Wall clock time and date at job start Tue Mar 31 2020 20:26:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 C 1.50705 * 109.47088 * 2 1
4 4 C 1.30998 * 119.99903 * 125.00494 * 3 2 1
5 5 C 1.50692 * 119.99947 * 180.02562 * 4 3 2
6 6 H 1.08998 * 109.47422 * 359.97438 * 5 4 3
7 7 O 1.42900 * 109.47023 * 239.99582 * 5 4 3
8 8 C 1.50697 * 109.47543 * 119.99764 * 5 4 3
9 9 N 1.30297 * 126.34863 * 74.97055 * 8 5 4
10 10 N 1.28525 * 110.05410 * 180.02562 * 9 8 5
11 11 C 1.31223 * 109.86274 * 0.02562 * 10 9 8
12 12 N 1.38575 * 126.47394 * 179.97438 * 11 10 9
13 13 C 1.46959 * 111.00036 * 0.02562 * 12 11 10
14 14 C 1.53058 * 109.36419 * 183.18916 * 13 12 11
15 15 N 1.46955 * 109.36051 * 301.59955 * 14 13 12
16 16 C 1.46906 * 110.99744 * 183.18754 * 15 14 13
17 17 C 1.50703 * 109.47109 * 169.99905 * 16 15 14
18 18 H 1.08005 * 119.99876 * 0.02562 * 17 16 15
19 19 C 1.37875 * 119.99989 * 180.02562 * 17 16 15
20 20 N 1.31518 * 119.99944 * 359.97438 * 19 17 16
21 21 Si 1.86798 * 119.99979 * 180.02562 * 19 17 16
22 22 H 1.48500 * 109.47454 * 59.99696 * 21 19 17
23 23 H 1.48506 * 109.47297 * 179.97438 * 21 19 17
24 24 H 1.48503 * 109.46926 * 299.99488 * 21 19 17
25 25 C 1.46959 * 110.88319 * 59.32174 * 15 14 13
26 26 C 1.46959 * 110.99990 * 123.82556 * 12 11 10
27 27 N 1.36446 * 107.04956 * 0.22812 * 11 10 9
28 28 C 1.46502 * 127.13680 * 179.77165 * 27 11 10
29 29 H 1.08995 * 109.47290 * 59.99830 * 1 2 3
30 30 H 1.08998 * 109.46598 * 179.97438 * 1 2 3
31 31 H 1.09000 * 109.46943 * 299.99830 * 1 2 3
32 32 H 1.09000 * 109.46943 * 240.00170 * 2 1 3
33 33 H 1.08995 * 109.47290 * 120.00170 * 2 1 3
34 34 H 1.07997 * 119.99584 * 305.00152 * 3 2 1
35 35 H 1.08005 * 119.99951 * 359.97438 * 4 3 2
36 36 H 0.96701 * 114.00037 * 300.00070 * 7 5 4
37 37 H 1.08995 * 109.48972 * 63.22090 * 13 12 11
38 38 H 1.08993 * 109.50763 * 303.16799 * 13 12 11
39 39 H 1.08994 * 109.48935 * 181.63483 * 14 13 12
40 40 H 1.08999 * 109.48934 * 61.56553 * 14 13 12
41 41 H 1.08992 * 109.47459 * 289.99824 * 16 15 14
42 42 H 1.09004 * 109.47040 * 49.99975 * 16 15 14
43 43 H 0.96997 * 119.99752 * 180.02562 * 20 19 17
44 44 H 1.08995 * 109.48972 * 60.64434 * 25 15 14
45 45 H 1.08998 * 109.48999 * 180.71033 * 25 15 14
46 46 H 1.08999 * 109.48803 * 296.77756 * 26 12 11
47 47 H 1.09000 * 109.48812 * 56.82393 * 26 12 11
48 48 H 1.09006 * 109.47251 * 89.99872 * 28 27 11
49 49 H 1.08998 * 109.47677 * 209.99622 * 28 27 11
50 50 H 1.08995 * 109.47089 * 330.00266 * 28 27 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0324 1.4209 0.0000
4 6 2.8643 1.8214 0.9293
5 6 3.3661 3.2423 0.9296
6 1 2.9316 3.7814 0.0878
7 8 4.7903 3.2445 0.8120
8 6 2.9675 3.9157 2.2175
9 7 3.5079 3.7255 3.3878
10 7 2.9254 4.4602 4.2669
11 6 1.9739 5.1639 3.7000
12 7 1.1311 6.0668 4.3285
13 6 1.4316 6.1561 5.7643
14 6 0.4306 7.1003 6.4344
15 7 0.5087 8.4234 5.7996
16 6 -0.3847 9.3805 6.4658
17 6 -0.1017 10.7703 5.9565
18 1 0.6649 10.9269 5.2120
19 6 -0.8214 11.8419 6.4409
20 7 -1.7552 11.6511 7.3472
21 14 -0.4710 13.5645 5.8091
22 1 -0.7020 13.6106 4.3429
23 1 -1.3740 14.5321 6.4826
24 1 0.9413 13.9204 6.0991
25 6 0.2082 8.3341 4.3638
26 6 1.2092 7.3899 3.6937
27 7 1.9673 4.8346 2.3759
28 6 1.0760 5.3592 1.3384
29 1 -0.3633 0.5138 -0.8899
30 1 -0.3632 -1.0277 -0.0005
31 1 -0.3633 0.5138 0.8900
32 1 1.8933 -0.5138 -0.8900
33 1 1.8934 -0.5138 0.8899
34 1 1.7065 2.1087 -0.7662
35 1 3.1898 1.1336 1.6956
36 1 5.2449 2.7812 1.5288
37 1 2.4421 6.5408 5.9011
38 1 1.3553 5.1664 6.2143
39 1 0.6693 7.1908 7.4941
40 1 -0.5775 6.7015 6.3212
41 1 -1.4212 9.1194 6.2523
42 1 -0.2159 9.3465 7.5422
43 1 -2.2617 12.4050 7.6877
44 1 -0.8023 7.9493 4.2270
45 1 0.2848 9.3239 3.9140
46 1 2.2173 7.7887 3.8070
47 1 0.9708 7.2994 2.6340
48 1 1.5233 6.2461 0.8895
49 1 0.9254 4.6002 0.5707
50 1 0.1161 5.6219 1.7829
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001350664406.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 20:26:55
Heat of formation + Delta-G solvation = 63.479877 kcal
Electronic energy + Delta-G solvation = -29229.952617 eV
Core-core repulsion = 25294.377423 eV
Total energy + Delta-G solvation = -3935.575194 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 335.206 amu
Computer time = 0.96 seconds
Orbital eigenvalues (eV)
-43.11100 -39.06564 -38.07115 -35.77121 -35.49911 -34.93973 -32.59938 -31.78572
-30.74013 -29.99366 -28.30037 -27.45205 -26.33815 -25.14288 -23.60294 -22.95567
-22.02603 -21.24418 -20.93654 -20.31364 -19.42380 -17.84429 -17.13227 -16.58639
-16.45301 -16.25499 -15.81739 -15.35236 -14.89531 -14.62935 -14.53452 -14.35706
-14.29087 -14.05540 -13.64896 -13.59959 -13.39121 -13.21651 -13.06397 -12.60465
-12.24353 -12.12701 -11.94588 -11.84081 -11.62721 -11.48110 -11.37372 -11.08925
-10.91967 -10.87937 -10.79564 -10.66145 -10.52133 -10.45641 -10.26912 -9.88496
-9.81886 -9.66044 -9.26629 -8.49566 -8.22500 -7.38033 -6.08560 -4.10761
1.44312 1.76489 2.09872 2.74978 3.28821 3.33790 3.36178 3.63214
3.94911 4.07250 4.20846 4.35221 4.36281 4.44620 4.62698 4.73228
4.76011 4.85511 4.87217 4.89171 4.95119 5.04018 5.10924 5.26598
5.30246 5.32536 5.46849 5.52326 5.56314 5.57427 5.60401 5.69651
5.75179 5.75969 5.88648 6.07358 6.12304 6.23888 6.30028 6.34197
6.43110 6.47264 6.72739 7.14014 7.16378 7.19613 7.25134 7.70758
7.97920 8.08512 8.44133 8.68167 8.95884 9.53756 11.02105
Molecular weight = 335.21amu
Principal moments of inertia in cm(-1)
A = 0.020353 B = 0.002196 C = 0.002183
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1375.372718 B =12749.411744 C =12825.786554
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C -0.098 4.098
3 C -0.129 4.129
4 C -0.189 4.189
5 C 0.240 3.760
6 H 0.112 0.888
7 O -0.540 6.540
8 C 0.132 3.868
9 N -0.272 5.272
10 N -0.322 5.322
11 C 0.378 3.622
12 N -0.453 5.453
13 C 0.078 3.922
14 C 0.054 3.946
15 N -0.538 5.538
16 C 0.194 3.806
17 C -0.511 4.511
18 H 0.062 0.938
19 C 0.056 3.944
20 N -0.897 5.897
21 Si 0.899 3.101
22 H -0.277 1.277
23 H -0.288 1.288
24 H -0.276 1.276
25 C 0.069 3.931
26 C 0.054 3.946
27 N -0.478 5.478
28 C 0.071 3.929
29 H 0.056 0.944
30 H 0.058 0.942
31 H 0.055 0.945
32 H 0.075 0.925
33 H 0.068 0.932
34 H 0.111 0.889
35 H 0.121 0.879
36 H 0.390 0.610
37 H 0.061 0.939
38 H 0.086 0.914
39 H 0.084 0.916
40 H 0.034 0.966
41 H -0.007 1.007
42 H 0.033 0.967
43 H 0.263 0.737
44 H 0.033 0.967
45 H 0.096 0.904
46 H 0.056 0.944
47 H 0.075 0.925
48 H 0.083 0.917
49 H 0.088 0.912
50 H 0.099 0.901
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.038 -20.605 -16.637 26.958
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.136 4.136
3 C -0.147 4.147
4 C -0.208 4.208
5 C 0.178 3.822
6 H 0.130 0.870
7 O -0.345 6.345
8 C -0.137 4.137
9 N -0.112 5.112
10 N -0.168 5.168
11 C 0.022 3.978
12 N -0.177 5.177
13 C -0.048 4.048
14 C -0.075 4.075
15 N -0.264 5.264
16 C 0.070 3.930
17 C -0.550 4.550
18 H 0.080 0.920
19 C -0.145 4.145
20 N -0.536 5.536
21 Si 0.726 3.274
22 H -0.203 1.203
23 H -0.213 1.213
24 H -0.201 1.201
25 C -0.060 4.060
26 C -0.073 4.073
27 N -0.175 5.175
28 C -0.072 4.072
29 H 0.075 0.925
30 H 0.077 0.923
31 H 0.075 0.925
32 H 0.093 0.907
33 H 0.087 0.913
34 H 0.129 0.871
35 H 0.139 0.861
36 H 0.239 0.761
37 H 0.080 0.920
38 H 0.104 0.896
39 H 0.102 0.898
40 H 0.052 0.948
41 H 0.011 0.989
42 H 0.051 0.949
43 H 0.072 0.928
44 H 0.052 0.948
45 H 0.114 0.886
46 H 0.074 0.926
47 H 0.093 0.907
48 H 0.101 0.899
49 H 0.107 0.893
50 H 0.118 0.882
Dipole moment (debyes) X Y Z Total
from point charges 5.659 -20.660 -15.975 26.722
hybrid contribution -1.011 1.223 -0.697 1.733
sum 4.647 -19.437 -16.672 26.026
Atomic orbital electron populations
1.21721 0.94847 1.01973 1.02146 1.20684 0.96351 0.93784 1.02733
1.22936 0.96443 0.97655 0.97689 1.23342 1.00485 0.96663 1.00318
1.18900 0.82492 0.91492 0.89324 0.86999 1.86597 1.15930 1.79895
1.52033 1.25349 0.92386 0.96593 0.99335 1.73796 1.22252 1.18826
0.96336 1.74658 1.06857 1.11496 1.23777 1.22905 0.93927 0.99483
0.81492 1.58936 1.44940 1.08010 1.05776 1.22200 0.99642 1.00625
0.82356 1.22169 0.96821 0.89735 0.98760 1.62325 1.55922 1.06569
1.01570 1.19717 0.88967 0.89773 0.94587 1.21088 1.19140 0.91078
1.23647 0.91975 1.24989 0.95085 0.99327 0.95140 1.69944 1.22871
1.31512 1.29280 0.86555 0.78233 0.83724 0.78851 1.20309 1.21329
1.20137 1.22004 0.95003 0.98540 0.90442 1.22585 1.01224 0.85624
0.97827 1.45937 1.28925 1.34015 1.08596 1.22189 0.94444 1.00467
0.90079 0.92504 0.92335 0.92548 0.90662 0.91301 0.87062 0.86090
0.76097 0.92018 0.89568 0.89815 0.94784 0.98883 0.94908 0.92786
0.94848 0.88609 0.92599 0.90710 0.89895 0.89314 0.88248
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.81 9.90 37.16 0.37 -0.45 16
2 C -0.10 -0.55 6.38 -27.88 -0.18 -0.73 16
3 C -0.13 -0.82 9.12 -36.02 -0.33 -1.15 16
4 C -0.19 -1.47 8.70 -36.03 -0.31 -1.78 16
5 C 0.24 2.15 3.68 -29.04 -0.11 2.04 16
6 H 0.11 0.80 6.94 -51.93 -0.36 0.44 16
7 O -0.54 -5.28 13.31 -35.23 -0.47 -5.75 16
8 C 0.13 1.62 6.91 -154.01 -1.06 0.56 16
9 N -0.27 -4.16 12.10 32.99 0.40 -3.76 16
10 N -0.32 -5.47 11.30 30.31 0.34 -5.13 16
11 C 0.38 5.74 7.22 -318.89 -2.30 3.44 16
12 N -0.45 -6.91 4.75 -174.36 -0.83 -7.74 16
13 C 0.08 1.26 4.99 -3.76 -0.02 1.24 16
14 C 0.05 0.96 5.61 -3.76 -0.02 0.94 16
15 N -0.54 -11.15 4.70 -235.91 -1.11 -12.26 16
16 C 0.19 4.88 4.72 -4.97 -0.02 4.86 16
17 C -0.51 -13.84 8.47 -34.44 -0.29 -14.14 16
18 H 0.06 1.65 7.13 -52.48 -0.37 1.28 16
19 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16
20 N -0.90 -26.06 13.29 55.43 0.74 -25.33 16
21 Si 0.90 21.12 29.54 -169.99 -5.02 16.09 16
22 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16
23 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16
24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16
25 C 0.07 1.24 5.43 -3.77 -0.02 1.22 16
26 C 0.05 0.81 5.43 -3.77 -0.02 0.79 16
27 N -0.48 -5.79 3.21 -121.46 -0.39 -6.18 16
28 C 0.07 0.55 9.11 59.85 0.55 1.10 16
29 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16
30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16
31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16
32 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16
33 H 0.07 0.41 7.79 -51.93 -0.40 0.00 16
34 H 0.11 0.56 7.83 -52.49 -0.41 0.15 16
35 H 0.12 0.99 7.84 -52.48 -0.41 0.57 16
36 H 0.39 3.07 8.96 45.56 0.41 3.48 16
37 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16
38 H 0.09 1.32 8.02 -51.93 -0.42 0.90 16
39 H 0.08 1.44 8.07 -51.93 -0.42 1.02 16
40 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16
41 H -0.01 -0.18 8.12 -51.93 -0.42 -0.60 16
42 H 0.03 0.88 8.03 -51.93 -0.42 0.47 16
43 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16
44 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16
45 H 0.10 1.83 6.79 -51.93 -0.35 1.47 16
46 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16
47 H 0.07 0.89 5.35 -51.93 -0.28 0.62 16
48 H 0.08 0.54 7.80 -51.93 -0.40 0.14 16
49 H 0.09 0.45 7.53 -51.93 -0.39 0.06 16
50 H 0.10 0.78 7.65 -51.93 -0.40 0.39 16
LS Contribution 401.93 15.07 6.06 6.06
Total: -1.00 -32.83 401.93 -11.72 -44.55
By element:
Atomic # 1 Polarization: 7.61 SS G_CDS: -7.57 Total: 0.04 kcal
Atomic # 6 Polarization: 3.27 SS G_CDS: -3.87 Total: -0.61 kcal
Atomic # 7 Polarization: -59.54 SS G_CDS: -0.85 Total: -60.39 kcal
Atomic # 8 Polarization: -5.28 SS G_CDS: -0.47 Total: -5.75 kcal
Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal
Total LS contribution 6.06 Total: 6.06 kcal
Total: -32.83 -11.72 -44.55 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001350664406.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 108.034 kcal
(2) G-P(sol) polarization free energy of solvation -32.832 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.203 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.723 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.555 kcal
(6) G-S(sol) free energy of system = (1) + (5) 63.480 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.97 seconds