Wall clock time and date at job start Tue Mar 31 2020 20:23:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46735 * 2 1 4 4 C 1.53002 * 109.47382 * 239.99918 * 2 1 3 5 5 C 1.50693 * 109.47027 * 119.99910 * 2 1 3 6 6 N 1.30829 * 126.44141 * 234.20918 * 5 2 1 7 7 N 1.28924 * 109.74152 * 180.13459 * 6 5 2 8 8 C 1.29729 * 109.43281 * 0.10191 * 7 6 5 9 9 N 1.34795 * 126.44371 * 54.21496 * 5 2 1 10 10 C 1.46219 * 128.59962 * 359.53697 * 9 5 2 11 11 C 1.53333 * 109.17153 * 161.62526 * 10 9 5 12 12 N 1.47082 * 109.24774 * 45.66530 * 11 10 9 13 13 C 1.34774 * 120.94552 * 116.42900 * 12 11 10 14 14 O 1.21277 * 119.99861 * 0.02562 * 13 12 11 15 15 C 1.50706 * 119.99869 * 180.02562 * 13 12 11 16 16 H 1.09001 * 109.46896 * 40.00454 * 15 13 12 17 17 N 1.46901 * 109.46881 * 160.00002 * 15 13 12 18 18 C 1.52998 * 109.47006 * 280.00103 * 15 13 12 19 19 C 1.52998 * 109.46872 * 174.99850 * 18 15 13 20 20 C 1.50702 * 109.47435 * 180.02562 * 19 18 15 21 21 H 1.08001 * 119.99161 * 359.97438 * 20 19 18 22 22 C 1.37877 * 120.00314 * 180.02562 * 20 19 18 23 23 N 1.31509 * 119.99673 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 119.99815 * 359.97438 * 22 20 19 25 25 H 1.48496 * 109.47051 * 90.00292 * 24 22 20 26 26 H 1.48500 * 109.46733 * 210.00208 * 24 22 20 27 27 H 1.48496 * 109.47167 * 330.00107 * 24 22 20 28 28 C 1.47527 * 118.10636 * 296.70761 * 12 11 10 29 29 H 1.08999 * 109.47150 * 299.99870 * 1 2 3 30 30 H 1.09005 * 109.47178 * 60.00339 * 1 2 3 31 31 H 1.09003 * 109.46893 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46709 * 180.02562 * 3 2 1 33 33 H 1.08996 * 109.47562 * 299.99553 * 3 2 1 34 34 H 1.08999 * 109.47196 * 60.00158 * 3 2 1 35 35 H 1.09001 * 109.46923 * 305.37233 * 4 2 1 36 36 H 1.09001 * 109.46727 * 65.36266 * 4 2 1 37 37 H 1.08992 * 109.47579 * 185.36383 * 4 2 1 38 38 H 1.08997 * 109.52444 * 41.71757 * 10 9 5 39 39 H 1.09004 * 109.57366 * 281.55707 * 10 9 5 40 40 H 1.09000 * 109.51183 * 285.73667 * 11 10 9 41 41 H 1.09004 * 109.51175 * 165.59531 * 11 10 9 42 42 H 1.00903 * 110.99792 * 60.00097 * 17 15 13 43 43 H 1.00902 * 110.99613 * 183.95312 * 17 15 13 44 44 H 1.09001 * 109.47035 * 55.00415 * 18 15 13 45 45 H 1.08996 * 109.47055 * 294.99848 * 18 15 13 46 46 H 1.09004 * 109.47127 * 300.00147 * 19 18 15 47 47 H 1.09005 * 109.47316 * 59.99880 * 19 18 15 48 48 H 0.97010 * 119.99988 * 179.97438 * 23 22 20 49 49 H 1.08995 * 109.95532 * 162.26130 * 28 12 11 50 50 H 1.09005 * 109.95092 * 283.53020 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2304 6 7 2.8716 -0.2348 2.1141 7 7 3.0811 -1.1143 3.0332 8 6 2.3904 -2.1816 2.7747 9 7 1.7014 -1.9553 1.6274 10 6 0.7897 -2.9041 0.9897 11 6 1.0751 -4.3130 1.5233 12 7 1.2098 -4.2590 2.9869 13 6 0.3418 -4.9090 3.7872 14 8 -0.5663 -5.5504 3.3025 15 6 0.4995 -4.8387 5.2844 16 1 0.7839 -3.8267 5.5726 17 7 -0.7730 -5.1917 5.9279 18 6 1.5856 -5.8201 5.7294 19 6 1.8333 -5.6602 7.2307 20 6 2.9035 -6.6264 7.6690 21 1 3.3609 -7.2886 6.9487 22 6 3.2979 -6.6658 8.9896 23 7 4.2315 -7.5094 9.3720 24 14 2.5062 -5.5209 10.2353 25 1 1.3167 -6.1823 10.8293 26 1 3.4835 -5.2042 11.3075 27 1 2.0890 -4.2663 9.5593 28 6 2.3184 -3.4680 3.5542 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1299 1.4425 -0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6003 -1.7174 -1.2986 36 1 1.7573 -0.1549 -2.1366 37 1 3.1257 -0.8052 -1.2025 38 1 0.9414 -2.8858 -0.0895 39 1 -0.2404 -2.6302 1.2175 40 1 2.0008 -4.6872 1.0862 41 1 0.2520 -4.9765 1.2578 42 1 -1.0585 -6.1262 5.6761 43 1 -0.7120 -5.0898 6.9299 44 1 2.5071 -5.6135 5.1851 45 1 1.2614 -6.8397 5.5211 46 1 2.1574 -4.6406 7.4389 47 1 0.9117 -5.8668 7.7750 48 1 4.5093 -7.5368 10.3011 49 1 2.1238 -3.2553 4.6053 50 1 3.2559 -4.0147 3.4516 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330600598.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:39 Heat of formation + Delta-G solvation = 15.929466 kcal Electronic energy + Delta-G solvation = -30141.642263 eV Core-core repulsion = 26204.005128 eV Total energy + Delta-G solvation = -3937.637135 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -44.51251 -41.34867 -38.19169 -38.09938 -37.19902 -35.26042 -34.79719 -32.29974 -32.08803 -31.11927 -28.76861 -28.28809 -28.20650 -27.48473 -26.08086 -24.57655 -23.85757 -22.34250 -21.57178 -20.76794 -19.96212 -19.02020 -18.57494 -18.21413 -17.80873 -16.99403 -16.53475 -16.33959 -16.22864 -16.06200 -15.78293 -15.44408 -15.27974 -15.02892 -14.77469 -14.68361 -14.51413 -14.14336 -13.98730 -13.81787 -13.55655 -13.28192 -13.14681 -13.04697 -12.93144 -12.70571 -12.63251 -12.59023 -12.38332 -12.11419 -12.06587 -11.98141 -11.92102 -11.67068 -11.40107 -11.36832 -11.16140 -10.91576 -10.76124 -10.32262 -10.02702 -9.71159 -8.29012 -6.33802 0.68480 1.18347 1.36676 1.37899 1.40785 1.50868 1.65744 1.71823 2.36422 2.91782 3.07043 3.11172 3.17150 3.29680 3.59927 3.66002 3.80613 3.87990 3.89278 3.93922 4.06592 4.11847 4.15725 4.22984 4.41276 4.46871 4.55556 4.57565 4.61811 4.68237 4.68798 4.78921 4.79592 4.93115 4.94059 4.94644 4.95214 5.03205 5.07651 5.19164 5.30768 5.35762 5.40714 5.46274 5.63297 5.75612 5.88552 6.10762 6.25936 6.45095 6.74777 6.89807 7.31076 7.60191 8.87560 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.017160 B = 0.002826 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.325577 B = 9904.380519 C =10693.788893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.018 3.982 3 C -0.128 4.128 4 C -0.141 4.141 5 C 0.202 3.798 6 N -0.334 5.334 7 N -0.319 5.319 8 C 0.159 3.841 9 N -0.460 5.460 10 C 0.086 3.914 11 C 0.094 3.906 12 N -0.617 5.617 13 C 0.541 3.459 14 O -0.549 6.549 15 C 0.076 3.924 16 H 0.111 0.889 17 N -0.830 5.830 18 C -0.119 4.119 19 C -0.007 4.007 20 C -0.530 4.530 21 H 0.030 0.970 22 C 0.004 3.996 23 N -0.952 5.952 24 Si 0.948 3.052 25 H -0.267 1.267 26 H -0.290 1.290 27 H -0.239 1.239 28 C 0.197 3.803 29 H 0.045 0.955 30 H 0.098 0.902 31 H 0.066 0.934 32 H 0.051 0.949 33 H 0.092 0.908 34 H 0.046 0.954 35 H 0.069 0.931 36 H 0.097 0.903 37 H 0.049 0.951 38 H 0.142 0.858 39 H 0.100 0.900 40 H 0.102 0.898 41 H 0.124 0.876 42 H 0.348 0.652 43 H 0.356 0.644 44 H 0.068 0.932 45 H 0.049 0.951 46 H 0.029 0.971 47 H 0.024 0.976 48 H 0.265 0.735 49 H 0.122 0.878 50 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.162 14.960 -24.950 30.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.016 3.984 3 C -0.186 4.186 4 C -0.199 4.199 5 C -0.067 4.067 6 N -0.173 5.173 7 N -0.158 5.158 8 C -0.111 4.111 9 N -0.150 5.150 10 C -0.036 4.036 11 C -0.029 4.029 12 N -0.352 5.352 13 C 0.330 3.670 14 O -0.426 6.426 15 C -0.039 4.039 16 H 0.129 0.871 17 N -0.362 5.362 18 C -0.158 4.158 19 C -0.045 4.045 20 C -0.568 4.568 21 H 0.049 0.951 22 C -0.193 4.193 23 N -0.592 5.592 24 Si 0.772 3.228 25 H -0.192 1.192 26 H -0.216 1.216 27 H -0.162 1.162 28 C 0.072 3.928 29 H 0.064 0.936 30 H 0.117 0.883 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.110 0.890 34 H 0.065 0.935 35 H 0.088 0.912 36 H 0.116 0.884 37 H 0.068 0.932 38 H 0.160 0.840 39 H 0.118 0.882 40 H 0.120 0.880 41 H 0.142 0.858 42 H 0.162 0.838 43 H 0.171 0.829 44 H 0.087 0.913 45 H 0.068 0.932 46 H 0.047 0.953 47 H 0.042 0.958 48 H 0.074 0.926 49 H 0.139 0.861 50 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -9.961 16.089 -24.778 31.177 hybrid contribution 0.209 -1.604 1.147 1.983 sum -9.753 14.485 -23.630 29.382 Atomic orbital electron populations 1.22035 0.91429 1.03236 1.03660 1.19328 0.96742 0.95364 0.87002 1.21706 1.01328 0.92753 1.02805 1.21976 1.01042 1.00981 0.95856 1.25325 0.97267 0.83997 1.00106 1.74419 1.17332 1.23639 1.01935 1.74001 1.21938 0.98989 1.20873 1.24833 0.96701 0.99418 0.90112 1.45956 1.35083 1.14023 1.19922 1.22845 0.93242 0.87003 1.00510 1.22127 1.06163 0.95795 0.78771 1.48156 1.29381 1.50438 1.07233 1.20635 0.79838 0.77334 0.89237 1.90644 1.32825 1.42361 1.76760 1.21505 0.90958 1.01434 0.90044 0.87094 1.58764 1.28314 1.34294 1.14829 1.22033 0.97975 0.98059 0.97776 1.19508 0.95511 0.96429 0.93016 1.21409 1.20779 1.20306 0.94312 0.95117 1.26019 0.95282 0.97036 1.00950 1.70071 1.32189 1.39091 1.17894 0.85684 0.78345 0.80517 0.78274 1.19210 1.21636 1.16226 1.20326 0.91874 0.83314 0.97252 0.93569 0.88309 0.91518 0.92937 0.88957 0.93464 0.91207 0.88427 0.93231 0.84041 0.88152 0.88024 0.85796 0.83831 0.82878 0.91329 0.93207 0.95295 0.95822 0.92592 0.86054 0.86290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 8.32 71.98 0.60 -0.70 16 2 C 0.02 0.23 0.83 -52.93 -0.04 0.19 16 3 C -0.13 -1.70 7.99 71.98 0.58 -1.13 16 4 C -0.14 -1.09 8.39 71.98 0.60 -0.49 16 5 C 0.20 4.26 6.32 138.11 0.87 5.13 16 6 N -0.33 -9.87 11.58 -50.42 -0.58 -10.45 16 7 N -0.32 -10.02 12.21 -50.49 -0.62 -10.64 16 8 C 0.16 3.98 7.86 138.10 1.09 5.06 16 9 N -0.46 -8.88 3.11 -504.98 -1.57 -10.45 16 10 C 0.09 1.01 5.42 86.54 0.47 1.48 16 11 C 0.09 1.36 6.43 86.38 0.56 1.91 16 12 N -0.62 -13.14 2.98 -821.56 -2.45 -15.59 16 13 C 0.54 14.71 6.96 87.66 0.61 15.32 16 14 O -0.55 -17.49 15.68 -3.02 -0.05 -17.53 16 15 C 0.08 2.15 2.39 44.17 0.11 2.26 16 16 H 0.11 2.93 6.41 -2.39 -0.02 2.92 16 17 N -0.83 -23.64 8.94 -171.79 -1.54 -25.17 16 18 C -0.12 -4.07 4.71 30.59 0.14 -3.93 16 19 C -0.01 -0.30 3.81 29.85 0.11 -0.19 16 20 C -0.53 -29.06 9.66 25.60 0.25 -28.82 16 21 H 0.03 1.87 7.99 -2.91 -0.02 1.85 16 22 C 0.00 0.22 5.47 84.66 0.46 0.69 16 23 N -0.95 -58.86 13.96 21.45 0.30 -58.56 16 24 Si 0.95 42.64 27.47 68.60 1.88 44.52 16 25 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 26 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 27 H -0.24 -9.70 6.54 99.48 0.65 -9.05 16 28 C 0.20 4.36 5.82 85.40 0.50 4.85 16 29 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.10 0.42 8.14 -2.38 -0.02 0.40 16 31 H 0.07 0.47 5.66 -2.39 -0.01 0.46 16 32 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.07 0.34 5.92 -2.39 -0.01 0.33 16 36 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 37 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 38 H 0.14 0.69 5.84 -2.39 -0.01 0.67 16 39 H 0.10 1.15 7.38 -2.39 -0.02 1.13 16 40 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.12 1.82 7.01 -2.38 -0.02 1.80 16 42 H 0.35 10.14 8.58 -89.69 -0.77 9.37 16 43 H 0.36 9.72 7.55 -89.69 -0.68 9.04 16 44 H 0.07 2.28 7.35 -2.39 -0.02 2.26 16 45 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 46 H 0.03 1.17 7.20 -2.39 -0.02 1.16 16 47 H 0.02 0.94 6.30 -2.38 -0.02 0.93 16 48 H 0.27 15.37 8.31 -92.70 -0.77 14.60 16 49 H 0.12 2.77 5.73 -2.39 -0.01 2.76 16 50 H 0.12 2.40 8.14 -2.38 -0.02 2.38 16 Total: -1.00 -77.59 385.70 1.76 -75.83 By element: Atomic # 1 Polarization: 26.92 SS G_CDS: -0.53 Total: 26.39 kcal Atomic # 6 Polarization: -5.26 SS G_CDS: 6.90 Total: 1.64 kcal Atomic # 7 Polarization: -124.41 SS G_CDS: -6.45 Total: -130.86 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: -0.05 Total: -17.53 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 1.88 Total: 44.52 kcal Total: -77.59 1.76 -75.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330600598.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.763 kcal (2) G-P(sol) polarization free energy of solvation -77.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds