Wall clock time and date at job start Tue Mar 31 2020 20:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50705 * 109.47088 * 2 1 4 4 C 1.30998 * 119.99903 * 125.00494 * 3 2 1 5 5 C 1.50692 * 119.99947 * 180.02562 * 4 3 2 6 6 H 1.08998 * 109.47422 * 359.97438 * 5 4 3 7 7 O 1.42900 * 109.47023 * 239.99582 * 5 4 3 8 8 C 1.50697 * 109.47543 * 119.99764 * 5 4 3 9 9 N 1.30297 * 126.34863 * 74.97055 * 8 5 4 10 10 N 1.28525 * 110.05410 * 180.02562 * 9 8 5 11 11 C 1.31223 * 109.86274 * 0.02562 * 10 9 8 12 12 N 1.38575 * 126.47394 * 179.97438 * 11 10 9 13 13 C 1.46959 * 111.00036 * 0.02562 * 12 11 10 14 14 C 1.53058 * 109.36419 * 183.18916 * 13 12 11 15 15 N 1.46955 * 109.36051 * 301.59955 * 14 13 12 16 16 C 1.46906 * 110.99744 * 183.18754 * 15 14 13 17 17 C 1.50703 * 109.47109 * 169.99905 * 16 15 14 18 18 H 1.08005 * 119.99876 * 0.02562 * 17 16 15 19 19 C 1.37875 * 119.99989 * 180.02562 * 17 16 15 20 20 N 1.31518 * 119.99944 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99979 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47454 * 59.99696 * 21 19 17 23 23 H 1.48506 * 109.47297 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.46926 * 299.99488 * 21 19 17 25 25 C 1.46959 * 110.88319 * 59.32174 * 15 14 13 26 26 C 1.46959 * 110.99990 * 123.82556 * 12 11 10 27 27 N 1.36446 * 107.04956 * 0.22812 * 11 10 9 28 28 C 1.46502 * 127.13680 * 179.77165 * 27 11 10 29 29 H 1.08995 * 109.47290 * 59.99830 * 1 2 3 30 30 H 1.08998 * 109.46598 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46943 * 299.99830 * 1 2 3 32 32 H 1.09000 * 109.46943 * 240.00170 * 2 1 3 33 33 H 1.08995 * 109.47290 * 120.00170 * 2 1 3 34 34 H 1.07997 * 119.99584 * 305.00152 * 3 2 1 35 35 H 1.08005 * 119.99951 * 359.97438 * 4 3 2 36 36 H 0.96701 * 114.00037 * 300.00070 * 7 5 4 37 37 H 1.08995 * 109.48972 * 63.22090 * 13 12 11 38 38 H 1.08993 * 109.50763 * 303.16799 * 13 12 11 39 39 H 1.08994 * 109.48935 * 181.63483 * 14 13 12 40 40 H 1.08999 * 109.48934 * 61.56553 * 14 13 12 41 41 H 1.08992 * 109.47459 * 289.99824 * 16 15 14 42 42 H 1.09004 * 109.47040 * 49.99975 * 16 15 14 43 43 H 0.96997 * 119.99752 * 180.02562 * 20 19 17 44 44 H 1.08995 * 109.48972 * 60.64434 * 25 15 14 45 45 H 1.08998 * 109.48999 * 180.71033 * 25 15 14 46 46 H 1.08999 * 109.48803 * 296.77756 * 26 12 11 47 47 H 1.09000 * 109.48812 * 56.82393 * 26 12 11 48 48 H 1.09006 * 109.47251 * 89.99872 * 28 27 11 49 49 H 1.08998 * 109.47677 * 209.99622 * 28 27 11 50 50 H 1.08995 * 109.47089 * 330.00266 * 28 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.8643 1.8214 0.9293 5 6 3.3661 3.2423 0.9296 6 1 2.9316 3.7814 0.0878 7 8 4.7903 3.2445 0.8120 8 6 2.9675 3.9157 2.2175 9 7 3.5079 3.7255 3.3878 10 7 2.9254 4.4602 4.2669 11 6 1.9739 5.1639 3.7000 12 7 1.1311 6.0668 4.3285 13 6 1.4316 6.1561 5.7643 14 6 0.4306 7.1003 6.4344 15 7 0.5087 8.4234 5.7996 16 6 -0.3847 9.3805 6.4658 17 6 -0.1017 10.7703 5.9565 18 1 0.6649 10.9269 5.2120 19 6 -0.8214 11.8419 6.4409 20 7 -1.7552 11.6511 7.3472 21 14 -0.4710 13.5645 5.8091 22 1 -0.7020 13.6106 4.3429 23 1 -1.3740 14.5321 6.4826 24 1 0.9413 13.9204 6.0991 25 6 0.2082 8.3341 4.3638 26 6 1.2092 7.3899 3.6937 27 7 1.9673 4.8346 2.3759 28 6 1.0760 5.3592 1.3384 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.7065 2.1087 -0.7662 35 1 3.1898 1.1336 1.6956 36 1 5.2449 2.7812 1.5288 37 1 2.4421 6.5408 5.9011 38 1 1.3553 5.1664 6.2143 39 1 0.6693 7.1908 7.4941 40 1 -0.5775 6.7015 6.3212 41 1 -1.4212 9.1194 6.2523 42 1 -0.2159 9.3465 7.5422 43 1 -2.2617 12.4050 7.6877 44 1 -0.8023 7.9493 4.2270 45 1 0.2848 9.3239 3.9140 46 1 2.2173 7.7887 3.8070 47 1 0.9708 7.2994 2.6340 48 1 1.5233 6.2461 0.8895 49 1 0.9254 4.6002 0.5707 50 1 0.1161 5.6219 1.7829 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350664406.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:55 Heat of formation + Delta-G solvation = 63.479877 kcal Electronic energy + Delta-G solvation = -29229.952617 eV Core-core repulsion = 25294.377423 eV Total energy + Delta-G solvation = -3935.575194 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.11100 -39.06564 -38.07115 -35.77121 -35.49911 -34.93973 -32.59938 -31.78572 -30.74013 -29.99366 -28.30037 -27.45205 -26.33815 -25.14288 -23.60294 -22.95567 -22.02603 -21.24418 -20.93654 -20.31364 -19.42380 -17.84429 -17.13227 -16.58639 -16.45301 -16.25499 -15.81739 -15.35236 -14.89531 -14.62935 -14.53452 -14.35706 -14.29087 -14.05540 -13.64896 -13.59959 -13.39121 -13.21651 -13.06397 -12.60465 -12.24353 -12.12701 -11.94588 -11.84081 -11.62721 -11.48110 -11.37372 -11.08925 -10.91967 -10.87937 -10.79564 -10.66145 -10.52133 -10.45641 -10.26912 -9.88496 -9.81886 -9.66044 -9.26629 -8.49566 -8.22500 -7.38033 -6.08560 -4.10761 1.44312 1.76489 2.09872 2.74978 3.28821 3.33790 3.36178 3.63214 3.94911 4.07250 4.20846 4.35221 4.36281 4.44620 4.62698 4.73228 4.76011 4.85511 4.87217 4.89171 4.95119 5.04018 5.10924 5.26598 5.30246 5.32536 5.46849 5.52326 5.56314 5.57427 5.60401 5.69651 5.75179 5.75969 5.88648 6.07358 6.12304 6.23888 6.30028 6.34197 6.43110 6.47264 6.72739 7.14014 7.16378 7.19613 7.25134 7.70758 7.97920 8.08512 8.44133 8.68167 8.95884 9.53756 11.02105 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.020353 B = 0.002196 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.372718 B =12749.411744 C =12825.786554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.098 4.098 3 C -0.129 4.129 4 C -0.189 4.189 5 C 0.240 3.760 6 H 0.112 0.888 7 O -0.540 6.540 8 C 0.132 3.868 9 N -0.272 5.272 10 N -0.322 5.322 11 C 0.378 3.622 12 N -0.453 5.453 13 C 0.078 3.922 14 C 0.054 3.946 15 N -0.538 5.538 16 C 0.194 3.806 17 C -0.511 4.511 18 H 0.062 0.938 19 C 0.056 3.944 20 N -0.897 5.897 21 Si 0.899 3.101 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.276 1.276 25 C 0.069 3.931 26 C 0.054 3.946 27 N -0.478 5.478 28 C 0.071 3.929 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.111 0.889 35 H 0.121 0.879 36 H 0.390 0.610 37 H 0.061 0.939 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.034 0.966 41 H -0.007 1.007 42 H 0.033 0.967 43 H 0.263 0.737 44 H 0.033 0.967 45 H 0.096 0.904 46 H 0.056 0.944 47 H 0.075 0.925 48 H 0.083 0.917 49 H 0.088 0.912 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.038 -20.605 -16.637 26.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.136 4.136 3 C -0.147 4.147 4 C -0.208 4.208 5 C 0.178 3.822 6 H 0.130 0.870 7 O -0.345 6.345 8 C -0.137 4.137 9 N -0.112 5.112 10 N -0.168 5.168 11 C 0.022 3.978 12 N -0.177 5.177 13 C -0.048 4.048 14 C -0.075 4.075 15 N -0.264 5.264 16 C 0.070 3.930 17 C -0.550 4.550 18 H 0.080 0.920 19 C -0.145 4.145 20 N -0.536 5.536 21 Si 0.726 3.274 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.201 1.201 25 C -0.060 4.060 26 C -0.073 4.073 27 N -0.175 5.175 28 C -0.072 4.072 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.129 0.871 35 H 0.139 0.861 36 H 0.239 0.761 37 H 0.080 0.920 38 H 0.104 0.896 39 H 0.102 0.898 40 H 0.052 0.948 41 H 0.011 0.989 42 H 0.051 0.949 43 H 0.072 0.928 44 H 0.052 0.948 45 H 0.114 0.886 46 H 0.074 0.926 47 H 0.093 0.907 48 H 0.101 0.899 49 H 0.107 0.893 50 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 5.659 -20.660 -15.975 26.722 hybrid contribution -1.011 1.223 -0.697 1.733 sum 4.647 -19.437 -16.672 26.026 Atomic orbital electron populations 1.21721 0.94847 1.01973 1.02146 1.20684 0.96351 0.93784 1.02733 1.22936 0.96443 0.97655 0.97689 1.23342 1.00485 0.96663 1.00318 1.18900 0.82492 0.91492 0.89324 0.86999 1.86597 1.15930 1.79895 1.52033 1.25349 0.92386 0.96593 0.99335 1.73796 1.22252 1.18826 0.96336 1.74658 1.06857 1.11496 1.23777 1.22905 0.93927 0.99483 0.81492 1.58936 1.44940 1.08010 1.05776 1.22200 0.99642 1.00625 0.82356 1.22169 0.96821 0.89735 0.98760 1.62325 1.55922 1.06569 1.01570 1.19717 0.88967 0.89773 0.94587 1.21088 1.19140 0.91078 1.23647 0.91975 1.24989 0.95085 0.99327 0.95140 1.69944 1.22871 1.31512 1.29280 0.86555 0.78233 0.83724 0.78851 1.20309 1.21329 1.20137 1.22004 0.95003 0.98540 0.90442 1.22585 1.01224 0.85624 0.97827 1.45937 1.28925 1.34015 1.08596 1.22189 0.94444 1.00467 0.90079 0.92504 0.92335 0.92548 0.90662 0.91301 0.87062 0.86090 0.76097 0.92018 0.89568 0.89815 0.94784 0.98883 0.94908 0.92786 0.94848 0.88609 0.92599 0.90710 0.89895 0.89314 0.88248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 9.90 37.16 0.37 -0.45 16 2 C -0.10 -0.55 6.38 -27.88 -0.18 -0.73 16 3 C -0.13 -0.82 9.12 -36.02 -0.33 -1.15 16 4 C -0.19 -1.47 8.70 -36.03 -0.31 -1.78 16 5 C 0.24 2.15 3.68 -29.04 -0.11 2.04 16 6 H 0.11 0.80 6.94 -51.93 -0.36 0.44 16 7 O -0.54 -5.28 13.31 -35.23 -0.47 -5.75 16 8 C 0.13 1.62 6.91 -154.01 -1.06 0.56 16 9 N -0.27 -4.16 12.10 32.99 0.40 -3.76 16 10 N -0.32 -5.47 11.30 30.31 0.34 -5.13 16 11 C 0.38 5.74 7.22 -318.89 -2.30 3.44 16 12 N -0.45 -6.91 4.75 -174.36 -0.83 -7.74 16 13 C 0.08 1.26 4.99 -3.76 -0.02 1.24 16 14 C 0.05 0.96 5.61 -3.76 -0.02 0.94 16 15 N -0.54 -11.15 4.70 -235.91 -1.11 -12.26 16 16 C 0.19 4.88 4.72 -4.97 -0.02 4.86 16 17 C -0.51 -13.84 8.47 -34.44 -0.29 -14.14 16 18 H 0.06 1.65 7.13 -52.48 -0.37 1.28 16 19 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 20 N -0.90 -26.06 13.29 55.43 0.74 -25.33 16 21 Si 0.90 21.12 29.54 -169.99 -5.02 16.09 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 23 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 C 0.07 1.24 5.43 -3.77 -0.02 1.22 16 26 C 0.05 0.81 5.43 -3.77 -0.02 0.79 16 27 N -0.48 -5.79 3.21 -121.46 -0.39 -6.18 16 28 C 0.07 0.55 9.11 59.85 0.55 1.10 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.41 7.79 -51.93 -0.40 0.00 16 34 H 0.11 0.56 7.83 -52.49 -0.41 0.15 16 35 H 0.12 0.99 7.84 -52.48 -0.41 0.57 16 36 H 0.39 3.07 8.96 45.56 0.41 3.48 16 37 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.09 1.32 8.02 -51.93 -0.42 0.90 16 39 H 0.08 1.44 8.07 -51.93 -0.42 1.02 16 40 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 41 H -0.01 -0.18 8.12 -51.93 -0.42 -0.60 16 42 H 0.03 0.88 8.03 -51.93 -0.42 0.47 16 43 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 44 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 45 H 0.10 1.83 6.79 -51.93 -0.35 1.47 16 46 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 47 H 0.07 0.89 5.35 -51.93 -0.28 0.62 16 48 H 0.08 0.54 7.80 -51.93 -0.40 0.14 16 49 H 0.09 0.45 7.53 -51.93 -0.39 0.06 16 50 H 0.10 0.78 7.65 -51.93 -0.40 0.39 16 LS Contribution 401.93 15.07 6.06 6.06 Total: -1.00 -32.83 401.93 -11.72 -44.55 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -7.57 Total: 0.04 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: -3.87 Total: -0.61 kcal Atomic # 7 Polarization: -59.54 SS G_CDS: -0.85 Total: -60.39 kcal Atomic # 8 Polarization: -5.28 SS G_CDS: -0.47 Total: -5.75 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -32.83 -11.72 -44.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350664406.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.034 kcal (2) G-P(sol) polarization free energy of solvation -32.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds