Wall clock time and date at job start Tue Mar 31 2020 20:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50702 * 119.99892 * 2 1 4 4 N 1.46504 * 109.46668 * 125.00419 * 3 2 1 5 5 C 1.36460 * 127.13652 * 273.97226 * 4 3 2 6 6 N 1.38587 * 126.47331 * 359.97438 * 5 4 3 7 7 C 1.46891 * 111.00065 * 249.13829 * 6 5 4 8 8 C 1.46900 * 110.99582 * 125.18177 * 6 5 4 9 9 C 1.52997 * 109.47048 * 190.00312 * 8 6 5 10 10 C 1.50703 * 109.47666 * 180.02562 * 9 8 6 11 11 O 1.21281 * 119.99072 * 0.02562 * 10 9 8 12 12 N 1.34775 * 120.00359 * 179.97438 * 10 9 8 13 13 C 1.46501 * 119.99835 * 180.02562 * 12 10 9 14 14 N 1.31212 * 107.05209 * 180.26566 * 5 4 3 15 15 N 1.28526 * 109.86372 * 359.73245 * 14 5 4 16 16 C 1.30303 * 110.05202 * 0.02562 * 15 14 5 17 17 C 1.50697 * 126.34684 * 179.97438 * 16 15 14 18 18 C 1.52995 * 109.47312 * 245.35786 * 17 16 15 19 19 C 1.52996 * 109.46938 * 125.35637 * 17 16 15 20 20 C 1.50700 * 109.47239 * 5.36066 * 17 16 15 21 21 H 1.08002 * 120.00002 * 243.66909 * 20 17 16 22 22 C 1.37876 * 120.00433 * 63.66012 * 20 17 16 23 23 N 1.31510 * 120.00645 * 179.08386 * 22 20 17 24 24 Si 1.86801 * 119.99777 * 359.35929 * 22 20 17 25 25 H 1.48503 * 109.47318 * 94.28625 * 24 22 20 26 26 H 1.48498 * 109.47393 * 214.29010 * 24 22 20 27 27 H 1.48505 * 109.47092 * 334.28876 * 24 22 20 28 28 H 1.08005 * 119.99891 * 359.97438 * 1 2 3 29 29 H 1.07999 * 120.00048 * 179.97438 * 1 2 3 30 30 H 1.07997 * 120.00225 * 180.02562 * 2 1 3 31 31 H 1.09001 * 109.47165 * 5.00845 * 3 2 1 32 32 H 1.08996 * 109.47356 * 245.00093 * 3 2 1 33 33 H 1.08996 * 109.47377 * 64.25091 * 7 6 5 34 34 H 1.09007 * 109.46806 * 184.25188 * 7 6 5 35 35 H 1.08998 * 109.47279 * 304.24910 * 7 6 5 36 36 H 1.09006 * 109.47165 * 309.99890 * 8 6 5 37 37 H 1.09000 * 109.47165 * 70.00384 * 8 6 5 38 38 H 1.09005 * 109.47163 * 300.00202 * 9 8 6 39 39 H 1.09007 * 109.47313 * 59.99405 * 9 8 6 40 40 H 0.97003 * 119.99755 * 359.97438 * 12 10 9 41 41 H 1.08996 * 109.47127 * 59.99486 * 13 12 10 42 42 H 1.08992 * 109.46716 * 179.97438 * 13 12 10 43 43 H 1.08997 * 109.46575 * 299.99504 * 13 12 10 44 44 H 1.09003 * 109.47506 * 184.61685 * 18 17 16 45 45 H 1.09001 * 109.47192 * 304.61318 * 18 17 16 46 46 H 1.09001 * 109.47088 * 64.61741 * 18 17 16 47 47 H 1.09001 * 109.47178 * 306.57893 * 19 17 16 48 48 H 1.09005 * 109.47239 * 66.57532 * 19 17 16 49 49 H 1.09003 * 109.47370 * 186.57313 * 19 17 16 50 50 H 0.96993 * 120.00570 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.7241 1.7225 2.4108 6 7 1.5068 2.1750 2.8946 7 6 1.5700 3.6052 3.2239 8 6 1.0759 1.3859 4.0563 9 6 -0.3698 1.7427 4.4074 10 6 -0.8118 0.9336 5.5995 11 8 -0.0455 0.1492 6.1176 12 7 -2.0581 1.0825 6.0905 13 6 -2.4874 0.2963 7.2497 14 7 3.8365 1.5948 3.0947 15 7 4.7696 1.1489 2.3316 16 6 4.3118 0.9676 1.1252 17 6 5.0918 0.4572 -0.0588 18 6 5.1969 1.5600 -1.1141 19 6 4.3753 -0.7548 -0.6574 20 6 6.4741 0.0544 0.3861 21 1 7.3384 0.5769 0.0033 22 6 6.6356 -0.9812 1.2820 23 7 7.8427 -1.3446 1.6565 24 14 5.1399 -1.8730 1.9580 25 1 4.8680 -3.0783 1.1343 26 1 5.3996 -2.2812 3.3620 27 1 3.9629 -0.9685 1.9152 28 1 -0.5400 0.9354 0.0004 29 1 -0.5400 -0.9353 -0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3586 2.1317 0.0897 32 1 2.6213 1.4027 -0.9313 33 1 1.7486 4.1797 2.3150 34 1 0.6262 3.9170 3.6713 35 1 2.3820 3.7800 3.9296 36 1 1.1405 0.3240 3.8184 37 1 1.7215 1.6078 4.9060 38 1 -0.4345 2.8045 4.6452 39 1 -1.0155 1.5208 3.5576 40 1 -2.6705 1.7108 5.6767 41 1 -1.8414 0.5188 8.0990 42 1 -3.5171 0.5512 7.5002 43 1 -2.4230 -0.7656 7.0125 44 1 5.6892 1.1664 -2.0034 45 1 4.1979 1.9086 -1.3762 46 1 5.7785 2.3909 -0.7146 47 1 4.1964 -1.4935 0.1239 48 1 3.4232 -0.4398 -1.0844 49 1 4.9958 -1.1947 -1.4382 50 1 7.9563 -2.0733 2.2865 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340555116.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:28 Heat of formation + Delta-G solvation = 99.547198 kcal Electronic energy + Delta-G solvation = -30949.638871 eV Core-core repulsion = 27015.627673 eV Total energy + Delta-G solvation = -3934.011198 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.32813 -39.94263 -37.54658 -36.30990 -35.21419 -34.85438 -32.39058 -31.78841 -31.39700 -28.51773 -27.46748 -26.80048 -26.69869 -25.76462 -24.92203 -22.88016 -21.91064 -20.62985 -20.36158 -19.82192 -19.01025 -17.84898 -16.95528 -16.34162 -16.22117 -16.14403 -15.81945 -15.42705 -15.00225 -14.70946 -14.47983 -14.24444 -13.93091 -13.61961 -13.47945 -13.34674 -12.87962 -12.74879 -12.65133 -12.58647 -12.21653 -12.05134 -11.96474 -11.86900 -11.60908 -11.30986 -11.18684 -11.12689 -10.72525 -10.45445 -10.28323 -10.11844 -10.09331 -9.83489 -9.57802 -9.44622 -9.37523 -9.32047 -9.18315 -8.52985 -8.46941 -7.85528 -6.02907 -4.06152 2.03234 2.42242 2.46592 2.75968 3.09117 3.33396 3.46108 3.58340 3.84445 4.04064 4.51942 4.53202 4.73566 4.80894 4.85379 4.91604 5.00488 5.12887 5.16370 5.18491 5.22764 5.28977 5.44074 5.47680 5.49355 5.57100 5.69771 5.78792 5.82097 5.88887 5.90095 6.05112 6.06767 6.18074 6.22638 6.27424 6.29576 6.49329 6.53593 6.55301 6.67969 6.75671 6.79002 6.96394 7.12179 7.14170 7.33234 7.66014 7.85168 7.97465 8.49822 8.97396 9.60996 9.70341 11.09057 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.013790 B = 0.003932 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.937315 B = 7119.720883 C = 7697.667939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.169 4.169 3 C 0.141 3.859 4 N -0.470 5.470 5 C 0.302 3.698 6 N -0.462 5.462 7 C 0.030 3.970 8 C 0.085 3.915 9 C -0.136 4.136 10 C 0.512 3.488 11 O -0.531 6.531 12 N -0.740 5.740 13 C 0.087 3.913 14 N -0.315 5.315 15 N -0.269 5.269 16 C 0.237 3.763 17 C 0.114 3.886 18 C -0.122 4.122 19 C -0.151 4.151 20 C -0.500 4.500 21 H 0.083 0.917 22 C 0.099 3.901 23 N -0.886 5.886 24 Si 0.900 3.100 25 H -0.298 1.298 26 H -0.300 1.300 27 H -0.265 1.265 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.116 0.884 31 H 0.092 0.908 32 H 0.105 0.895 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.045 0.955 36 H 0.081 0.919 37 H 0.061 0.939 38 H 0.097 0.903 39 H 0.102 0.898 40 H 0.402 0.598 41 H 0.059 0.941 42 H 0.074 0.926 43 H 0.059 0.941 44 H 0.063 0.937 45 H 0.030 0.970 46 H 0.054 0.946 47 H 0.041 0.959 48 H 0.038 0.962 49 H 0.069 0.931 50 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.937 8.432 -0.041 26.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.188 4.188 3 C 0.018 3.982 4 N -0.163 5.163 5 C -0.053 4.053 6 N -0.187 5.187 7 C -0.118 4.118 8 C -0.043 4.043 9 C -0.176 4.176 10 C 0.298 3.702 11 O -0.406 6.406 12 N -0.393 5.393 13 C -0.057 4.057 14 N -0.159 5.159 15 N -0.108 5.108 16 C -0.029 4.029 17 C 0.110 3.890 18 C -0.181 4.181 19 C -0.209 4.209 20 C -0.538 4.538 21 H 0.101 0.899 22 C -0.106 4.106 23 N -0.522 5.522 24 Si 0.734 3.266 25 H -0.227 1.227 26 H -0.228 1.228 27 H -0.191 1.191 28 H 0.117 0.883 29 H 0.117 0.883 30 H 0.134 0.866 31 H 0.111 0.889 32 H 0.123 0.877 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.064 0.936 36 H 0.100 0.900 37 H 0.079 0.921 38 H 0.115 0.885 39 H 0.121 0.879 40 H 0.235 0.765 41 H 0.078 0.922 42 H 0.093 0.907 43 H 0.078 0.922 44 H 0.082 0.918 45 H 0.049 0.951 46 H 0.073 0.927 47 H 0.060 0.940 48 H 0.057 0.943 49 H 0.088 0.912 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -23.611 7.727 1.279 24.876 hybrid contribution -1.649 -0.289 0.030 1.674 sum -25.259 7.438 1.309 26.364 Atomic orbital electron populations 1.23797 0.95427 1.01880 0.99615 1.23282 0.96327 0.98647 1.00522 1.20911 0.91880 0.96667 0.88790 1.46578 1.11009 1.49951 1.08790 1.22045 0.92452 1.06661 0.84156 1.58490 1.22481 1.04142 1.33558 1.22479 1.01754 0.86143 1.01418 1.21747 0.93209 0.98260 0.91077 1.21651 0.98588 1.00758 0.96628 1.20702 0.81476 0.83055 0.84982 1.90776 1.52753 1.36760 1.60325 1.45814 1.14808 1.44962 1.33688 1.21525 0.99671 0.96291 0.88247 1.74569 0.96977 1.17757 1.26626 1.74222 1.20994 1.15991 0.99545 1.26566 0.79430 0.97713 0.99215 1.17297 0.94102 0.91621 0.85963 1.21765 0.99013 0.98545 0.98728 1.22453 0.98862 0.98886 1.00651 1.20509 0.88846 1.17119 1.27290 0.89929 1.24854 0.95248 0.96079 0.94375 1.69854 1.21426 1.28428 1.32506 0.86867 0.84222 0.78254 0.77247 1.22654 1.22802 1.19053 0.88277 0.88298 0.86631 0.88932 0.87716 0.91328 0.90606 0.93625 0.90021 0.92072 0.88502 0.87928 0.76508 0.92214 0.90734 0.92230 0.91815 0.95130 0.92722 0.94012 0.94300 0.91195 0.92542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.81 14.32 29.01 0.42 -1.39 16 2 C -0.17 -2.30 8.80 -36.03 -0.32 -2.62 16 3 C 0.14 2.00 5.63 -5.19 -0.03 1.97 16 4 N -0.47 -8.98 2.79 -115.36 -0.32 -9.31 16 5 C 0.30 5.92 6.45 -318.86 -2.06 3.87 16 6 N -0.46 -6.80 4.78 -182.38 -0.87 -7.67 16 7 C 0.03 0.35 9.42 60.06 0.57 0.92 16 8 C 0.08 1.25 4.10 -3.83 -0.02 1.23 16 9 C -0.14 -1.29 5.64 -27.88 -0.16 -1.44 16 10 C 0.51 5.84 7.83 -10.98 -0.09 5.76 16 11 O -0.53 -8.88 15.98 5.56 0.09 -8.79 16 12 N -0.74 -5.53 5.71 -67.08 -0.38 -5.91 16 13 C 0.09 0.60 10.70 59.85 0.64 1.24 16 14 N -0.32 -7.58 12.11 30.32 0.37 -7.21 16 15 N -0.27 -7.12 9.28 32.99 0.31 -6.81 16 16 C 0.24 5.47 3.58 -154.01 -0.55 4.91 16 17 C 0.11 2.56 0.48 -156.82 -0.08 2.49 16 18 C -0.12 -2.27 8.32 37.15 0.31 -1.96 16 19 C -0.15 -3.07 6.89 37.16 0.26 -2.81 16 20 C -0.50 -13.91 8.28 -34.44 -0.29 -14.20 16 21 H 0.08 2.46 7.99 -52.49 -0.42 2.04 16 22 C 0.10 2.94 5.21 -17.82 -0.09 2.85 16 23 N -0.89 -27.91 13.96 55.43 0.77 -27.14 16 24 Si 0.90 24.57 22.37 -169.99 -3.80 20.77 16 25 H -0.30 -7.79 7.07 56.52 0.40 -7.39 16 26 H -0.30 -8.73 7.11 56.52 0.40 -8.33 16 27 H -0.26 -7.00 4.47 56.52 0.25 -6.75 16 28 H 0.10 0.88 7.84 -52.48 -0.41 0.47 16 29 H 0.10 0.95 8.06 -52.49 -0.42 0.53 16 30 H 0.12 1.82 6.72 -52.49 -0.35 1.46 16 31 H 0.09 1.10 7.79 -51.93 -0.40 0.69 16 32 H 0.11 1.39 4.58 -51.93 -0.24 1.16 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.08 0.62 6.14 -51.92 -0.32 0.30 16 35 H 0.05 0.63 8.12 -51.93 -0.42 0.21 16 36 H 0.08 1.45 8.01 -51.93 -0.42 1.03 16 37 H 0.06 1.04 8.08 -51.93 -0.42 0.62 16 38 H 0.10 0.67 6.40 -51.93 -0.33 0.34 16 39 H 0.10 0.79 8.14 -51.92 -0.42 0.36 16 40 H 0.40 1.57 8.83 -40.82 -0.36 1.21 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.03 0.47 5.63 -51.93 -0.29 0.17 16 46 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 47 H 0.04 0.94 3.11 -51.93 -0.16 0.78 16 48 H 0.04 0.64 4.51 -51.93 -0.23 0.41 16 49 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 50 H 0.26 7.96 8.31 -40.82 -0.34 7.62 16 LS Contribution 386.53 15.07 5.82 5.82 Total: -1.00 -38.55 386.53 -7.37 -45.92 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -7.87 Total: -0.49 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: -1.48 Total: 0.81 kcal Atomic # 7 Polarization: -63.92 SS G_CDS: -0.13 Total: -64.05 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: 0.09 Total: -8.79 kcal Atomic # 14 Polarization: 24.57 SS G_CDS: -3.80 Total: 20.77 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -38.55 -7.37 -45.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340555116.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.469 kcal (2) G-P(sol) polarization free energy of solvation -38.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds