Wall clock time and date at job start Tue Mar 31 2020 20:56:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50702 * 119.99892 * 2 1 4 4 N 1.46504 * 109.46668 * 125.00419 * 3 2 1 5 5 C 1.36460 * 127.13652 * 273.97226 * 4 3 2 6 6 N 1.38587 * 126.47331 * 359.97438 * 5 4 3 7 7 C 1.46891 * 111.00065 * 249.13829 * 6 5 4 8 8 C 1.46900 * 110.99582 * 125.18177 * 6 5 4 9 9 C 1.52997 * 109.47048 * 190.00312 * 8 6 5 10 10 C 1.50703 * 109.47666 * 180.02562 * 9 8 6 11 11 O 1.21281 * 119.99072 * 0.02562 * 10 9 8 12 12 N 1.34775 * 120.00359 * 179.97438 * 10 9 8 13 13 C 1.46501 * 119.99835 * 180.02562 * 12 10 9 14 14 N 1.31212 * 107.05209 * 180.26566 * 5 4 3 15 15 N 1.28526 * 109.86372 * 359.73245 * 14 5 4 16 16 C 1.30303 * 110.05202 * 0.02562 * 15 14 5 17 17 C 1.50697 * 126.34684 * 179.97438 * 16 15 14 18 18 C 1.52995 * 109.47312 * 245.35786 * 17 16 15 19 19 C 1.52996 * 109.46938 * 125.35637 * 17 16 15 20 20 C 1.50700 * 109.47239 * 5.36066 * 17 16 15 21 21 H 1.08002 * 120.00002 * 243.66909 * 20 17 16 22 22 C 1.37876 * 120.00433 * 63.66012 * 20 17 16 23 23 N 1.31510 * 120.00645 * 179.08386 * 22 20 17 24 24 Si 1.86801 * 119.99777 * 359.35929 * 22 20 17 25 25 H 1.48503 * 109.47318 * 94.28625 * 24 22 20 26 26 H 1.48498 * 109.47393 * 214.29010 * 24 22 20 27 27 H 1.48505 * 109.47092 * 334.28876 * 24 22 20 28 28 H 1.08005 * 119.99891 * 359.97438 * 1 2 3 29 29 H 1.07999 * 120.00048 * 179.97438 * 1 2 3 30 30 H 1.07997 * 120.00225 * 180.02562 * 2 1 3 31 31 H 1.09001 * 109.47165 * 5.00845 * 3 2 1 32 32 H 1.08996 * 109.47356 * 245.00093 * 3 2 1 33 33 H 1.08996 * 109.47377 * 64.25091 * 7 6 5 34 34 H 1.09007 * 109.46806 * 184.25188 * 7 6 5 35 35 H 1.08998 * 109.47279 * 304.24910 * 7 6 5 36 36 H 1.09006 * 109.47165 * 309.99890 * 8 6 5 37 37 H 1.09000 * 109.47165 * 70.00384 * 8 6 5 38 38 H 1.09005 * 109.47163 * 300.00202 * 9 8 6 39 39 H 1.09007 * 109.47313 * 59.99405 * 9 8 6 40 40 H 0.97003 * 119.99755 * 359.97438 * 12 10 9 41 41 H 1.08996 * 109.47127 * 59.99486 * 13 12 10 42 42 H 1.08992 * 109.46716 * 179.97438 * 13 12 10 43 43 H 1.08997 * 109.46575 * 299.99504 * 13 12 10 44 44 H 1.09003 * 109.47506 * 184.61685 * 18 17 16 45 45 H 1.09001 * 109.47192 * 304.61318 * 18 17 16 46 46 H 1.09001 * 109.47088 * 64.61741 * 18 17 16 47 47 H 1.09001 * 109.47178 * 306.57893 * 19 17 16 48 48 H 1.09005 * 109.47239 * 66.57532 * 19 17 16 49 49 H 1.09003 * 109.47370 * 186.57313 * 19 17 16 50 50 H 0.96993 * 120.00570 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.7241 1.7225 2.4108 6 7 1.5068 2.1750 2.8946 7 6 1.5700 3.6052 3.2239 8 6 1.0759 1.3859 4.0563 9 6 -0.3698 1.7427 4.4074 10 6 -0.8118 0.9336 5.5995 11 8 -0.0455 0.1492 6.1176 12 7 -2.0581 1.0825 6.0905 13 6 -2.4874 0.2963 7.2497 14 7 3.8365 1.5948 3.0947 15 7 4.7696 1.1489 2.3316 16 6 4.3118 0.9676 1.1252 17 6 5.0918 0.4572 -0.0588 18 6 5.1969 1.5600 -1.1141 19 6 4.3753 -0.7548 -0.6574 20 6 6.4741 0.0544 0.3861 21 1 7.3384 0.5769 0.0033 22 6 6.6356 -0.9812 1.2820 23 7 7.8427 -1.3446 1.6565 24 14 5.1399 -1.8730 1.9580 25 1 4.8680 -3.0783 1.1343 26 1 5.3996 -2.2812 3.3620 27 1 3.9629 -0.9685 1.9152 28 1 -0.5400 0.9354 0.0004 29 1 -0.5400 -0.9353 -0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3586 2.1317 0.0897 32 1 2.6213 1.4027 -0.9313 33 1 1.7486 4.1797 2.3150 34 1 0.6262 3.9170 3.6713 35 1 2.3820 3.7800 3.9296 36 1 1.1405 0.3240 3.8184 37 1 1.7215 1.6078 4.9060 38 1 -0.4345 2.8045 4.6452 39 1 -1.0155 1.5208 3.5576 40 1 -2.6705 1.7108 5.6767 41 1 -1.8414 0.5188 8.0990 42 1 -3.5171 0.5512 7.5002 43 1 -2.4230 -0.7656 7.0125 44 1 5.6892 1.1664 -2.0034 45 1 4.1979 1.9086 -1.3762 46 1 5.7785 2.3909 -0.7146 47 1 4.1964 -1.4935 0.1239 48 1 3.4232 -0.4398 -1.0844 49 1 4.9958 -1.1947 -1.4382 50 1 7.9563 -2.0733 2.2865 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001340555116.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:27 Heat of formation + Delta-G solvation = 68.922188 kcal Electronic energy + Delta-G solvation = -30950.966871 eV Core-core repulsion = 27015.627673 eV Total energy + Delta-G solvation = -3935.339198 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.95620 -40.85039 -38.80791 -37.81111 -36.66516 -35.65847 -33.96439 -33.51222 -32.55161 -30.03424 -28.37070 -28.28691 -27.93890 -27.06636 -26.65620 -24.05036 -23.53682 -21.70560 -21.47060 -21.12008 -20.56603 -19.01397 -18.55894 -17.76948 -17.49631 -17.22703 -16.93185 -16.67682 -16.48692 -15.97114 -15.71589 -15.60342 -15.29346 -15.02699 -14.68113 -14.43818 -14.34709 -14.23063 -13.94707 -13.64219 -13.30246 -13.21334 -13.09086 -12.99206 -12.89692 -12.75902 -12.56931 -12.45801 -12.19839 -12.14433 -12.10428 -12.00683 -11.50009 -11.37305 -11.07060 -11.05850 -10.87511 -10.76772 -10.44913 -10.17171 -9.89937 -9.61204 -8.34947 -6.36329 0.81405 1.04761 1.14351 1.27541 1.35165 1.58008 1.62394 2.05295 2.24430 2.28982 2.86879 3.09000 3.62471 3.72819 3.77386 3.86788 3.91494 4.09893 4.11507 4.18173 4.24429 4.37272 4.44792 4.44860 4.48545 4.54516 4.57333 4.65005 4.66761 4.71922 4.77921 4.80924 4.93026 4.94387 4.96524 4.98295 5.00164 5.07537 5.20636 5.38358 5.41620 5.49803 5.60761 5.62998 5.65586 5.70227 5.78426 6.24867 6.36841 6.53502 6.70328 7.25560 7.33615 8.01367 8.81334 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.013790 B = 0.003932 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.937315 B = 7119.720883 C = 7697.667939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.210 4.210 3 C 0.133 3.867 4 N -0.462 5.462 5 C 0.325 3.675 6 N -0.441 5.441 7 C 0.026 3.974 8 C 0.089 3.911 9 C -0.118 4.118 10 C 0.505 3.495 11 O -0.598 6.598 12 N -0.718 5.718 13 C 0.082 3.918 14 N -0.368 5.368 15 N -0.331 5.331 16 C 0.228 3.772 17 C 0.107 3.893 18 C -0.117 4.117 19 C -0.145 4.145 20 C -0.487 4.487 21 H 0.051 0.949 22 C 0.054 3.946 23 N -0.937 5.937 24 Si 0.949 3.051 25 H -0.282 1.282 26 H -0.337 1.337 27 H -0.254 1.254 28 H 0.129 0.871 29 H 0.110 0.890 30 H 0.089 0.911 31 H 0.127 0.873 32 H 0.115 0.885 33 H 0.080 0.920 34 H 0.126 0.874 35 H 0.019 0.981 36 H 0.043 0.957 37 H 0.027 0.973 38 H 0.135 0.865 39 H 0.137 0.863 40 H 0.424 0.576 41 H 0.044 0.956 42 H 0.116 0.884 43 H 0.043 0.957 44 H 0.077 0.923 45 H 0.071 0.929 46 H 0.037 0.963 47 H 0.018 0.982 48 H 0.082 0.918 49 H 0.076 0.924 50 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.053 10.795 -2.144 32.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.229 4.229 3 C 0.013 3.987 4 N -0.155 5.155 5 C -0.032 4.032 6 N -0.166 5.166 7 C -0.120 4.120 8 C -0.039 4.039 9 C -0.157 4.157 10 C 0.293 3.707 11 O -0.478 6.478 12 N -0.371 5.371 13 C -0.062 4.062 14 N -0.211 5.211 15 N -0.170 5.170 16 C -0.040 4.040 17 C 0.104 3.896 18 C -0.175 4.175 19 C -0.203 4.203 20 C -0.525 4.525 21 H 0.069 0.931 22 C -0.146 4.146 23 N -0.577 5.577 24 Si 0.784 3.216 25 H -0.209 1.209 26 H -0.268 1.268 27 H -0.179 1.179 28 H 0.147 0.853 29 H 0.128 0.872 30 H 0.107 0.893 31 H 0.145 0.855 32 H 0.133 0.867 33 H 0.099 0.901 34 H 0.144 0.856 35 H 0.038 0.962 36 H 0.062 0.938 37 H 0.045 0.955 38 H 0.153 0.847 39 H 0.155 0.845 40 H 0.261 0.739 41 H 0.062 0.938 42 H 0.134 0.866 43 H 0.062 0.938 44 H 0.096 0.904 45 H 0.089 0.911 46 H 0.056 0.944 47 H 0.036 0.964 48 H 0.101 0.899 49 H 0.094 0.906 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -29.826 10.139 -0.885 31.514 hybrid contribution 0.060 -0.897 0.698 1.138 sum -29.765 9.242 -0.188 31.168 Atomic orbital electron populations 1.24115 0.94264 1.03844 0.94457 1.23071 0.97385 0.97177 1.05251 1.21367 0.91748 0.98432 0.87184 1.46672 1.10251 1.48633 1.09899 1.22563 0.92903 1.03653 0.84083 1.58879 1.18972 1.05592 1.33190 1.22689 1.03567 0.83953 1.01813 1.21629 0.96364 0.96300 0.89592 1.21574 0.94876 1.02385 0.96908 1.21116 0.82038 0.82384 0.85197 1.90768 1.54848 1.39759 1.62449 1.45668 1.13783 1.44515 1.33157 1.21650 1.01685 0.95455 0.87420 1.74440 0.98475 1.20284 1.27929 1.74083 1.23331 1.18136 1.01413 1.26104 0.81378 0.98362 0.98206 1.17356 0.91349 0.93977 0.86957 1.21720 1.01451 0.96620 0.97692 1.22352 1.00915 0.97045 0.99955 1.20847 0.91091 1.15179 1.25376 0.93128 1.25390 0.96455 0.97447 0.95260 1.69973 1.23167 1.30002 1.34552 0.86138 0.82813 0.78063 0.74633 1.20932 1.26777 1.17915 0.85276 0.87202 0.89299 0.85526 0.86706 0.90117 0.85630 0.96225 0.93793 0.95483 0.84705 0.84530 0.73861 0.93750 0.86566 0.93814 0.90401 0.91056 0.94361 0.96363 0.89946 0.90552 0.93039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.03 14.32 67.78 0.97 -1.06 16 2 C -0.21 -4.88 8.80 25.65 0.23 -4.66 16 3 C 0.13 3.20 5.63 85.63 0.48 3.68 16 4 N -0.46 -16.80 2.79 -518.89 -1.45 -18.24 16 5 C 0.33 12.44 6.45 260.11 1.68 14.11 16 6 N -0.44 -11.72 4.78 -730.93 -3.49 -15.21 16 7 C 0.03 0.53 9.42 127.69 1.20 1.73 16 8 C 0.09 2.52 4.10 86.30 0.35 2.87 16 9 C -0.12 -1.74 5.64 29.85 0.17 -1.58 16 10 C 0.51 10.48 7.83 87.66 0.69 11.17 16 11 O -0.60 -20.38 15.98 -3.03 -0.05 -20.43 16 12 N -0.72 -8.29 5.71 -484.54 -2.77 -11.06 16 13 C 0.08 0.95 10.70 127.77 1.37 2.32 16 14 N -0.37 -18.26 12.11 -58.00 -0.70 -18.96 16 15 N -0.33 -18.17 9.28 -49.54 -0.46 -18.63 16 16 C 0.23 10.51 3.58 137.64 0.49 11.01 16 17 C 0.11 4.79 0.48 -53.68 -0.03 4.76 16 18 C -0.12 -4.12 8.32 71.98 0.60 -3.52 16 19 C -0.15 -5.68 6.89 71.98 0.50 -5.18 16 20 C -0.49 -28.08 8.28 25.60 0.21 -27.87 16 21 H 0.05 3.17 7.99 -2.91 -0.02 3.15 16 22 C 0.05 3.34 5.21 84.66 0.44 3.78 16 23 N -0.94 -62.62 13.96 21.45 0.30 -62.32 16 24 Si 0.95 53.59 22.37 68.60 1.53 55.12 16 25 H -0.28 -14.76 7.07 99.48 0.70 -14.06 16 26 H -0.34 -20.84 7.11 99.48 0.71 -20.13 16 27 H -0.25 -13.75 4.47 99.48 0.44 -13.30 16 28 H 0.13 1.29 7.84 -2.91 -0.02 1.27 16 29 H 0.11 1.53 8.06 -2.91 -0.02 1.51 16 30 H 0.09 2.57 6.72 -2.91 -0.02 2.56 16 31 H 0.13 2.20 7.79 -2.39 -0.02 2.18 16 32 H 0.12 2.47 4.58 -2.39 -0.01 2.46 16 33 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.13 1.27 6.14 -2.38 -0.01 1.26 16 35 H 0.02 0.50 8.12 -2.39 -0.02 0.48 16 36 H 0.04 1.57 8.01 -2.38 -0.02 1.55 16 37 H 0.03 0.94 8.08 -2.39 -0.02 0.92 16 38 H 0.14 1.01 6.40 -2.38 -0.02 1.00 16 39 H 0.14 1.20 8.14 -2.38 -0.02 1.18 16 40 H 0.42 1.11 8.83 -92.71 -0.82 0.29 16 41 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.12 0.38 8.14 -2.39 -0.02 0.36 16 43 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 44 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 45 H 0.07 1.91 5.63 -2.39 -0.01 1.90 16 46 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 47 H 0.02 0.79 3.11 -2.39 -0.01 0.79 16 48 H 0.08 2.48 4.51 -2.38 -0.01 2.47 16 49 H 0.08 2.86 8.14 -2.39 -0.02 2.84 16 50 H 0.26 16.77 8.31 -92.71 -0.77 16.00 16 Total: -1.00 -96.96 386.53 2.14 -94.82 By element: Atomic # 1 Polarization: 3.45 SS G_CDS: -0.13 Total: 3.33 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: 9.35 Total: 11.58 kcal Atomic # 7 Polarization: -135.85 SS G_CDS: -8.57 Total: -144.43 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: -0.05 Total: -20.43 kcal Atomic # 14 Polarization: 53.59 SS G_CDS: 1.53 Total: 55.12 kcal Total: -96.96 2.14 -94.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340555116.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.746 kcal (2) G-P(sol) polarization free energy of solvation -96.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds