.47382 * 239.99918 * 2 1 3 5 5 C 1.50693 * 109.47027 * 119.99910 * 2 1 3 6 6 N 1.30829 * 126.44141 * 234.20918 * 5 2 1 7 7 N 1.28924 * 109.74152 * 180.13459 * 6 5 2 8 8 C 1.29729 * 109.43281 * 0.10191 * 7 6 5 9 9 N 1.34795 * 126.44371 * 54.21496 * 5 2 1 10 10 C 1.46219 * 128.59962 * 359.53697 * 9 5 2 11 11 C 1.53333 * 109.17153 * 161.62526 * 10 9 5 12 12 N 1.47082 * 109.24774 * 45.66530 * 11 10 9 13 13 C 1.34774 * 120.94552 * 116.42900 * 12 11 10 14 14 O 1.21277 * 119.99861 * 0.02562 * 13 12 11 15 15 C 1.50706 * 119.99869 * 180.02562 * 13 12 11 16 16 H 1.09001 * 109.46896 * 40.00454 * 15 13 12 17 17 N 1.46901 * 109.46881 * 160.00002 * 15 13 12 18 18 C 1.52998 * 109.47006 * 280.00103 * 15 13 12 19 19 C 1.52998 * 109.46872 * 174.99850 * 18 15 13 20 20 C 1.50702 * 109.47435 * 180.02562 * 19 18 15 21 21 H 1.08001 * 119.99161 * 359.97438 * 20 19 18 22 22 C 1.37877 * 120.00314 * 180.02562 * 20 19 18 23 23 N 1.31509 * 119.99673 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 119.99815 * 359.97438 * 22 20 19 25 25 H 1.48496 * 109.47051 * 90.00292 * 24 22 20 26 26 H 1.48500 * 109.46733 * 210.00208 * 24 22 20 27 27 H 1.48496 * 109.47167 * 330.00107 * 24 22 20 28 28 C 1.47527 * 118.10636 * 296.70761 * 12 11 10 29 29 H 1.08999 * 109.47150 * 299.99870 * 1 2 3 30 30 H 1.09005 * 109.47178 * 60.00339 * 1 2 3 31 31 H 1.09003 * 109.46893 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46709 * 180.02562 * 3 2 1 33 33 H 1.08996 * 109.47562 * 299.99553 * 3 2 1 34 34 H 1.08999 * 109.47196 * 60.00158 * 3 2 1 35 35 H 1.09001 * 109.46923 * 305.37233 * 4 2 1 36 36 H 1.09001 * 109.46727 * 65.36266 * 4 2 1 37 37 H 1.08992 * 109.47579 * 185.36383 * 4 2 1 38 38 H 1.08997 * 109.52444 * 41.71757 * 10 9 5 39 39 H 1.09004 * 109.57366 * 281.55707 * 10 9 5 40 40 H 1.09000 * 109.51183 * 285.73667 * 11 10 9 41 41 H 1.09004 * 109.51175 * 165.59531 * 11 10 9 42 42 H 1.00903 * 110.99792 * 60.00097 * 17 15 13 43 43 H 1.00902 * 110.99613 * 183.95312 * 17 15 13 44 44 H 1.09001 * 109.47035 * 55.00415 * 18 15 13 45 45 H 1.08996 * 109.47055 * 294.99848 * 18 15 13 46 46 H 1.09004 * 109.47127 * 300.00147 * 19 18 15 47 47 H 1.09005 * 109.47316 * 59.99880 * 19 18 15 48 48 H 0.97010 * 119.99988 * 179.97438 * 23 22 20 49 49 H 1.08995 * 109.95532 * 162.26130 * 28 12 11 50 50 H 1.09005 * 109.95092 * 283.53020 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2304 6 7 2.8716 -0.2348 2.1141 7 7 3.0811 -1.1143 3.0332 8 6 2.3904 -2.1816 2.7747 9 7 1.7014 -1.9553 1.6274 10 6 0.7897 -2.9041 0.9897 11 6 1.0751 -4.3130 1.5233 12 7 1.2098 -4.2590 2.9869 13 6 0.3418 -4.9090 3.7872 14 8 -0.5663 -5.5504 3.3025 15 6 0.4995 -4.8387 5.2844 16 1 0.7839 -3.8267 5.5726 17 7 -0.7730 -5.1917 5.9279 18 6 1.5856 -5.8201 5.7294 19 6 1.8333 -5.6602 7.2307 20 6 2.9035 -6.6264 7.6690 21 1 3.3609 -7.2886 6.9487 22 6 3.2979 -6.6658 8.9896 23 7 4.2315 -7.5094 9.3720 24 14 2.5062 -5.5209 10.2353 25 1 1.3167 -6.1823 10.8293 26 1 3.4835 -5.2042 11.3075 27 1 2.0890 -4.2663 9.5593 28 6 2.3184 -3.4680 3.5542 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1299 1.4425 -0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6003 -1.7174 -1.2986 36 1 1.7573 -0.1549 -2.1366 37 1 3.1257 -0.8052 -1.2025 38 1 0.9414 -2.8858 -0.0895 39 1 -0.2404 -2.6302 1.2175 40 1 2.0008 -4.6872 1.0862 41 1 0.2520 -4.9765 1.2578 42 1 -1.0585 -6.1262 5.6761 43 1 -0.7120 -5.0898 6.9299 44 1 2.5071 -5.6135 5.1851 45 1 1.2614 -6.8397 5.5211 46 1 2.1574 -4.6406 7.4389 47 1 0.9117 -5.8668 7.7750 48 1 4.5093 -7.5368 10.3011 49 1 2.1238 -3.2553 4.6053 50 1 3.2559 -4.0147 3.4516 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330600598.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:40 Heat of formation + Delta-G solvation = 39.863786 kcal Electronic energy + Delta-G solvation = -30140.604393 eV Core-core repulsion = 26204.005128 eV Total energy + Delta-G solvation = -3936.599265 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.61352 -40.26128 -37.53864 -37.17149 -35.82578 -34.35087 -32.85724 -31.40803 -30.40619 -30.23844 -27.92064 -27.86343 -27.11545 -26.50588 -24.84840 -23.47985 -22.91311 -21.02573 -20.27997 -20.06299 -18.91330 -17.69002 -17.38464 -17.01738 -16.71146 -16.08307 -15.72544 -15.36216 -15.07848 -14.94345 -14.53979 -14.40701 -14.24198 -14.02122 -13.75421 -13.59705 -13.11391 -13.00273 -12.89484 -12.76123 -12.68404 -12.65193 -12.30915 -12.12152 -12.02682 -11.85088 -11.57031 -11.50862 -11.42623 -11.39599 -11.03063 -10.51787 -10.44218 -10.36492 -10.17170 -9.89930 -9.63357 -9.37165 -9.34968 -9.06987 -8.64075 -8.46139 -6.13470 -4.13544 1.54752 2.00911 2.47489 2.59515 2.67434 3.24654 3.33758 3.34612 3.70509 3.87816 3.93849 4.16329 4.24930 4.36556 4.38856 4.42800 4.57598 4.65786 4.76413 4.91620 5.02522 5.04346 5.10367 5.13509 5.19496 5.22435 5.25939 5.28137 5.33836 5.40211 5.44888 5.46474 5.49366 5.58616 5.67791 5.76418 5.86659 5.94511 6.00702 6.02400 6.21992 6.55978 6.56855 6.92002 7.02611 7.15848 7.28844 7.60521 7.68319 7.99570 8.41450 8.54644 8.89854 9.47656 10.99607 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.017160 B = 0.002826 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.325577 B = 9904.380519 C =10693.788893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.020 3.980 3 C -0.130 4.130 4 C -0.145 4.145 5 C 0.190 3.810 6 N -0.291 5.291 7 N -0.277 5.277 8 C 0.163 3.837 9 N -0.462 5.462 10 C 0.086 3.914 11 C 0.098 3.902 12 N -0.624 5.624 13 C 0.538 3.462 14 O -0.525 6.525 15 C 0.069 3.931 16 H 0.100 0.900 17 N -0.830 5.830 18 C -0.131 4.131 19 C -0.010 4.010 20 C -0.525 4.525 21 H 0.071 0.929 22 C 0.069 3.931 23 N -0.899 5.899 24 Si 0.879 3.121 25 H -0.277 1.277 26 H -0.287 1.287 27 H -0.264 1.264 28 C 0.196 3.804 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.055 0.945 36 H 0.073 0.927 37 H 0.063 0.937 38 H 0.107 0.893 39 H 0.095 0.905 40 H 0.084 0.916 41 H 0.120 0.880 42 H 0.349 0.651 43 H 0.353 0.647 44 H 0.065 0.935 45 H 0.063 0.937 46 H 0.020 0.980 47 H 0.012 0.988 48 H 0.264 0.736 49 H 0.126 0.874 50 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.063 13.485 -22.895 27.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.018 3.982 3 C -0.188 4.188 4 C -0.202 4.202 5 C -0.077 4.077 6 N -0.130 5.130 7 N -0.116 5.116 8 C -0.105 4.105 9 N -0.153 5.153 10 C -0.038 4.038 11 C -0.026 4.026 12 N -0.361 5.361 13 C 0.328 3.672 14 O -0.399 6.399 15 C -0.046 4.046 16 H 0.118 0.882 17 N -0.363 5.363 18 C -0.170 4.170 19 C -0.048 4.048 20 C -0.563 4.563 21 H 0.090 0.910 22 C -0.133 4.133 23 N -0.538 5.538 24 Si 0.707 3.293 25 H -0.203 1.203 26 H -0.213 1.213 27 H -0.189 1.189 28 C 0.071 3.929 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.092 0.908 37 H 0.082 0.918 38 H 0.125 0.875 39 H 0.113 0.887 40 H 0.103 0.897 41 H 0.138 0.862 42 H 0.162 0.838 43 H 0.169 0.831 44 H 0.083 0.917 45 H 0.082 0.918 46 H 0.038 0.962 47 H 0.030 0.970 48 H 0.074 0.926 49 H 0.143 0.857 50 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -7.857 14.594 -22.682 28.093 hybrid contribution -0.492 -1.114 0.619 1.366 sum -8.349 13.480 -22.063 27.170 Atomic orbital electron populations 1.22034 0.92959 1.02476 1.03239 1.19053 0.95662 0.95703 0.87831 1.21708 1.02310 0.92420 1.02318 1.21977 1.01957 1.00077 0.96240 1.24599 0.98990 0.84036 1.00092 1.74507 1.15072 1.22715 1.00730 1.74111 1.20183 0.97815 1.19515 1.24773 0.96652 0.99735 0.89335 1.45798 1.35197 1.13760 1.20578 1.22593 0.93713 0.88634 0.98830 1.21868 1.05052 0.94813 0.80819 1.48212 1.30342 1.51555 1.05952 1.20888 0.79684 0.77206 0.89448 1.90651 1.31688 1.41121 1.76478 1.21608 0.92041 1.01828 0.89094 0.88239 1.58746 1.28580 1.34325 1.14615 1.22240 0.96678 0.97911 1.00208 1.19578 0.97035 0.97785 0.90377 1.21020 1.19986 1.20262 0.94982 0.91037 1.25030 0.94657 0.95204 0.98447 1.69905 1.29941 1.36614 1.17313 0.86787 0.79353 0.81920 0.81284 1.20267 1.21265 1.18871 1.20311 0.91543 0.83527 0.97539 0.91867 0.90811 0.92453 0.91377 0.91762 0.91689 0.92580 0.90809 0.91785 0.87542 0.88707 0.89732 0.86152 0.83751 0.83143 0.91671 0.91809 0.96187 0.97024 0.92582 0.85657 0.87248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 8.32 37.16 0.31 -0.59 16 2 C 0.02 0.15 0.83 -155.66 -0.13 0.02 16 3 C -0.13 -0.95 7.99 37.16 0.30 -0.65 16 4 C -0.14 -0.80 8.39 37.16 0.31 -0.49 16 5 C 0.19 2.12 6.32 -155.37 -0.98 1.14 16 6 N -0.29 -4.24 11.58 32.71 0.38 -3.87 16 7 N -0.28 -4.30 12.21 32.69 0.40 -3.90 16 8 C 0.16 2.10 7.86 -155.48 -1.22 0.88 16 9 N -0.46 -4.88 3.11 -110.96 -0.35 -5.23 16 10 C 0.09 0.64 5.42 -4.02 -0.02 0.62 16 11 C 0.10 0.84 6.43 -3.55 -0.02 0.82 16 12 N -0.62 -7.20 2.98 -173.61 -0.52 -7.72 16 13 C 0.54 7.75 6.96 -10.98 -0.08 7.68 16 14 O -0.53 -8.77 15.68 5.56 0.09 -8.68 16 15 C 0.07 1.04 2.39 -68.86 -0.16 0.87 16 16 H 0.10 1.41 6.41 -51.93 -0.33 1.08 16 17 N -0.83 -12.53 8.94 -5.65 -0.05 -12.58 16 18 C -0.13 -2.29 4.71 -26.73 -0.13 -2.41 16 19 C -0.01 -0.22 3.81 -27.88 -0.11 -0.33 16 20 C -0.52 -14.15 9.66 -34.44 -0.33 -14.49 16 21 H 0.07 2.10 7.99 -52.49 -0.42 1.68 16 22 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 23 N -0.90 -27.04 13.96 55.43 0.77 -26.26 16 24 Si 0.88 20.89 27.47 -169.99 -4.67 16.22 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 27 H -0.26 -5.95 6.54 56.52 0.37 -5.58 16 28 C 0.20 2.27 5.82 -4.68 -0.03 2.24 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.31 5.66 -51.93 -0.29 0.02 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.26 5.92 -51.93 -0.31 -0.05 16 36 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.11 0.50 5.84 -51.93 -0.30 0.20 16 39 H 0.09 0.70 7.38 -51.93 -0.38 0.32 16 40 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.12 1.05 7.01 -51.93 -0.36 0.68 16 42 H 0.35 5.30 8.58 -39.29 -0.34 4.96 16 43 H 0.35 5.20 7.55 -39.29 -0.30 4.90 16 44 H 0.06 1.10 7.35 -51.93 -0.38 0.71 16 45 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 46 H 0.02 0.43 7.20 -51.93 -0.37 0.05 16 47 H 0.01 0.24 6.30 -51.93 -0.33 -0.08 16 48 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 49 H 0.13 1.49 5.73 -51.93 -0.30 1.19 16 50 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 385.70 15.07 5.81 5.81 Total: -1.00 -34.40 385.70 -8.33 -42.73 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -7.81 Total: 6.34 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: -2.39 Total: -2.87 kcal Atomic # 7 Polarization: -60.19 SS G_CDS: 0.64 Total: -59.55 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: 0.09 Total: -8.68 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.67 Total: 16.22 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.40 -8.33 -42.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330600598.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.597 kcal (2) G-P(sol) polarization free energy of solvation -34.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds