Wall clock time and date at job start Tue Mar 31 2020 19:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21286 * 120.00261 * 2 1 4 4 N 1.34780 * 120.00135 * 179.97438 * 2 1 3 5 5 C 1.46503 * 120.00137 * 180.02562 * 4 2 1 6 6 C 1.52998 * 109.47128 * 180.02562 * 5 4 2 7 7 C 1.52995 * 109.46974 * 180.02562 * 6 5 4 8 8 N 1.46504 * 109.47037 * 179.45824 * 7 6 5 9 9 C 1.36742 * 127.13193 * 268.86631 * 8 7 6 10 10 C 1.50699 * 126.34976 * 359.95236 * 9 8 7 11 11 N 1.30293 * 107.30233 * 180.22871 * 9 8 7 12 12 N 1.28535 * 110.05493 * 359.76433 * 11 9 8 13 13 C 1.31217 * 109.85666 * 0.02562 * 12 11 9 14 14 N 1.38586 * 126.47016 * 179.97438 * 13 12 11 15 15 C 1.46847 * 111.00180 * 61.64290 * 14 13 12 16 16 C 1.53031 * 109.52180 * 174.16005 * 15 14 13 17 17 C 1.53115 * 109.27761 * 59.18252 * 16 15 14 18 18 C 1.50706 * 109.52073 * 182.44147 * 17 16 15 19 19 H 1.07998 * 120.00204 * 119.68562 * 18 17 16 20 20 C 1.37881 * 119.99607 * 299.67645 * 18 17 16 21 21 N 1.31516 * 120.00075 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99753 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47420 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.47261 * 120.00279 * 22 20 18 25 25 H 1.48500 * 109.46891 * 240.00179 * 22 20 18 26 26 C 1.53114 * 109.16200 * 302.33987 * 17 16 15 27 27 C 1.46842 * 110.99552 * 297.43304 * 14 13 12 28 28 H 1.09002 * 109.47209 * 239.99759 * 1 2 3 29 29 H 1.09001 * 109.46909 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.47336 * 119.99842 * 1 2 3 31 31 H 0.97003 * 119.99897 * 0.02562 * 4 2 1 32 32 H 1.09002 * 109.46761 * 59.99894 * 5 4 2 33 33 H 1.09002 * 109.47093 * 300.00275 * 5 4 2 34 34 H 1.09002 * 109.46990 * 59.99676 * 6 5 4 35 35 H 1.09006 * 109.46687 * 299.99897 * 6 5 4 36 36 H 1.09000 * 109.47521 * 59.45637 * 7 6 5 37 37 H 1.09000 * 109.47130 * 299.45377 * 7 6 5 38 38 H 1.09000 * 109.47396 * 270.29027 * 10 9 8 39 39 H 1.08998 * 109.46930 * 30.29779 * 10 9 8 40 40 H 1.09003 * 109.46960 * 150.29370 * 10 9 8 41 41 H 1.08999 * 109.45915 * 294.18038 * 15 14 13 42 42 H 1.09007 * 109.45968 * 54.14139 * 15 14 13 43 43 H 1.08998 * 109.50284 * 299.23331 * 16 15 14 44 44 H 1.09008 * 109.50169 * 179.12091 * 16 15 14 45 45 H 1.08995 * 109.52540 * 62.24960 * 17 16 15 46 46 H 0.97002 * 119.99753 * 179.97438 * 21 20 18 47 47 H 1.08999 * 109.50654 * 297.71807 * 26 17 16 48 48 H 1.08995 * 109.50660 * 177.59669 * 26 17 16 49 49 H 1.08997 * 109.46409 * 305.85249 * 27 14 13 50 50 H 1.08997 * 109.46866 * 65.82805 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1672 0.0011 6 6 4.1559 -2.6097 0.0010 7 6 5.6859 -2.6097 0.0022 8 7 6.1742 -3.9909 0.0151 9 6 6.4688 -4.7520 1.1123 10 6 6.3527 -4.3250 2.5529 11 7 6.8742 -5.9128 0.6812 12 7 6.8512 -5.9383 -0.6037 13 6 6.4269 -4.7854 -1.0649 14 7 6.2700 -4.4387 -2.3975 15 6 5.2822 -5.3047 -3.0538 16 6 5.0280 -4.8031 -4.4771 17 6 6.3440 -4.8142 -5.2596 18 6 6.1117 -4.2648 -6.6436 19 1 6.6424 -3.3830 -6.9707 20 6 5.2215 -4.8882 -7.4922 21 7 4.5749 -5.9619 -7.0937 22 14 4.9340 -4.2077 -9.2079 23 1 5.7775 -3.0024 -9.4102 24 1 5.2934 -5.2375 -10.2156 25 1 3.5029 -3.8425 -9.3621 26 6 7.3703 -3.9437 -4.5293 27 6 7.5567 -4.4701 -3.1044 28 1 -0.3634 -0.5139 0.8900 29 1 -0.3633 1.0277 -0.0005 30 1 -0.3634 -0.5138 -0.8900 31 1 1.6959 -2.0073 0.0005 32 1 4.0088 -0.6531 0.8911 33 1 4.0096 -0.6535 -0.8889 34 1 3.7929 -3.1233 -0.8893 35 1 3.7922 -3.1237 0.8908 36 1 6.0485 -2.0877 0.8877 37 1 6.0499 -2.1040 -0.8922 38 1 7.2919 -3.8758 2.8756 39 1 5.5483 -3.5963 2.6521 40 1 6.1339 -5.1944 3.1730 41 1 5.6621 -6.3256 -3.0909 42 1 4.3498 -5.2845 -2.4896 43 1 4.6350 -3.7871 -4.4401 44 1 4.3064 -5.4553 -4.9693 45 1 6.7173 -5.8358 -5.3302 46 1 3.9484 -6.4002 -7.6906 47 1 7.0143 -2.9141 -4.4932 48 1 8.3223 -3.9817 -5.0587 49 1 8.2762 -3.8438 -2.5770 50 1 7.9259 -5.4950 -3.1413 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001359454201.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:50 Heat of formation + Delta-G solvation = 31.732492 kcal Electronic energy + Delta-G solvation = -29640.256605 eV Core-core repulsion = 25703.304741 eV Total energy + Delta-G solvation = -3936.951864 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.89167 -39.84754 -38.35174 -36.69994 -34.78506 -34.17010 -32.21208 -31.87564 -30.79203 -29.99489 -29.74687 -27.27656 -26.05015 -25.57613 -22.80522 -22.45826 -22.22950 -21.11165 -20.94124 -20.38031 -18.60017 -17.38613 -17.13461 -16.59091 -16.29507 -16.17701 -16.05194 -15.71807 -15.10835 -14.56456 -14.26720 -14.22861 -13.80851 -13.48735 -13.43058 -13.16143 -13.06485 -12.92286 -12.81889 -12.73321 -12.54683 -12.39014 -12.35663 -12.14635 -11.65186 -11.40712 -11.36379 -11.07456 -10.93871 -10.57977 -10.41612 -10.35280 -10.31057 -10.17334 -10.02582 -9.58688 -9.43036 -9.12335 -8.85523 -8.75565 -8.35401 -8.33764 -6.02104 -4.07562 1.76215 2.23930 2.34997 2.90956 2.94140 3.27823 3.36490 3.40182 3.98507 4.26321 4.30745 4.41825 4.43064 4.55695 4.65306 4.72978 4.90413 4.95005 5.02100 5.07137 5.20250 5.27594 5.28695 5.30297 5.44147 5.50765 5.54415 5.62195 5.70571 5.74244 5.87112 5.94776 6.05498 6.09461 6.14839 6.16798 6.38537 6.48705 6.66316 6.73720 6.89259 7.02313 7.14783 7.30983 7.34730 7.61268 7.72073 7.90278 7.95448 8.05923 8.41058 8.85933 8.96219 9.57448 11.04278 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.007664 B = 0.003652 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3652.560630 B = 7664.451716 C =10577.746018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.510 3.490 3 O -0.547 6.547 4 N -0.731 5.731 5 C 0.123 3.877 6 C -0.146 4.146 7 C 0.119 3.881 8 N -0.468 5.468 9 C 0.164 3.836 10 C -0.061 4.061 11 N -0.290 5.290 12 N -0.314 5.314 13 C 0.364 3.636 14 N -0.465 5.465 15 C 0.072 3.928 16 C -0.102 4.102 17 C 0.046 3.954 18 C -0.510 4.510 19 H 0.056 0.944 20 C 0.061 3.939 21 N -0.891 5.891 22 Si 0.889 3.111 23 H -0.274 1.274 24 H -0.285 1.285 25 H -0.285 1.285 26 C -0.105 4.105 27 C 0.072 3.928 28 H 0.087 0.913 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.403 0.597 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.073 0.927 36 H 0.094 0.906 37 H 0.107 0.893 38 H 0.083 0.917 39 H 0.074 0.926 40 H 0.093 0.907 41 H 0.044 0.956 42 H 0.053 0.947 43 H 0.044 0.956 44 H 0.099 0.901 45 H 0.026 0.974 46 H 0.259 0.741 47 H 0.058 0.942 48 H 0.058 0.942 49 H 0.057 0.943 50 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.923 7.952 19.443 21.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.298 3.702 3 O -0.424 6.424 4 N -0.384 5.384 5 C -0.001 4.001 6 C -0.185 4.185 7 C -0.005 4.005 8 N -0.162 5.162 9 C -0.103 4.103 10 C -0.120 4.120 11 N -0.131 5.131 12 N -0.157 5.157 13 C 0.008 3.992 14 N -0.192 5.192 15 C -0.055 4.055 16 C -0.141 4.141 17 C 0.028 3.972 18 C -0.549 4.549 19 H 0.074 0.926 20 C -0.139 4.139 21 N -0.530 5.530 22 Si 0.718 3.282 23 H -0.198 1.198 24 H -0.211 1.211 25 H -0.211 1.211 26 C -0.143 4.143 27 C -0.055 4.055 28 H 0.106 0.894 29 H 0.111 0.889 30 H 0.109 0.891 31 H 0.237 0.763 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.104 0.896 35 H 0.092 0.908 36 H 0.112 0.888 37 H 0.126 0.874 38 H 0.101 0.899 39 H 0.093 0.907 40 H 0.112 0.888 41 H 0.063 0.937 42 H 0.072 0.928 43 H 0.063 0.937 44 H 0.118 0.882 45 H 0.044 0.956 46 H 0.069 0.931 47 H 0.077 0.923 48 H 0.077 0.923 49 H 0.076 0.924 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.269 7.656 19.353 21.245 hybrid contribution -0.700 0.418 -0.999 1.289 sum -4.968 8.074 18.354 20.658 Atomic orbital electron populations 1.21925 0.91492 1.05648 1.04400 1.20834 0.90716 0.83317 0.75375 1.90738 1.70934 1.31421 1.49350 1.46011 1.07296 1.09043 1.76053 1.21189 0.80020 0.95883 1.03001 1.22120 0.94981 0.97064 1.04332 1.21655 0.94094 0.79376 1.05408 1.46369 1.50057 1.13475 1.06272 1.24765 1.04113 0.89770 0.91658 1.20151 1.03115 1.02784 0.85991 1.74005 1.18278 1.16983 1.03861 1.74700 1.19986 1.18210 1.02795 1.22760 1.00160 0.86900 0.89417 1.58985 1.12096 1.53687 0.94474 1.22374 0.91818 0.94046 0.97217 1.21732 1.02332 1.00676 0.89320 1.18710 0.90294 0.95015 0.93182 1.21207 1.23762 1.12036 0.97862 0.92596 1.24964 0.95888 0.94843 0.98253 1.69872 1.27658 1.19487 1.35978 0.86578 0.77907 0.79020 0.84741 1.19819 1.21093 1.21106 1.21727 1.00633 1.00574 0.91362 1.22210 0.86987 1.00440 0.95822 0.89418 0.88907 0.89143 0.76283 0.91209 0.90600 0.89552 0.90803 0.88786 0.87430 0.89888 0.90706 0.88843 0.93722 0.92825 0.93676 0.88249 0.95606 0.93066 0.92324 0.92318 0.92447 0.93562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.99 10.32 36.00 0.37 -0.62 16 2 C 0.51 4.89 7.94 -10.99 -0.09 4.80 16 3 O -0.55 -7.79 17.09 5.55 0.09 -7.70 16 4 N -0.73 -5.61 5.56 -60.29 -0.33 -5.95 16 5 C 0.12 0.99 5.67 -4.04 -0.02 0.97 16 6 C -0.15 -1.15 5.65 -26.73 -0.15 -1.30 16 7 C 0.12 1.07 5.90 -4.04 -0.02 1.04 16 8 N -0.47 -6.04 2.81 -114.08 -0.32 -6.36 16 9 C 0.16 2.11 8.07 -154.01 -1.24 0.87 16 10 C -0.06 -0.45 10.07 36.01 0.36 -0.09 16 11 N -0.29 -4.95 12.18 32.99 0.40 -4.55 16 12 N -0.31 -5.97 12.19 30.31 0.37 -5.60 16 13 C 0.36 6.10 6.41 -318.88 -2.04 4.06 16 14 N -0.47 -8.14 4.67 -174.55 -0.82 -8.96 16 15 C 0.07 1.38 5.38 -3.84 -0.02 1.36 16 16 C -0.10 -2.27 5.12 -26.66 -0.14 -2.41 16 17 C 0.05 1.11 2.16 -91.65 -0.20 0.91 16 18 C -0.51 -13.49 8.56 -34.44 -0.29 -13.79 16 19 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 20 C 0.06 1.65 5.31 -17.82 -0.09 1.56 16 21 N -0.89 -24.66 11.37 55.43 0.63 -24.03 16 22 Si 0.89 20.81 29.54 -169.99 -5.02 15.79 16 23 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 26 C -0.10 -2.09 5.32 -26.65 -0.14 -2.23 16 27 C 0.07 1.30 5.38 -3.83 -0.02 1.28 16 28 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.09 0.56 8.12 -51.93 -0.42 0.13 16 30 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.40 2.14 8.47 -40.82 -0.35 1.79 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.09 0.58 7.82 -51.93 -0.41 0.18 16 37 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.38 7.90 -51.93 -0.41 -0.03 16 40 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.05 0.96 8.10 -51.93 -0.42 0.54 16 43 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.10 2.49 6.17 -51.92 -0.32 2.17 16 45 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 47 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 48 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 49 H 0.06 0.94 8.10 -51.93 -0.42 0.52 16 50 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 406.87 15.07 6.13 6.13 Total: -1.00 -34.07 406.87 -11.24 -45.31 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -8.63 Total: -0.50 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: -3.75 Total: -3.58 kcal Atomic # 7 Polarization: -55.38 SS G_CDS: -0.07 Total: -55.45 kcal Atomic # 8 Polarization: -7.79 SS G_CDS: 0.09 Total: -7.70 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -34.07 -11.24 -45.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001359454201.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.039 kcal (2) G-P(sol) polarization free energy of solvation -34.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds