Wall clock time and date at job start Tue Mar 31 2020 20:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50698 * 109.47295 * 2 1 4 4 C 1.31001 * 120.00000 * 126.10874 * 3 2 1 5 5 C 1.50698 * 119.99876 * 7.31479 * 4 3 2 6 6 H 1.08999 * 109.47266 * 7.45772 * 5 4 3 7 7 O 1.42897 * 109.46735 * 247.45457 * 5 4 3 8 8 C 1.50703 * 109.47009 * 127.45994 * 5 4 3 9 9 N 1.30286 * 126.35026 * 75.02265 * 8 5 4 10 10 N 1.28526 * 110.05672 * 180.02562 * 9 8 5 11 11 C 1.31223 * 109.86019 * 0.02562 * 10 9 8 12 12 N 1.38577 * 126.47432 * 180.02562 * 11 10 9 13 13 C 1.46953 * 111.00452 * 68.33550 * 12 11 10 14 14 C 1.53047 * 109.36819 * 176.80968 * 13 12 11 15 15 N 1.46961 * 109.36232 * 58.40177 * 14 13 12 16 16 C 1.46901 * 111.00159 * 176.81331 * 15 14 13 17 17 C 1.50702 * 109.46912 * 60.12272 * 16 15 14 18 18 H 1.07994 * 120.00274 * 355.79561 * 17 16 15 19 19 C 1.37881 * 119.99619 * 175.79356 * 17 16 15 20 20 N 1.31510 * 120.00174 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99897 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47232 * 59.99717 * 21 19 17 23 23 H 1.48495 * 109.47373 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.46995 * 299.99901 * 21 19 17 25 25 C 1.46953 * 110.87916 * 300.68186 * 15 14 13 26 26 C 1.46961 * 110.99886 * 304.53513 * 12 11 10 27 27 N 1.36452 * 107.04967 * 359.73530 * 11 10 9 28 28 C 1.46501 * 127.13752 * 180.26941 * 27 11 10 29 29 H 1.09006 * 109.47250 * 299.99812 * 1 2 3 30 30 H 1.08999 * 109.47533 * 60.00306 * 1 2 3 31 31 H 1.08998 * 109.47439 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46827 * 239.99614 * 2 1 3 33 33 H 1.09006 * 109.46890 * 119.99863 * 2 1 3 34 34 H 1.08001 * 119.99661 * 306.11147 * 3 2 1 35 35 H 1.08005 * 119.99552 * 187.31052 * 4 3 2 36 36 H 0.96701 * 114.00732 * 300.00209 * 7 5 4 37 37 H 1.08993 * 109.49252 * 296.78153 * 13 12 11 38 38 H 1.08998 * 109.48869 * 56.84490 * 13 12 11 39 39 H 1.08999 * 109.49345 * 298.43846 * 14 13 12 40 40 H 1.08995 * 109.49492 * 178.36862 * 14 13 12 41 41 H 1.08996 * 109.47337 * 180.12268 * 16 15 14 42 42 H 1.09003 * 109.46967 * 300.12223 * 16 15 14 43 43 H 0.97001 * 120.00183 * 179.97438 * 20 19 17 44 44 H 1.09002 * 109.49332 * 299.34859 * 25 15 14 45 45 H 1.09006 * 109.49146 * 179.28500 * 25 15 14 46 46 H 1.09000 * 109.48554 * 303.15724 * 26 12 11 47 47 H 1.09000 * 109.48403 * 63.20124 * 26 12 11 48 48 H 1.09005 * 109.46983 * 274.75653 * 28 27 11 49 49 H 1.08997 * 109.46936 * 34.75570 * 28 27 11 50 50 H 1.08997 * 109.47106 * 154.75898 * 28 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.8810 1.8154 0.9166 5 6 3.4816 0.8136 1.8687 6 1 3.1996 -0.1936 1.5619 7 8 2.9972 1.0624 3.1898 8 6 4.9831 0.9420 1.8518 9 7 5.6835 1.8888 2.4089 10 7 6.9362 1.6915 2.2001 11 6 7.1036 0.5993 1.4922 12 7 8.3122 0.0665 1.0729 13 6 9.0882 -0.4406 2.2132 14 6 10.3760 -1.0904 1.7018 15 7 11.1510 -0.1019 0.9390 16 6 12.4322 -0.6667 0.4944 17 6 12.1754 -1.8610 -0.3880 18 1 11.1655 -2.2108 -0.5429 19 6 13.2299 -2.5070 -0.9977 20 7 14.4597 -2.0807 -0.8096 21 14 12.9116 -3.9870 -2.0921 22 1 12.0340 -3.5879 -3.2216 23 1 14.2014 -4.4967 -2.6230 24 1 12.2464 -5.0535 -1.3013 25 6 10.3750 0.4052 -0.2012 26 6 9.0872 1.0551 0.3101 27 7 5.8631 0.0839 1.2526 28 6 5.5408 -1.1345 0.5057 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 1.6926 2.1136 -0.7556 35 1 3.1503 2.8588 0.9897 36 1 3.2122 1.9423 3.5285 37 1 9.3373 0.3852 2.8796 38 1 8.4980 -1.1799 2.7547 39 1 10.1270 -1.9332 1.0571 40 1 10.9670 -1.4415 2.5477 41 1 12.9865 0.0864 -0.0656 42 1 13.0142 -0.9750 1.3629 43 1 15.2016 -2.5354 -1.2382 44 1 10.1259 -0.4206 -0.8677 45 1 10.9652 1.1446 -0.7428 46 1 8.4962 1.4061 -0.5358 47 1 9.3359 1.8981 0.9548 48 1 5.4841 -0.9043 -0.5582 49 1 6.3171 -1.8806 0.6752 50 1 4.5813 -1.5252 0.8445 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350664405.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:51 Heat of formation + Delta-G solvation = 69.948963 kcal Electronic energy + Delta-G solvation = -29521.712472 eV Core-core repulsion = 25586.417799 eV Total energy + Delta-G solvation = -3935.294674 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.10258 -38.96564 -38.31525 -35.69362 -35.33289 -34.96131 -32.49056 -31.54885 -30.53939 -30.02064 -28.12325 -27.35060 -26.24469 -25.01361 -23.87895 -23.12940 -22.27319 -21.45260 -21.09020 -19.52189 -19.12466 -17.86829 -16.87562 -16.68083 -16.44653 -16.36647 -15.91105 -15.31634 -14.87296 -14.60784 -14.48775 -14.29348 -14.15739 -13.82749 -13.69272 -13.47274 -13.30528 -13.09128 -13.07014 -12.59089 -12.43798 -12.06239 -12.02746 -11.76266 -11.51377 -11.26649 -11.19524 -10.98533 -10.90096 -10.73239 -10.68248 -10.62317 -10.51718 -10.26062 -10.17988 -9.94153 -9.66892 -9.63382 -9.08098 -8.65673 -8.47308 -7.25529 -6.06853 -4.16271 1.39528 1.74951 2.10873 2.72076 3.24500 3.30382 3.31643 3.74177 3.96437 4.02029 4.14943 4.36270 4.45515 4.50593 4.54392 4.69131 4.86767 4.89864 4.91794 5.00964 5.14562 5.19900 5.23101 5.24052 5.39985 5.45392 5.47095 5.59322 5.61036 5.67414 5.74799 5.82033 5.84385 5.89597 6.00615 6.08761 6.12878 6.24074 6.39667 6.52595 6.63565 6.75186 6.88673 7.15135 7.22177 7.29144 7.47733 7.85254 7.96952 8.18650 8.24015 8.62096 8.93503 9.50594 10.98298 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.017945 B = 0.002477 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.946098 B =11301.215945 C =12267.475723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.114 4.114 3 C -0.124 4.124 4 C -0.193 4.193 5 C 0.229 3.771 6 H 0.122 0.878 7 O -0.540 6.540 8 C 0.138 3.862 9 N -0.279 5.279 10 N -0.307 5.307 11 C 0.363 3.637 12 N -0.467 5.467 13 C 0.070 3.930 14 C 0.066 3.934 15 N -0.542 5.542 16 C 0.187 3.813 17 C -0.551 4.551 18 H 0.058 0.942 19 C 0.065 3.935 20 N -0.890 5.890 21 Si 0.890 3.110 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.277 1.277 25 C 0.066 3.934 26 C 0.072 3.928 27 N -0.460 5.460 28 C 0.078 3.922 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.118 0.882 35 H 0.122 0.878 36 H 0.389 0.611 37 H 0.056 0.944 38 H 0.069 0.931 39 H 0.051 0.949 40 H 0.077 0.923 41 H 0.035 0.965 42 H 0.030 0.970 43 H 0.263 0.737 44 H 0.050 0.950 45 H 0.077 0.923 46 H 0.069 0.931 47 H 0.058 0.942 48 H 0.083 0.917 49 H 0.099 0.901 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.911 3.679 1.648 26.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.151 4.151 3 C -0.143 4.143 4 C -0.212 4.212 5 C 0.167 3.833 6 H 0.139 0.861 7 O -0.345 6.345 8 C -0.130 4.130 9 N -0.121 5.121 10 N -0.151 5.151 11 C 0.007 3.993 12 N -0.193 5.193 13 C -0.057 4.057 14 C -0.063 4.063 15 N -0.266 5.266 16 C 0.062 3.938 17 C -0.590 4.590 18 H 0.076 0.924 19 C -0.138 4.138 20 N -0.528 5.528 21 Si 0.717 3.283 22 H -0.203 1.203 23 H -0.212 1.212 24 H -0.203 1.203 25 C -0.063 4.063 26 C -0.055 4.055 27 N -0.154 5.154 28 C -0.065 4.065 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.136 0.864 35 H 0.140 0.860 36 H 0.239 0.761 37 H 0.074 0.926 38 H 0.087 0.913 39 H 0.069 0.931 40 H 0.095 0.905 41 H 0.053 0.947 42 H 0.048 0.952 43 H 0.073 0.927 44 H 0.068 0.932 45 H 0.095 0.905 46 H 0.088 0.912 47 H 0.076 0.924 48 H 0.102 0.898 49 H 0.118 0.882 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -25.593 4.257 2.324 26.048 hybrid contribution -0.011 -1.579 -1.600 2.247 sum -25.604 2.679 0.724 25.754 Atomic orbital electron populations 1.21676 0.94430 1.02000 1.02214 1.20910 0.96960 0.94463 1.02741 1.22950 0.96191 0.97758 0.97383 1.23250 0.99845 1.00184 0.97899 1.19212 0.81039 0.99439 0.83593 0.86081 1.86592 1.78539 1.40192 1.29208 1.25459 0.96014 0.90974 1.00543 1.73868 0.98022 1.20652 1.19553 1.74678 1.09507 1.14697 1.16222 1.22621 0.86584 0.91964 0.98138 1.59020 1.00174 1.36052 1.24098 1.22358 0.94158 0.99128 0.90064 1.21957 0.91500 0.94397 0.98471 1.62704 1.05758 1.35845 1.22335 1.19747 0.85066 0.93715 0.95282 1.21701 0.93199 1.14334 1.29752 0.92413 1.24965 0.95091 0.97299 0.96416 1.69928 0.98527 1.40658 1.43704 0.86702 0.77469 0.83135 0.80960 1.20302 1.21226 1.20293 1.21952 0.91531 0.99245 0.93557 1.22320 0.94013 0.92659 0.96460 1.46194 1.06201 1.21639 1.41344 1.22083 1.03228 0.84589 0.96644 0.92319 0.92528 0.92297 0.90713 0.90734 0.86401 0.86036 0.76122 0.92599 0.91304 0.93107 0.90501 0.94657 0.95173 0.92711 0.93179 0.90492 0.91239 0.92375 0.89816 0.88206 0.89686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 9.89 37.16 0.37 -0.35 16 2 C -0.11 -0.62 6.05 -27.89 -0.17 -0.79 16 3 C -0.12 -0.81 9.51 -36.03 -0.34 -1.15 16 4 C -0.19 -1.54 9.09 -36.03 -0.33 -1.87 16 5 C 0.23 2.09 3.40 -29.03 -0.10 1.99 16 6 H 0.12 0.92 4.00 -51.93 -0.21 0.71 16 7 O -0.54 -5.28 13.31 -35.23 -0.47 -5.75 16 8 C 0.14 1.73 6.91 -154.02 -1.06 0.66 16 9 N -0.28 -4.31 12.10 32.99 0.40 -3.91 16 10 N -0.31 -5.29 12.09 30.31 0.37 -4.92 16 11 C 0.36 5.64 6.50 -318.87 -2.07 3.56 16 12 N -0.47 -7.42 4.73 -174.36 -0.82 -8.24 16 13 C 0.07 1.14 5.55 -3.77 -0.02 1.12 16 14 C 0.07 1.23 5.25 -3.77 -0.02 1.21 16 15 N -0.54 -11.29 4.92 -235.91 -1.16 -12.45 16 16 C 0.19 4.67 5.14 -4.97 -0.03 4.65 16 17 C -0.55 -14.56 7.67 -34.44 -0.26 -14.82 16 18 H 0.06 1.51 5.81 -52.49 -0.31 1.20 16 19 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 20 N -0.89 -25.62 13.29 55.43 0.74 -24.88 16 21 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 C 0.07 1.25 5.31 -3.77 -0.02 1.23 16 26 C 0.07 1.19 5.47 -3.77 -0.02 1.17 16 27 N -0.46 -5.78 3.21 -121.46 -0.39 -6.17 16 28 C 0.08 0.66 11.07 59.85 0.66 1.32 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.42 5.26 -51.93 -0.27 0.14 16 34 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 35 H 0.12 1.02 8.06 -52.48 -0.42 0.59 16 36 H 0.39 3.10 8.96 45.56 0.41 3.51 16 37 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.07 1.02 8.13 -51.93 -0.42 0.60 16 39 H 0.05 1.03 6.51 -51.93 -0.34 0.69 16 40 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 41 H 0.04 0.95 8.13 -51.93 -0.42 0.53 16 42 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 44 H 0.05 1.02 6.89 -51.93 -0.36 0.67 16 45 H 0.08 1.44 8.13 -51.93 -0.42 1.02 16 46 H 0.07 1.06 8.13 -51.93 -0.42 0.63 16 47 H 0.06 1.01 8.11 -51.93 -0.42 0.59 16 48 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 49 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 50 H 0.08 0.48 6.94 -51.93 -0.36 0.12 16 LS Contribution 399.48 15.07 6.02 6.02 Total: -1.00 -31.84 399.48 -11.18 -43.02 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -7.33 Total: 1.84 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: -3.51 Total: -0.38 kcal Atomic # 7 Polarization: -59.71 SS G_CDS: -0.87 Total: -60.58 kcal Atomic # 8 Polarization: -5.28 SS G_CDS: -0.47 Total: -5.75 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -31.84 -11.18 -43.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350664405.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.971 kcal (2) G-P(sol) polarization free energy of solvation -31.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds