Wall clock time and date at job start Tue Mar 31 2020 20:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50698 * 109.47295 * 2 1 4 4 C 1.31001 * 120.00000 * 126.10874 * 3 2 1 5 5 C 1.50698 * 119.99876 * 7.31479 * 4 3 2 6 6 H 1.08999 * 109.47266 * 7.45772 * 5 4 3 7 7 O 1.42897 * 109.46735 * 247.45457 * 5 4 3 8 8 C 1.50703 * 109.47009 * 127.45994 * 5 4 3 9 9 N 1.30286 * 126.35026 * 75.02265 * 8 5 4 10 10 N 1.28526 * 110.05672 * 180.02562 * 9 8 5 11 11 C 1.31223 * 109.86019 * 0.02562 * 10 9 8 12 12 N 1.38577 * 126.47432 * 180.02562 * 11 10 9 13 13 C 1.46953 * 111.00452 * 68.33550 * 12 11 10 14 14 C 1.53047 * 109.36819 * 176.80968 * 13 12 11 15 15 N 1.46961 * 109.36232 * 58.40177 * 14 13 12 16 16 C 1.46901 * 111.00159 * 176.81331 * 15 14 13 17 17 C 1.50702 * 109.46912 * 60.12272 * 16 15 14 18 18 H 1.07994 * 120.00274 * 355.79561 * 17 16 15 19 19 C 1.37881 * 119.99619 * 175.79356 * 17 16 15 20 20 N 1.31510 * 120.00174 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99897 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47232 * 59.99717 * 21 19 17 23 23 H 1.48495 * 109.47373 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.46995 * 299.99901 * 21 19 17 25 25 C 1.46953 * 110.87916 * 300.68186 * 15 14 13 26 26 C 1.46961 * 110.99886 * 304.53513 * 12 11 10 27 27 N 1.36452 * 107.04967 * 359.73530 * 11 10 9 28 28 C 1.46501 * 127.13752 * 180.26941 * 27 11 10 29 29 H 1.09006 * 109.47250 * 299.99812 * 1 2 3 30 30 H 1.08999 * 109.47533 * 60.00306 * 1 2 3 31 31 H 1.08998 * 109.47439 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46827 * 239.99614 * 2 1 3 33 33 H 1.09006 * 109.46890 * 119.99863 * 2 1 3 34 34 H 1.08001 * 119.99661 * 306.11147 * 3 2 1 35 35 H 1.08005 * 119.99552 * 187.31052 * 4 3 2 36 36 H 0.96701 * 114.00732 * 300.00209 * 7 5 4 37 37 H 1.08993 * 109.49252 * 296.78153 * 13 12 11 38 38 H 1.08998 * 109.48869 * 56.84490 * 13 12 11 39 39 H 1.08999 * 109.49345 * 298.43846 * 14 13 12 40 40 H 1.08995 * 109.49492 * 178.36862 * 14 13 12 41 41 H 1.08996 * 109.47337 * 180.12268 * 16 15 14 42 42 H 1.09003 * 109.46967 * 300.12223 * 16 15 14 43 43 H 0.97001 * 120.00183 * 179.97438 * 20 19 17 44 44 H 1.09002 * 109.49332 * 299.34859 * 25 15 14 45 45 H 1.09006 * 109.49146 * 179.28500 * 25 15 14 46 46 H 1.09000 * 109.48554 * 303.15724 * 26 12 11 47 47 H 1.09000 * 109.48403 * 63.20124 * 26 12 11 48 48 H 1.09005 * 109.46983 * 274.75653 * 28 27 11 49 49 H 1.08997 * 109.46936 * 34.75570 * 28 27 11 50 50 H 1.08997 * 109.47106 * 154.75898 * 28 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.8810 1.8154 0.9166 5 6 3.4816 0.8136 1.8687 6 1 3.1996 -0.1936 1.5619 7 8 2.9972 1.0624 3.1898 8 6 4.9831 0.9420 1.8518 9 7 5.6835 1.8888 2.4089 10 7 6.9362 1.6915 2.2001 11 6 7.1036 0.5993 1.4922 12 7 8.3122 0.0665 1.0729 13 6 9.0882 -0.4406 2.2132 14 6 10.3760 -1.0904 1.7018 15 7 11.1510 -0.1019 0.9390 16 6 12.4322 -0.6667 0.4944 17 6 12.1754 -1.8610 -0.3880 18 1 11.1655 -2.2108 -0.5429 19 6 13.2299 -2.5070 -0.9977 20 7 14.4597 -2.0807 -0.8096 21 14 12.9116 -3.9870 -2.0921 22 1 12.0340 -3.5879 -3.2216 23 1 14.2014 -4.4967 -2.6230 24 1 12.2464 -5.0535 -1.3013 25 6 10.3750 0.4052 -0.2012 26 6 9.0872 1.0551 0.3101 27 7 5.8631 0.0839 1.2526 28 6 5.5408 -1.1345 0.5057 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 1.6926 2.1136 -0.7556 35 1 3.1503 2.8588 0.9897 36 1 3.2122 1.9423 3.5285 37 1 9.3373 0.3852 2.8796 38 1 8.4980 -1.1799 2.7547 39 1 10.1270 -1.9332 1.0571 40 1 10.9670 -1.4415 2.5477 41 1 12.9865 0.0864 -0.0656 42 1 13.0142 -0.9750 1.3629 43 1 15.2016 -2.5354 -1.2382 44 1 10.1259 -0.4206 -0.8677 45 1 10.9652 1.1446 -0.7428 46 1 8.4962 1.4061 -0.5358 47 1 9.3359 1.8981 0.9548 48 1 5.4841 -0.9043 -0.5582 49 1 6.3171 -1.8806 0.6752 50 1 4.5813 -1.5252 0.8445 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350664405.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:50 Heat of formation + Delta-G solvation = 48.401642 kcal Electronic energy + Delta-G solvation = -29522.646834 eV Core-core repulsion = 25586.417799 eV Total energy + Delta-G solvation = -3936.229036 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -44.16849 -40.35083 -39.08042 -36.91326 -36.23439 -35.94945 -34.46164 -32.25394 -32.00174 -31.05544 -29.45901 -28.44620 -27.20061 -26.67138 -24.59699 -24.33522 -23.91500 -22.55923 -22.25792 -20.70713 -20.06634 -18.87109 -18.39458 -17.79995 -17.54711 -17.37631 -16.91703 -16.63303 -16.01090 -15.91499 -15.79648 -15.71870 -15.06512 -14.97579 -14.74692 -14.45064 -14.28648 -14.20381 -13.86300 -13.67633 -13.61798 -13.08879 -12.97854 -12.96530 -12.85738 -12.82860 -12.53950 -12.34119 -12.22323 -11.99828 -11.91708 -11.90833 -11.81708 -11.62346 -11.52403 -11.35105 -11.16181 -10.58420 -10.27422 -10.13685 -9.94254 -9.05230 -8.13538 -6.32794 0.47592 1.01050 1.17674 1.39812 1.40823 1.48942 1.63331 2.39293 2.58734 3.12005 3.13541 3.27863 3.36264 3.50434 3.70487 3.81475 3.83641 4.04143 4.05868 4.15831 4.19037 4.23622 4.31506 4.37054 4.44433 4.49400 4.51960 4.61006 4.63222 4.69914 4.75700 4.84111 4.93133 4.98839 5.03804 5.11842 5.16331 5.19509 5.22183 5.35054 5.37953 5.41756 5.56334 5.60023 5.72047 5.75775 6.01707 6.11983 6.24599 6.45820 6.48643 6.86606 7.38626 7.52911 8.89191 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.017945 B = 0.002477 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.946098 B =11301.215945 C =12267.475723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.116 4.116 3 C -0.106 4.106 4 C -0.213 4.213 5 C 0.234 3.766 6 H 0.143 0.857 7 O -0.549 6.549 8 C 0.155 3.845 9 N -0.310 5.310 10 N -0.340 5.340 11 C 0.348 3.652 12 N -0.461 5.461 13 C 0.083 3.917 14 C 0.071 3.929 15 N -0.546 5.546 16 C 0.201 3.799 17 C -0.553 4.553 18 H 0.061 0.939 19 C 0.011 3.989 20 N -0.927 5.927 21 Si 0.958 3.042 22 H -0.269 1.269 23 H -0.286 1.286 24 H -0.269 1.269 25 C 0.072 3.928 26 C 0.086 3.914 27 N -0.455 5.455 28 C 0.067 3.933 29 H 0.050 0.950 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.089 0.911 33 H 0.075 0.925 34 H 0.129 0.871 35 H 0.112 0.888 36 H 0.395 0.605 37 H 0.044 0.956 38 H 0.089 0.911 39 H 0.039 0.961 40 H 0.075 0.925 41 H 0.009 0.991 42 H 0.006 0.994 43 H 0.264 0.736 44 H 0.037 0.963 45 H 0.073 0.927 46 H 0.086 0.914 47 H 0.047 0.953 48 H 0.098 0.902 49 H 0.096 0.904 50 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.985 2.204 0.545 29.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.153 4.153 3 C -0.124 4.124 4 C -0.233 4.233 5 C 0.172 3.828 6 H 0.160 0.840 7 O -0.355 6.355 8 C -0.114 4.114 9 N -0.152 5.152 10 N -0.184 5.184 11 C -0.009 4.009 12 N -0.187 5.187 13 C -0.044 4.044 14 C -0.058 4.058 15 N -0.270 5.270 16 C 0.074 3.926 17 C -0.592 4.592 18 H 0.080 0.920 19 C -0.189 4.189 20 N -0.567 5.567 21 Si 0.783 3.217 22 H -0.194 1.194 23 H -0.211 1.211 24 H -0.194 1.194 25 C -0.057 4.057 26 C -0.041 4.041 27 N -0.148 5.148 28 C -0.074 4.074 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.107 0.893 33 H 0.093 0.907 34 H 0.147 0.853 35 H 0.130 0.870 36 H 0.245 0.755 37 H 0.063 0.937 38 H 0.107 0.893 39 H 0.057 0.943 40 H 0.093 0.907 41 H 0.027 0.973 42 H 0.024 0.976 43 H 0.073 0.927 44 H 0.055 0.945 45 H 0.092 0.908 46 H 0.105 0.895 47 H 0.065 0.935 48 H 0.116 0.884 49 H 0.114 0.886 50 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -28.704 2.782 1.224 28.865 hybrid contribution 0.827 -1.081 -1.246 1.845 sum -27.877 1.702 -0.023 27.929 Atomic orbital electron populations 1.21678 0.94049 1.02503 1.02122 1.20977 0.97248 0.93657 1.03410 1.23181 0.94442 0.98597 0.96221 1.23088 1.01620 0.99609 0.98939 1.19465 0.78735 1.00913 0.83655 0.83997 1.86569 1.78380 1.40833 1.29749 1.26177 0.97250 0.89629 0.98310 1.73799 0.97696 1.22345 1.21344 1.74579 1.10747 1.15870 1.17246 1.22465 0.87050 0.92362 0.99067 1.58979 1.00339 1.35684 1.23692 1.22177 0.93227 0.99014 0.90028 1.21920 0.92358 0.93686 0.97789 1.62609 1.05129 1.36158 1.23121 1.19400 0.86641 0.92794 0.93728 1.21924 0.93313 1.14469 1.29521 0.92049 1.25827 0.94816 1.00290 0.97936 1.70062 0.99462 1.42187 1.44954 0.85610 0.77380 0.79546 0.79161 1.19388 1.21146 1.19367 1.21904 0.92385 0.98691 0.92694 1.22118 0.93053 0.92073 0.96890 1.46390 1.04984 1.22400 1.41007 1.22457 1.04806 0.82937 0.97201 0.93047 0.92040 0.91553 0.89282 0.90680 0.85325 0.86982 0.75471 0.93712 0.89290 0.94263 0.90702 0.97316 0.97604 0.92680 0.94464 0.90824 0.89545 0.93459 0.88396 0.88554 0.86368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.89 71.98 0.71 -0.31 16 2 C -0.12 -0.86 6.05 29.85 0.18 -0.68 16 3 C -0.11 -1.08 9.51 25.64 0.24 -0.84 16 4 C -0.21 -3.00 9.09 25.64 0.23 -2.77 16 5 C 0.23 3.74 3.40 29.10 0.10 3.84 16 6 H 0.14 1.64 4.00 -2.39 -0.01 1.63 16 7 O -0.55 -9.83 13.31 -148.98 -1.98 -11.81 16 8 C 0.16 3.63 6.91 137.64 0.95 4.58 16 9 N -0.31 -9.43 12.10 -49.54 -0.60 -10.03 16 10 N -0.34 -11.62 12.09 -58.00 -0.70 -12.32 16 11 C 0.35 10.41 6.50 260.11 1.69 12.10 16 12 N -0.46 -14.19 4.73 -705.57 -3.33 -17.53 16 13 C 0.08 2.64 5.55 86.31 0.48 3.12 16 14 C 0.07 2.68 5.25 86.31 0.45 3.13 16 15 N -0.55 -23.24 4.92 -900.29 -4.43 -27.66 16 16 C 0.20 10.37 5.14 85.56 0.44 10.81 16 17 C -0.55 -29.55 7.67 25.60 0.20 -29.35 16 18 H 0.06 3.19 5.81 -2.91 -0.02 3.17 16 19 C 0.01 0.59 5.46 84.66 0.46 1.05 16 20 N -0.93 -54.32 13.29 21.45 0.28 -54.04 16 21 Si 0.96 42.56 29.54 68.60 2.03 44.58 16 22 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 23 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 24 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 25 C 0.07 2.74 5.31 86.31 0.46 3.20 16 26 C 0.09 2.79 5.47 86.31 0.47 3.26 16 27 N -0.46 -10.46 3.21 -538.18 -1.73 -12.19 16 28 C 0.07 0.92 11.07 127.77 1.41 2.33 16 29 H 0.05 0.44 8.14 -2.38 -0.02 0.42 16 30 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.07 0.56 5.26 -2.38 -0.01 0.54 16 34 H 0.13 1.05 8.06 -2.91 -0.02 1.03 16 35 H 0.11 1.78 8.06 -2.91 -0.02 1.76 16 36 H 0.39 5.97 8.96 -74.06 -0.66 5.31 16 37 H 0.04 1.54 8.14 -2.39 -0.02 1.53 16 38 H 0.09 2.50 8.13 -2.39 -0.02 2.48 16 39 H 0.04 1.57 6.51 -2.39 -0.02 1.56 16 40 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 41 H 0.01 0.49 8.13 -2.39 -0.02 0.47 16 42 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 43 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 44 H 0.04 1.52 6.89 -2.39 -0.02 1.50 16 45 H 0.07 2.81 8.13 -2.38 -0.02 2.79 16 46 H 0.09 2.53 8.13 -2.39 -0.02 2.51 16 47 H 0.05 1.65 8.11 -2.39 -0.02 1.63 16 48 H 0.10 1.11 8.14 -2.38 -0.02 1.09 16 49 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 50 H 0.12 0.82 6.94 -2.39 -0.02 0.80 16 Total: -1.00 -69.50 399.48 -1.70 -71.20 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: 0.28 Total: 16.32 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: 8.49 Total: 13.48 kcal Atomic # 7 Polarization: -123.26 SS G_CDS: -10.50 Total: -133.76 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: -1.98 Total: -11.81 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.58 kcal Total: -69.50 -1.70 -71.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350664405.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.598 kcal (2) G-P(sol) polarization free energy of solvation -69.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds