Wall clock time and date at job start Tue Mar 31 2020 20:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50705 * 109.47088 * 2 1 4 4 C 1.30998 * 119.99903 * 125.00494 * 3 2 1 5 5 C 1.50692 * 119.99947 * 180.02562 * 4 3 2 6 6 H 1.08998 * 109.47422 * 359.97438 * 5 4 3 7 7 O 1.42900 * 109.47023 * 239.99582 * 5 4 3 8 8 C 1.50697 * 109.47543 * 119.99764 * 5 4 3 9 9 N 1.30297 * 126.34863 * 74.97055 * 8 5 4 10 10 N 1.28525 * 110.05410 * 180.02562 * 9 8 5 11 11 C 1.31223 * 109.86274 * 0.02562 * 10 9 8 12 12 N 1.38575 * 126.47394 * 179.97438 * 11 10 9 13 13 C 1.46959 * 111.00036 * 0.02562 * 12 11 10 14 14 C 1.53058 * 109.36419 * 183.18916 * 13 12 11 15 15 N 1.46955 * 109.36051 * 301.59955 * 14 13 12 16 16 C 1.46906 * 110.99744 * 183.18754 * 15 14 13 17 17 C 1.50703 * 109.47109 * 169.99905 * 16 15 14 18 18 H 1.08005 * 119.99876 * 0.02562 * 17 16 15 19 19 C 1.37875 * 119.99989 * 180.02562 * 17 16 15 20 20 N 1.31518 * 119.99944 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99979 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47454 * 59.99696 * 21 19 17 23 23 H 1.48506 * 109.47297 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.46926 * 299.99488 * 21 19 17 25 25 C 1.46959 * 110.88319 * 59.32174 * 15 14 13 26 26 C 1.46959 * 110.99990 * 123.82556 * 12 11 10 27 27 N 1.36446 * 107.04956 * 0.22812 * 11 10 9 28 28 C 1.46502 * 127.13680 * 179.77165 * 27 11 10 29 29 H 1.08995 * 109.47290 * 59.99830 * 1 2 3 30 30 H 1.08998 * 109.46598 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46943 * 299.99830 * 1 2 3 32 32 H 1.09000 * 109.46943 * 240.00170 * 2 1 3 33 33 H 1.08995 * 109.47290 * 120.00170 * 2 1 3 34 34 H 1.07997 * 119.99584 * 305.00152 * 3 2 1 35 35 H 1.08005 * 119.99951 * 359.97438 * 4 3 2 36 36 H 0.96701 * 114.00037 * 300.00070 * 7 5 4 37 37 H 1.08995 * 109.48972 * 63.22090 * 13 12 11 38 38 H 1.08993 * 109.50763 * 303.16799 * 13 12 11 39 39 H 1.08994 * 109.48935 * 181.63483 * 14 13 12 40 40 H 1.08999 * 109.48934 * 61.56553 * 14 13 12 41 41 H 1.08992 * 109.47459 * 289.99824 * 16 15 14 42 42 H 1.09004 * 109.47040 * 49.99975 * 16 15 14 43 43 H 0.96997 * 119.99752 * 180.02562 * 20 19 17 44 44 H 1.08995 * 109.48972 * 60.64434 * 25 15 14 45 45 H 1.08998 * 109.48999 * 180.71033 * 25 15 14 46 46 H 1.08999 * 109.48803 * 296.77756 * 26 12 11 47 47 H 1.09000 * 109.48812 * 56.82393 * 26 12 11 48 48 H 1.09006 * 109.47251 * 89.99872 * 28 27 11 49 49 H 1.08998 * 109.47677 * 209.99622 * 28 27 11 50 50 H 1.08995 * 109.47089 * 330.00266 * 28 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.8643 1.8214 0.9293 5 6 3.3661 3.2423 0.9296 6 1 2.9316 3.7814 0.0878 7 8 4.7903 3.2445 0.8120 8 6 2.9675 3.9157 2.2175 9 7 3.5079 3.7255 3.3878 10 7 2.9254 4.4602 4.2669 11 6 1.9739 5.1639 3.7000 12 7 1.1311 6.0668 4.3285 13 6 1.4316 6.1561 5.7643 14 6 0.4306 7.1003 6.4344 15 7 0.5087 8.4234 5.7996 16 6 -0.3847 9.3805 6.4658 17 6 -0.1017 10.7703 5.9565 18 1 0.6649 10.9269 5.2120 19 6 -0.8214 11.8419 6.4409 20 7 -1.7552 11.6511 7.3472 21 14 -0.4710 13.5645 5.8091 22 1 -0.7020 13.6106 4.3429 23 1 -1.3740 14.5321 6.4826 24 1 0.9413 13.9204 6.0991 25 6 0.2082 8.3341 4.3638 26 6 1.2092 7.3899 3.6937 27 7 1.9673 4.8346 2.3759 28 6 1.0760 5.3592 1.3384 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.7065 2.1087 -0.7662 35 1 3.1898 1.1336 1.6956 36 1 5.2449 2.7812 1.5288 37 1 2.4421 6.5408 5.9011 38 1 1.3553 5.1664 6.2143 39 1 0.6693 7.1908 7.4941 40 1 -0.5775 6.7015 6.3212 41 1 -1.4212 9.1194 6.2523 42 1 -0.2159 9.3465 7.5422 43 1 -2.2617 12.4050 7.6877 44 1 -0.8023 7.9493 4.2270 45 1 0.2848 9.3239 3.9140 46 1 2.2173 7.7887 3.8070 47 1 0.9708 7.2994 2.6340 48 1 1.5233 6.2461 0.8895 49 1 0.9254 4.6002 0.5707 50 1 0.1161 5.6219 1.7829 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350664406.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:54 Heat of formation + Delta-G solvation = 41.422934 kcal Electronic energy + Delta-G solvation = -29230.909078 eV Core-core repulsion = 25294.377423 eV Total energy + Delta-G solvation = -3936.531655 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -44.14623 -40.40993 -38.80268 -36.95660 -36.27514 -35.98928 -34.58038 -32.47852 -32.10767 -31.11412 -29.59223 -28.54798 -27.18343 -26.75672 -24.79491 -23.81514 -23.59456 -22.49405 -21.84652 -20.94097 -20.75300 -18.79115 -18.47239 -17.96886 -17.62188 -17.28424 -16.72863 -16.60984 -16.02339 -15.96501 -15.77888 -15.71637 -15.33479 -15.00001 -14.83345 -14.61573 -14.31418 -14.11974 -13.90812 -13.65537 -13.44944 -13.18495 -13.09120 -12.90868 -12.78050 -12.65481 -12.56865 -12.38720 -12.34501 -12.24316 -12.22290 -11.90122 -11.71641 -11.65799 -11.38277 -11.33881 -11.16221 -10.88341 -10.60497 -10.21050 -9.39435 -9.10023 -8.20134 -6.30411 0.56164 1.01273 1.24305 1.42407 1.45344 1.53061 1.68242 2.40369 2.52131 3.11364 3.18126 3.19297 3.38842 3.56280 3.62407 3.71065 3.76755 3.94171 3.97948 4.16196 4.20979 4.23766 4.28736 4.30282 4.36155 4.39514 4.44862 4.50294 4.57968 4.64946 4.73426 4.81037 4.86445 4.89849 4.93709 4.98209 5.06984 5.15042 5.18318 5.22553 5.33759 5.39345 5.51091 5.61343 5.63552 5.74820 6.02097 6.05841 6.26510 6.50808 6.54367 6.84541 7.39288 7.61604 8.90672 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.020353 B = 0.002196 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.372718 B =12749.411744 C =12825.786554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.102 4.102 3 C -0.111 4.111 4 C -0.208 4.208 5 C 0.244 3.756 6 H 0.138 0.862 7 O -0.550 6.550 8 C 0.149 3.851 9 N -0.307 5.307 10 N -0.357 5.357 11 C 0.363 3.637 12 N -0.450 5.450 13 C 0.092 3.908 14 C 0.058 3.942 15 N -0.548 5.548 16 C 0.210 3.790 17 C -0.523 4.523 18 H 0.065 0.935 19 C 0.002 3.998 20 N -0.933 5.933 21 Si 0.969 3.031 22 H -0.264 1.264 23 H -0.285 1.285 24 H -0.271 1.271 25 C 0.072 3.928 26 C 0.067 3.933 27 N -0.472 5.472 28 C 0.056 3.944 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.043 0.957 32 H 0.088 0.912 33 H 0.061 0.939 34 H 0.133 0.867 35 H 0.110 0.890 36 H 0.395 0.605 37 H 0.048 0.952 38 H 0.094 0.906 39 H 0.083 0.917 40 H 0.033 0.967 41 H -0.032 1.032 42 H 0.005 0.995 43 H 0.264 0.736 44 H 0.032 0.968 45 H 0.085 0.915 46 H 0.043 0.957 47 H 0.111 0.889 48 H 0.101 0.899 49 H 0.122 0.878 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.166 -20.941 -19.935 29.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.139 4.139 3 C -0.130 4.130 4 C -0.227 4.227 5 C 0.182 3.818 6 H 0.156 0.844 7 O -0.356 6.356 8 C -0.120 4.120 9 N -0.147 5.147 10 N -0.202 5.202 11 C 0.005 3.995 12 N -0.174 5.174 13 C -0.035 4.035 14 C -0.071 4.071 15 N -0.273 5.273 16 C 0.084 3.916 17 C -0.562 4.562 18 H 0.083 0.917 19 C -0.196 4.196 20 N -0.574 5.574 21 Si 0.793 3.207 22 H -0.189 1.189 23 H -0.211 1.211 24 H -0.196 1.196 25 C -0.057 4.057 26 C -0.060 4.060 27 N -0.168 5.168 28 C -0.084 4.084 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.062 0.938 32 H 0.107 0.893 33 H 0.079 0.921 34 H 0.151 0.849 35 H 0.128 0.872 36 H 0.245 0.755 37 H 0.067 0.933 38 H 0.112 0.888 39 H 0.101 0.899 40 H 0.052 0.948 41 H -0.015 1.015 42 H 0.023 0.977 43 H 0.073 0.927 44 H 0.050 0.950 45 H 0.103 0.897 46 H 0.062 0.938 47 H 0.129 0.871 48 H 0.119 0.881 49 H 0.140 0.860 50 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 5.798 -21.023 -19.304 29.124 hybrid contribution -1.051 1.192 0.254 1.610 sum 4.747 -19.831 -19.049 27.905 Atomic orbital electron populations 1.21711 0.94544 1.02330 1.01997 1.20739 0.96531 0.93553 1.03050 1.23180 0.94587 0.98155 0.97030 1.23169 1.02214 0.95997 1.01314 1.19183 0.82202 0.92105 0.88267 0.84416 1.86572 1.16560 1.80102 1.52354 1.26097 0.91075 0.95189 0.99670 1.73724 1.23570 1.19966 0.97448 1.74547 1.07898 1.12398 1.25370 1.22784 0.94127 0.99682 0.82916 1.58916 1.45250 1.08116 1.05155 1.21969 0.98038 1.00183 0.83312 1.22165 0.97378 0.88618 0.98902 1.62226 1.54608 1.07412 1.03099 1.19351 0.88281 0.90647 0.93328 1.21402 1.19071 0.92073 1.23627 0.91704 1.25902 0.94766 1.03688 0.95240 1.70078 1.23928 1.32790 1.30563 0.85446 0.78065 0.78340 0.78819 1.18869 1.21091 1.19633 1.21976 0.96002 0.98958 0.88753 1.22467 0.99362 0.84797 0.99334 1.46174 1.29059 1.33384 1.08175 1.22622 0.93746 1.02346 0.89714 0.91497 0.91862 0.93770 0.89347 0.92058 0.84936 0.87247 0.75473 0.93335 0.88800 0.89893 0.94845 1.01479 0.97652 0.92691 0.94960 0.89682 0.93847 0.87110 0.88088 0.85981 0.88204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.90 71.98 0.71 -0.56 16 2 C -0.10 -0.90 6.38 29.85 0.19 -0.71 16 3 C -0.11 -1.07 9.12 25.65 0.23 -0.84 16 4 C -0.21 -2.80 8.70 25.65 0.22 -2.58 16 5 C 0.24 3.75 3.68 29.10 0.11 3.86 16 6 H 0.14 1.38 6.94 -2.39 -0.02 1.36 16 7 O -0.55 -9.80 13.31 -148.98 -1.98 -11.78 16 8 C 0.15 3.42 6.91 137.64 0.95 4.37 16 9 N -0.31 -9.31 12.10 -49.54 -0.60 -9.91 16 10 N -0.36 -12.09 11.30 -58.01 -0.66 -12.75 16 11 C 0.36 10.65 7.22 260.12 1.88 12.53 16 12 N -0.45 -13.40 4.75 -705.55 -3.35 -16.75 16 13 C 0.09 2.98 4.99 86.31 0.43 3.41 16 14 C 0.06 2.10 5.61 86.31 0.48 2.59 16 15 N -0.55 -23.20 4.70 -900.27 -4.23 -27.43 16 16 C 0.21 10.94 4.72 85.56 0.40 11.34 16 17 C -0.52 -28.78 8.47 25.60 0.22 -28.57 16 18 H 0.06 3.46 7.13 -2.91 -0.02 3.44 16 19 C 0.00 0.13 5.46 84.65 0.46 0.59 16 20 N -0.93 -55.27 13.29 21.45 0.28 -54.98 16 21 Si 0.97 43.21 29.54 68.60 2.03 45.24 16 22 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16 23 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 24 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 25 C 0.07 2.57 5.43 86.31 0.47 3.04 16 26 C 0.07 1.91 5.43 86.31 0.47 2.38 16 27 N -0.47 -10.36 3.21 -538.18 -1.73 -12.09 16 28 C 0.06 0.66 9.11 127.77 1.16 1.83 16 29 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.04 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.06 0.64 7.79 -2.39 -0.02 0.62 16 34 H 0.13 0.72 7.83 -2.91 -0.02 0.70 16 35 H 0.11 1.72 7.84 -2.91 -0.02 1.69 16 36 H 0.39 5.95 8.96 -74.06 -0.66 5.29 16 37 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.09 2.89 8.02 -2.39 -0.02 2.87 16 39 H 0.08 2.97 8.07 -2.39 -0.02 2.95 16 40 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 41 H -0.03 -1.83 8.12 -2.39 -0.02 -1.85 16 42 H 0.01 0.30 8.03 -2.38 -0.02 0.28 16 43 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 44 H 0.03 1.16 8.14 -2.39 -0.02 1.15 16 45 H 0.08 3.22 6.79 -2.39 -0.02 3.21 16 46 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 47 H 0.11 2.35 5.35 -2.39 -0.01 2.34 16 48 H 0.10 0.88 7.80 -2.38 -0.02 0.86 16 49 H 0.12 0.63 7.53 -2.39 -0.02 0.61 16 50 H 0.10 1.23 7.65 -2.39 -0.02 1.21 16 Total: -1.00 -72.70 401.93 -1.58 -74.28 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: 0.27 Total: 13.51 kcal Atomic # 6 Polarization: 4.28 SS G_CDS: 8.39 Total: 12.68 kcal Atomic # 7 Polarization: -123.64 SS G_CDS: -10.28 Total: -133.92 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: -1.98 Total: -11.78 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -72.70 -1.58 -74.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350664406.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.701 kcal (2) G-P(sol) polarization free energy of solvation -72.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds