Wall clock time and date at job start Tue Mar 31 2020 20:26:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 C 1.50705 * 109.47088 * 2 1
4 4 C 1.30998 * 119.99903 * 125.00494 * 3 2 1
5 5 C 1.50692 * 119.99947 * 180.02562 * 4 3 2
6 6 H 1.08998 * 109.47422 * 359.97438 * 5 4 3
7 7 O 1.42900 * 109.47023 * 239.99582 * 5 4 3
8 8 C 1.50697 * 109.47543 * 119.99764 * 5 4 3
9 9 N 1.30297 * 126.34863 * 74.97055 * 8 5 4
10 10 N 1.28525 * 110.05410 * 180.02562 * 9 8 5
11 11 C 1.31223 * 109.86274 * 0.02562 * 10 9 8
12 12 N 1.38575 * 126.47394 * 179.97438 * 11 10 9
13 13 C 1.46959 * 111.00036 * 0.02562 * 12 11 10
14 14 C 1.53058 * 109.36419 * 183.18916 * 13 12 11
15 15 N 1.46955 * 109.36051 * 301.59955 * 14 13 12
16 16 C 1.46906 * 110.99744 * 183.18754 * 15 14 13
17 17 C 1.50703 * 109.47109 * 169.99905 * 16 15 14
18 18 H 1.08005 * 119.99876 * 0.02562 * 17 16 15
19 19 C 1.37875 * 119.99989 * 180.02562 * 17 16 15
20 20 N 1.31518 * 119.99944 * 359.97438 * 19 17 16
21 21 Si 1.86798 * 119.99979 * 180.02562 * 19 17 16
22 22 H 1.48500 * 109.47454 * 59.99696 * 21 19 17
23 23 H 1.48506 * 109.47297 * 179.97438 * 21 19 17
24 24 H 1.48503 * 109.46926 * 299.99488 * 21 19 17
25 25 C 1.46959 * 110.88319 * 59.32174 * 15 14 13
26 26 C 1.46959 * 110.99990 * 123.82556 * 12 11 10
27 27 N 1.36446 * 107.04956 * 0.22812 * 11 10 9
28 28 C 1.46502 * 127.13680 * 179.77165 * 27 11 10
29 29 H 1.08995 * 109.47290 * 59.99830 * 1 2 3
30 30 H 1.08998 * 109.46598 * 179.97438 * 1 2 3
31 31 H 1.09000 * 109.46943 * 299.99830 * 1 2 3
32 32 H 1.09000 * 109.46943 * 240.00170 * 2 1 3
33 33 H 1.08995 * 109.47290 * 120.00170 * 2 1 3
34 34 H 1.07997 * 119.99584 * 305.00152 * 3 2 1
35 35 H 1.08005 * 119.99951 * 359.97438 * 4 3 2
36 36 H 0.96701 * 114.00037 * 300.00070 * 7 5 4
37 37 H 1.08995 * 109.48972 * 63.22090 * 13 12 11
38 38 H 1.08993 * 109.50763 * 303.16799 * 13 12 11
39 39 H 1.08994 * 109.48935 * 181.63483 * 14 13 12
40 40 H 1.08999 * 109.48934 * 61.56553 * 14 13 12
41 41 H 1.08992 * 109.47459 * 289.99824 * 16 15 14
42 42 H 1.09004 * 109.47040 * 49.99975 * 16 15 14
43 43 H 0.96997 * 119.99752 * 180.02562 * 20 19 17
44 44 H 1.08995 * 109.48972 * 60.64434 * 25 15 14
45 45 H 1.08998 * 109.48999 * 180.71033 * 25 15 14
46 46 H 1.08999 * 109.48803 * 296.77756 * 26 12 11
47 47 H 1.09000 * 109.48812 * 56.82393 * 26 12 11
48 48 H 1.09006 * 109.47251 * 89.99872 * 28 27 11
49 49 H 1.08998 * 109.47677 * 209.99622 * 28 27 11
50 50 H 1.08995 * 109.47089 * 330.00266 * 28 27 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0324 1.4209 0.0000
4 6 2.8643 1.8214 0.9293
5 6 3.3661 3.2423 0.9296
6 1 2.9316 3.7814 0.0878
7 8 4.7903 3.2445 0.8120
8 6 2.9675 3.9157 2.2175
9 7 3.5079 3.7255 3.3878
10 7 2.9254 4.4602 4.2669
11 6 1.9739 5.1639 3.7000
12 7 1.1311 6.0668 4.3285
13 6 1.4316 6.1561 5.7643
14 6 0.4306 7.1003 6.4344
15 7 0.5087 8.4234 5.7996
16 6 -0.3847 9.3805 6.4658
17 6 -0.1017 10.7703 5.9565
18 1 0.6649 10.9269 5.2120
19 6 -0.8214 11.8419 6.4409
20 7 -1.7552 11.6511 7.3472
21 14 -0.4710 13.5645 5.8091
22 1 -0.7020 13.6106 4.3429
23 1 -1.3740 14.5321 6.4826
24 1 0.9413 13.9204 6.0991
25 6 0.2082 8.3341 4.3638
26 6 1.2092 7.3899 3.6937
27 7 1.9673 4.8346 2.3759
28 6 1.0760 5.3592 1.3384
29 1 -0.3633 0.5138 -0.8899
30 1 -0.3632 -1.0277 -0.0005
31 1 -0.3633 0.5138 0.8900
32 1 1.8933 -0.5138 -0.8900
33 1 1.8934 -0.5138 0.8899
34 1 1.7065 2.1087 -0.7662
35 1 3.1898 1.1336 1.6956
36 1 5.2449 2.7812 1.5288
37 1 2.4421 6.5408 5.9011
38 1 1.3553 5.1664 6.2143
39 1 0.6693 7.1908 7.4941
40 1 -0.5775 6.7015 6.3212
41 1 -1.4212 9.1194 6.2523
42 1 -0.2159 9.3465 7.5422
43 1 -2.2617 12.4050 7.6877
44 1 -0.8023 7.9493 4.2270
45 1 0.2848 9.3239 3.9140
46 1 2.2173 7.7887 3.8070
47 1 0.9708 7.2994 2.6340
48 1 1.5233 6.2461 0.8895
49 1 0.9254 4.6002 0.5707
50 1 0.1161 5.6219 1.7829
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001350664406.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 20:26:54
Heat of formation + Delta-G solvation = 41.422934 kcal
Electronic energy + Delta-G solvation = -29230.909078 eV
Core-core repulsion = 25294.377423 eV
Total energy + Delta-G solvation = -3936.531655 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 335.206 amu
Computer time = 1.05 seconds
Orbital eigenvalues (eV)
-44.14623 -40.40993 -38.80268 -36.95660 -36.27514 -35.98928 -34.58038 -32.47852
-32.10767 -31.11412 -29.59223 -28.54798 -27.18343 -26.75672 -24.79491 -23.81514
-23.59456 -22.49405 -21.84652 -20.94097 -20.75300 -18.79115 -18.47239 -17.96886
-17.62188 -17.28424 -16.72863 -16.60984 -16.02339 -15.96501 -15.77888 -15.71637
-15.33479 -15.00001 -14.83345 -14.61573 -14.31418 -14.11974 -13.90812 -13.65537
-13.44944 -13.18495 -13.09120 -12.90868 -12.78050 -12.65481 -12.56865 -12.38720
-12.34501 -12.24316 -12.22290 -11.90122 -11.71641 -11.65799 -11.38277 -11.33881
-11.16221 -10.88341 -10.60497 -10.21050 -9.39435 -9.10023 -8.20134 -6.30411
0.56164 1.01273 1.24305 1.42407 1.45344 1.53061 1.68242 2.40369
2.52131 3.11364 3.18126 3.19297 3.38842 3.56280 3.62407 3.71065
3.76755 3.94171 3.97948 4.16196 4.20979 4.23766 4.28736 4.30282
4.36155 4.39514 4.44862 4.50294 4.57968 4.64946 4.73426 4.81037
4.86445 4.89849 4.93709 4.98209 5.06984 5.15042 5.18318 5.22553
5.33759 5.39345 5.51091 5.61343 5.63552 5.74820 6.02097 6.05841
6.26510 6.50808 6.54367 6.84541 7.39288 7.61604 8.90672
Molecular weight = 335.21amu
Principal moments of inertia in cm(-1)
A = 0.020353 B = 0.002196 C = 0.002183
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1375.372718 B =12749.411744 C =12825.786554
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C -0.102 4.102
3 C -0.111 4.111
4 C -0.208 4.208
5 C 0.244 3.756
6 H 0.138 0.862
7 O -0.550 6.550
8 C 0.149 3.851
9 N -0.307 5.307
10 N -0.357 5.357
11 C 0.363 3.637
12 N -0.450 5.450
13 C 0.092 3.908
14 C 0.058 3.942
15 N -0.548 5.548
16 C 0.210 3.790
17 C -0.523 4.523
18 H 0.065 0.935
19 C 0.002 3.998
20 N -0.933 5.933
21 Si 0.969 3.031
22 H -0.264 1.264
23 H -0.285 1.285
24 H -0.271 1.271
25 C 0.072 3.928
26 C 0.067 3.933
27 N -0.472 5.472
28 C 0.056 3.944
29 H 0.066 0.934
30 H 0.062 0.938
31 H 0.043 0.957
32 H 0.088 0.912
33 H 0.061 0.939
34 H 0.133 0.867
35 H 0.110 0.890
36 H 0.395 0.605
37 H 0.048 0.952
38 H 0.094 0.906
39 H 0.083 0.917
40 H 0.033 0.967
41 H -0.032 1.032
42 H 0.005 0.995
43 H 0.264 0.736
44 H 0.032 0.968
45 H 0.085 0.915
46 H 0.043 0.957
47 H 0.111 0.889
48 H 0.101 0.899
49 H 0.122 0.878
50 H 0.099 0.901
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.166 -20.941 -19.935 29.370
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.139 4.139
3 C -0.130 4.130
4 C -0.227 4.227
5 C 0.182 3.818
6 H 0.156 0.844
7 O -0.356 6.356
8 C -0.120 4.120
9 N -0.147 5.147
10 N -0.202 5.202
11 C 0.005 3.995
12 N -0.174 5.174
13 C -0.035 4.035
14 C -0.071 4.071
15 N -0.273 5.273
16 C 0.084 3.916
17 C -0.562 4.562
18 H 0.083 0.917
19 C -0.196 4.196
20 N -0.574 5.574
21 Si 0.793 3.207
22 H -0.189 1.189
23 H -0.211 1.211
24 H -0.196 1.196
25 C -0.057 4.057
26 C -0.060 4.060
27 N -0.168 5.168
28 C -0.084 4.084
29 H 0.085 0.915
30 H 0.081 0.919
31 H 0.062 0.938
32 H 0.107 0.893
33 H 0.079 0.921
34 H 0.151 0.849
35 H 0.128 0.872
36 H 0.245 0.755
37 H 0.067 0.933
38 H 0.112 0.888
39 H 0.101 0.899
40 H 0.052 0.948
41 H -0.015 1.015
42 H 0.023 0.977
43 H 0.073 0.927
44 H 0.050 0.950
45 H 0.103 0.897
46 H 0.062 0.938
47 H 0.129 0.871
48 H 0.119 0.881
49 H 0.140 0.860
50 H 0.118 0.882
Dipole moment (debyes) X Y Z Total
from point charges 5.798 -21.023 -19.304 29.124
hybrid contribution -1.051 1.192 0.254 1.610
sum 4.747 -19.831 -19.049 27.905
Atomic orbital electron populations
1.21711 0.94544 1.02330 1.01997 1.20739 0.96531 0.93553 1.03050
1.23180 0.94587 0.98155 0.97030 1.23169 1.02214 0.95997 1.01314
1.19183 0.82202 0.92105 0.88267 0.84416 1.86572 1.16560 1.80102
1.52354 1.26097 0.91075 0.95189 0.99670 1.73724 1.23570 1.19966
0.97448 1.74547 1.07898 1.12398 1.25370 1.22784 0.94127 0.99682
0.82916 1.58916 1.45250 1.08116 1.05155 1.21969 0.98038 1.00183
0.83312 1.22165 0.97378 0.88618 0.98902 1.62226 1.54608 1.07412
1.03099 1.19351 0.88281 0.90647 0.93328 1.21402 1.19071 0.92073
1.23627 0.91704 1.25902 0.94766 1.03688 0.95240 1.70078 1.23928
1.32790 1.30563 0.85446 0.78065 0.78340 0.78819 1.18869 1.21091
1.19633 1.21976 0.96002 0.98958 0.88753 1.22467 0.99362 0.84797
0.99334 1.46174 1.29059 1.33384 1.08175 1.22622 0.93746 1.02346
0.89714 0.91497 0.91862 0.93770 0.89347 0.92058 0.84936 0.87247
0.75473 0.93335 0.88800 0.89893 0.94845 1.01479 0.97652 0.92691
0.94960 0.89682 0.93847 0.87110 0.88088 0.85981 0.88204
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.27 9.90 71.98 0.71 -0.56 16
2 C -0.10 -0.90 6.38 29.85 0.19 -0.71 16
3 C -0.11 -1.07 9.12 25.65 0.23 -0.84 16
4 C -0.21 -2.80 8.70 25.65 0.22 -2.58 16
5 C 0.24 3.75 3.68 29.10 0.11 3.86 16
6 H 0.14 1.38 6.94 -2.39 -0.02 1.36 16
7 O -0.55 -9.80 13.31 -148.98 -1.98 -11.78 16
8 C 0.15 3.42 6.91 137.64 0.95 4.37 16
9 N -0.31 -9.31 12.10 -49.54 -0.60 -9.91 16
10 N -0.36 -12.09 11.30 -58.01 -0.66 -12.75 16
11 C 0.36 10.65 7.22 260.12 1.88 12.53 16
12 N -0.45 -13.40 4.75 -705.55 -3.35 -16.75 16
13 C 0.09 2.98 4.99 86.31 0.43 3.41 16
14 C 0.06 2.10 5.61 86.31 0.48 2.59 16
15 N -0.55 -23.20 4.70 -900.27 -4.23 -27.43 16
16 C 0.21 10.94 4.72 85.56 0.40 11.34 16
17 C -0.52 -28.78 8.47 25.60 0.22 -28.57 16
18 H 0.06 3.46 7.13 -2.91 -0.02 3.44 16
19 C 0.00 0.13 5.46 84.65 0.46 0.59 16
20 N -0.93 -55.27 13.29 21.45 0.28 -54.98 16
21 Si 0.97 43.21 29.54 68.60 2.03 45.24 16
22 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16
23 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16
24 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16
25 C 0.07 2.57 5.43 86.31 0.47 3.04 16
26 C 0.07 1.91 5.43 86.31 0.47 2.38 16
27 N -0.47 -10.36 3.21 -538.18 -1.73 -12.09 16
28 C 0.06 0.66 9.11 127.77 1.16 1.83 16
29 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16
30 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16
31 H 0.04 0.49 8.14 -2.39 -0.02 0.47 16
32 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16
33 H 0.06 0.64 7.79 -2.39 -0.02 0.62 16
34 H 0.13 0.72 7.83 -2.91 -0.02 0.70 16
35 H 0.11 1.72 7.84 -2.91 -0.02 1.69 16
36 H 0.39 5.95 8.96 -74.06 -0.66 5.29 16
37 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16
38 H 0.09 2.89 8.02 -2.39 -0.02 2.87 16
39 H 0.08 2.97 8.07 -2.39 -0.02 2.95 16
40 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16
41 H -0.03 -1.83 8.12 -2.39 -0.02 -1.85 16
42 H 0.01 0.30 8.03 -2.38 -0.02 0.28 16
43 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16
44 H 0.03 1.16 8.14 -2.39 -0.02 1.15 16
45 H 0.08 3.22 6.79 -2.39 -0.02 3.21 16
46 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16
47 H 0.11 2.35 5.35 -2.39 -0.01 2.34 16
48 H 0.10 0.88 7.80 -2.38 -0.02 0.86 16
49 H 0.12 0.63 7.53 -2.39 -0.02 0.61 16
50 H 0.10 1.23 7.65 -2.39 -0.02 1.21 16
Total: -1.00 -72.70 401.93 -1.58 -74.28
By element:
Atomic # 1 Polarization: 13.24 SS G_CDS: 0.27 Total: 13.51 kcal
Atomic # 6 Polarization: 4.28 SS G_CDS: 8.39 Total: 12.68 kcal
Atomic # 7 Polarization: -123.64 SS G_CDS: -10.28 Total: -133.92 kcal
Atomic # 8 Polarization: -9.80 SS G_CDS: -1.98 Total: -11.78 kcal
Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal
Total: -72.70 -1.58 -74.28 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001350664406.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 115.701 kcal
(2) G-P(sol) polarization free energy of solvation -72.701 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.999 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.576 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.278 kcal
(6) G-S(sol) free energy of system = (1) + (5) 41.423 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.05 seconds