Wall clock time and date at job start Tue Mar 31 2020 20:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50701 * 109.47380 * 2 1 4 4 C 1.30995 * 119.99795 * 124.99917 * 3 2 1 5 5 C 1.50701 * 119.99795 * 179.97438 * 4 3 2 6 6 H 1.08997 * 109.47242 * 245.00032 * 5 4 3 7 7 O 1.42902 * 109.47210 * 5.00052 * 5 4 3 8 8 C 1.50699 * 109.47318 * 125.00005 * 5 4 3 9 9 N 1.30299 * 126.34873 * 285.15197 * 8 5 4 10 10 N 1.28531 * 110.05684 * 180.30919 * 9 8 5 11 11 C 1.31221 * 109.85344 * 359.72193 * 10 9 8 12 12 N 1.38589 * 126.46743 * 179.97438 * 11 10 9 13 13 C 1.46953 * 110.99737 * 123.82585 * 12 11 10 14 14 C 1.53051 * 109.36397 * 176.81206 * 13 12 11 15 15 N 1.46957 * 109.36432 * 58.40138 * 14 13 12 16 16 C 1.46897 * 110.99677 * 176.81477 * 15 14 13 17 17 C 1.50694 * 109.47775 * 58.97849 * 16 15 14 18 18 H 1.08004 * 119.99409 * 5.00842 * 17 16 15 19 19 C 1.37876 * 120.00461 * 185.00594 * 17 16 15 20 20 N 1.31512 * 119.99605 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99992 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47396 * 0.02562 * 21 19 17 23 23 H 1.48495 * 109.46945 * 120.00316 * 21 19 17 24 24 H 1.48506 * 109.47091 * 240.00327 * 21 19 17 25 25 C 1.46955 * 110.87776 * 300.68150 * 15 14 13 26 26 C 1.46957 * 111.00070 * 0.02744 * 12 11 10 27 27 N 1.36448 * 107.05566 * 359.97438 * 11 10 9 28 28 C 1.46504 * 127.13035 * 180.02562 * 27 11 10 29 29 H 1.08999 * 109.46834 * 300.00200 * 1 2 3 30 30 H 1.09001 * 109.46889 * 59.99798 * 1 2 3 31 31 H 1.08996 * 109.47315 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46834 * 239.99800 * 2 1 3 33 33 H 1.09001 * 109.46889 * 120.00202 * 2 1 3 34 34 H 1.07998 * 119.99708 * 305.00155 * 3 2 1 35 35 H 1.07995 * 120.00240 * 359.97438 * 4 3 2 36 36 H 0.96699 * 113.99822 * 59.99888 * 7 5 4 37 37 H 1.08994 * 109.48967 * 296.77929 * 13 12 11 38 38 H 1.08997 * 109.48984 * 56.84400 * 13 12 11 39 39 H 1.09002 * 109.48434 * 298.43558 * 14 13 12 40 40 H 1.09000 * 109.48717 * 178.36884 * 14 13 12 41 41 H 1.09007 * 109.46882 * 178.97900 * 16 15 14 42 42 H 1.09006 * 109.47059 * 298.97520 * 16 15 14 43 43 H 0.97003 * 119.99772 * 179.97438 * 20 19 17 44 44 H 1.09002 * 109.49220 * 299.35091 * 25 15 14 45 45 H 1.09003 * 109.48460 * 179.29259 * 25 15 14 46 46 H 1.09003 * 109.48630 * 303.15551 * 26 12 11 47 47 H 1.09004 * 109.48680 * 63.19694 * 26 12 11 48 48 H 1.08995 * 109.47273 * 89.99801 * 28 27 11 49 49 H 1.09006 * 109.46755 * 209.99598 * 28 27 11 50 50 H 1.08997 * 109.47422 * 329.99339 * 28 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.8642 1.8213 0.9293 5 6 3.3671 3.2420 0.9290 6 1 4.4424 3.2468 0.7507 7 8 2.7098 3.9797 -0.1034 8 6 3.0764 3.8781 2.2639 9 7 1.9144 4.2883 2.6872 10 7 2.0257 4.7860 3.8670 11 6 3.2740 4.7140 4.2652 12 7 3.7774 5.1502 5.4805 13 6 4.4636 4.0602 6.1879 14 6 5.0721 4.6004 7.4842 15 7 4.0087 5.1783 8.3179 16 6 4.5424 5.6406 9.6060 17 6 5.6114 6.6751 9.3648 18 1 5.8125 7.0198 8.3612 19 6 6.3325 7.1815 10.4253 20 7 6.0878 6.7614 11.6472 21 14 7.6580 8.4633 10.1261 22 1 7.7369 8.7643 8.6741 23 1 7.3240 9.7038 10.8708 24 1 8.9665 7.9411 10.5956 25 6 3.3225 6.2683 7.6103 26 6 2.7140 5.7281 6.3141 27 7 3.9826 4.1287 3.2567 28 6 5.4179 3.8356 3.2388 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.7066 2.1087 -0.7661 35 1 3.1897 1.1335 1.6957 36 1 1.7482 4.0174 -0.0086 37 1 3.7482 3.2721 6.4229 38 1 5.2544 3.6571 5.5553 39 1 5.8073 5.3696 7.2478 40 1 5.5567 3.7875 8.0248 41 1 3.7380 6.0801 10.1959 42 1 4.9696 4.7959 10.1466 43 1 6.5954 7.1174 12.3932 44 1 4.0379 7.0565 7.3754 45 1 2.5317 6.6714 8.2430 46 1 2.2294 6.5410 5.7734 47 1 1.9786 4.9590 6.5502 48 1 5.5900 2.8378 3.6422 49 1 5.7853 3.8814 2.2135 50 1 5.9462 4.5696 3.8472 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350664407.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:00 Heat of formation + Delta-G solvation = 64.198987 kcal Electronic energy + Delta-G solvation = -29384.201142 eV Core-core repulsion = 25448.657130 eV Total energy + Delta-G solvation = -3935.544011 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.07264 -39.06085 -38.31244 -35.57089 -35.34356 -34.94551 -32.52770 -31.58535 -30.64891 -29.96098 -28.24805 -27.37839 -26.50745 -25.04384 -23.57107 -22.91785 -22.17854 -21.19090 -20.92015 -19.92447 -19.31391 -17.91685 -17.17311 -16.58160 -16.46506 -16.17264 -15.89816 -15.31449 -14.96411 -14.57158 -14.53642 -14.39121 -14.19934 -14.03274 -13.60169 -13.43301 -13.29532 -13.11785 -12.88048 -12.46936 -12.24532 -12.05314 -12.02862 -11.67724 -11.57938 -11.37077 -11.22695 -11.00770 -10.96347 -10.82429 -10.76194 -10.59608 -10.50936 -10.31403 -10.18670 -9.94617 -9.80268 -9.64962 -9.48701 -8.50306 -8.16463 -7.31777 -6.09795 -4.19063 1.57278 1.78395 2.16131 2.78488 3.21770 3.30622 3.33743 3.67730 3.90112 4.04132 4.29094 4.34921 4.42069 4.58047 4.67000 4.79576 4.81902 4.91607 4.93958 4.96988 5.06073 5.08846 5.19737 5.20967 5.36124 5.38932 5.54991 5.56987 5.61924 5.63198 5.65283 5.80089 5.85428 5.86810 5.97451 6.12926 6.21261 6.30310 6.42414 6.46298 6.58545 6.69937 6.81401 7.13766 7.16698 7.20291 7.44734 7.81951 7.91219 8.13114 8.20221 8.72598 8.90994 9.48317 10.95504 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.024062 B = 0.002252 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.366630 B =12428.274329 C =12713.874034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.097 4.097 3 C -0.128 4.128 4 C -0.196 4.196 5 C 0.240 3.760 6 H 0.119 0.881 7 O -0.542 6.542 8 C 0.131 3.869 9 N -0.270 5.270 10 N -0.324 5.324 11 C 0.379 3.621 12 N -0.450 5.450 13 C 0.055 3.945 14 C 0.066 3.934 15 N -0.543 5.543 16 C 0.187 3.813 17 C -0.551 4.551 18 H 0.059 0.941 19 C 0.065 3.935 20 N -0.889 5.889 21 Si 0.889 3.111 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.284 1.284 25 C 0.061 3.939 26 C 0.077 3.923 27 N -0.480 5.480 28 C 0.071 3.929 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.120 0.880 35 H 0.117 0.883 36 H 0.389 0.611 37 H 0.051 0.949 38 H 0.074 0.926 39 H 0.054 0.946 40 H 0.078 0.922 41 H 0.030 0.970 42 H 0.036 0.964 43 H 0.262 0.738 44 H 0.051 0.949 45 H 0.080 0.920 46 H 0.085 0.915 47 H 0.057 0.943 48 H 0.082 0.918 49 H 0.090 0.910 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.183 -12.303 -22.495 25.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.134 4.134 3 C -0.146 4.146 4 C -0.215 4.215 5 C 0.177 3.823 6 H 0.137 0.863 7 O -0.348 6.348 8 C -0.137 4.137 9 N -0.111 5.111 10 N -0.169 5.169 11 C 0.023 3.977 12 N -0.174 5.174 13 C -0.072 4.072 14 C -0.063 4.063 15 N -0.268 5.268 16 C 0.062 3.938 17 C -0.590 4.590 18 H 0.077 0.923 19 C -0.138 4.138 20 N -0.528 5.528 21 Si 0.717 3.283 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.210 1.210 25 C -0.068 4.068 26 C -0.050 4.050 27 N -0.176 5.176 28 C -0.072 4.072 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.138 0.862 35 H 0.135 0.865 36 H 0.238 0.762 37 H 0.069 0.931 38 H 0.092 0.908 39 H 0.073 0.927 40 H 0.096 0.904 41 H 0.048 0.952 42 H 0.054 0.946 43 H 0.072 0.928 44 H 0.069 0.931 45 H 0.098 0.902 46 H 0.103 0.897 47 H 0.075 0.925 48 H 0.100 0.900 49 H 0.109 0.891 50 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -4.986 -11.901 -22.451 25.895 hybrid contribution 1.958 0.609 0.346 2.080 sum -3.028 -11.292 -22.105 25.006 Atomic orbital electron populations 1.21717 0.94770 1.01813 1.02381 1.20667 0.96484 0.93874 1.02395 1.22892 0.95901 0.97548 0.98281 1.23218 1.01417 0.96357 1.00544 1.18786 0.97766 0.86814 0.78888 0.86343 1.86563 1.25856 1.75378 1.46956 1.25277 0.86770 1.06709 0.94972 1.73800 1.19476 1.12438 1.05344 1.74665 1.12383 1.23225 1.06632 1.22956 0.87503 0.96066 0.91225 1.58916 1.28563 1.29598 1.00294 1.22568 0.97623 0.91096 0.95887 1.21932 0.94042 0.99673 0.90652 1.62737 1.27334 1.31076 1.05635 1.19757 0.94155 0.95125 0.84799 1.21765 1.19649 1.23944 0.93607 0.92289 1.24965 0.97141 0.96573 0.95102 1.69951 1.41014 1.43125 0.98698 0.86586 0.81764 0.81622 0.78327 1.19842 1.20915 1.20963 1.22043 0.98664 0.93973 0.92150 1.22268 0.90545 0.99412 0.92744 1.45962 1.10177 1.48019 1.13466 1.22205 0.76785 1.03350 1.04889 0.92316 0.92435 0.92506 0.90866 0.91617 0.86192 0.86543 0.76159 0.93109 0.90812 0.92743 0.90375 0.95168 0.94583 0.92803 0.93104 0.90181 0.89662 0.92477 0.89994 0.89146 0.88206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.90 37.16 0.37 -0.55 16 2 C -0.10 -0.60 6.38 -27.88 -0.18 -0.78 16 3 C -0.13 -0.92 8.72 -36.02 -0.31 -1.24 16 4 C -0.20 -1.57 9.10 -36.02 -0.33 -1.90 16 5 C 0.24 2.17 3.93 -29.04 -0.11 2.05 16 6 H 0.12 0.84 6.95 -51.93 -0.36 0.48 16 7 O -0.54 -5.21 12.17 -35.23 -0.43 -5.64 16 8 C 0.13 1.64 6.91 -154.02 -1.06 0.57 16 9 N -0.27 -4.23 12.10 32.99 0.40 -3.83 16 10 N -0.32 -5.60 11.30 30.32 0.34 -5.26 16 11 C 0.38 5.89 7.22 -318.86 -2.30 3.59 16 12 N -0.45 -7.13 4.76 -174.36 -0.83 -7.96 16 13 C 0.06 0.81 5.42 -3.77 -0.02 0.79 16 14 C 0.07 1.18 5.24 -3.77 -0.02 1.16 16 15 N -0.54 -11.07 4.92 -235.91 -1.16 -12.23 16 16 C 0.19 4.60 5.14 -4.98 -0.03 4.57 16 17 C -0.55 -14.48 7.66 -34.44 -0.26 -14.74 16 18 H 0.06 1.55 5.82 -52.48 -0.31 1.24 16 19 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 20 N -0.89 -25.45 13.29 55.43 0.74 -24.71 16 21 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 22 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 C 0.06 1.14 5.32 -3.77 -0.02 1.12 16 26 C 0.08 1.28 4.99 -3.77 -0.02 1.26 16 27 N -0.48 -5.93 3.21 -121.46 -0.39 -6.32 16 28 C 0.07 0.56 9.28 59.85 0.56 1.12 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.42 7.79 -51.93 -0.40 0.01 16 34 H 0.12 0.81 6.56 -52.49 -0.34 0.46 16 35 H 0.12 0.91 7.84 -52.49 -0.41 0.50 16 36 H 0.39 3.17 8.21 45.56 0.37 3.55 16 37 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.07 0.88 5.32 -51.93 -0.28 0.60 16 39 H 0.05 1.07 6.62 -51.93 -0.34 0.73 16 40 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 41 H 0.03 0.80 8.12 -51.93 -0.42 0.37 16 42 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 44 H 0.05 1.05 6.78 -51.93 -0.35 0.70 16 45 H 0.08 1.48 8.12 -51.93 -0.42 1.06 16 46 H 0.09 1.39 8.02 -51.93 -0.42 0.98 16 47 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 48 H 0.08 0.51 7.79 -51.93 -0.40 0.10 16 49 H 0.09 0.49 7.09 -51.93 -0.37 0.12 16 50 H 0.10 0.86 7.63 -51.93 -0.40 0.46 16 LS Contribution 395.34 15.07 5.96 5.96 Total: -1.00 -31.94 395.34 -11.61 -43.55 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -7.37 Total: 1.85 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: -3.84 Total: -1.29 kcal Atomic # 7 Polarization: -59.40 SS G_CDS: -0.90 Total: -60.30 kcal Atomic # 8 Polarization: -5.21 SS G_CDS: -0.43 Total: -5.64 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.94 -11.61 -43.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350664407.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.749 kcal (2) G-P(sol) polarization free energy of solvation -31.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds