Wall clock time and date at job start Tue Mar 31 2020 19:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30820 * 126.44200 * 2 1 4 4 N 1.28925 * 109.74273 * 180.15996 * 3 2 1 5 5 C 1.29724 * 109.42586 * 0.10690 * 4 3 2 6 6 N 1.34793 * 126.43645 * 180.02562 * 2 1 3 7 7 C 1.46223 * 128.60726 * 359.36464 * 6 2 1 8 8 C 1.53813 * 109.15140 * 161.72823 * 7 6 2 9 9 N 1.47085 * 108.98384 * 45.82604 * 8 7 6 10 10 C 1.34769 * 120.94505 * 116.45942 * 9 8 7 11 11 O 1.21588 * 120.00388 * 4.63810 * 10 9 8 12 12 N 1.34787 * 119.99816 * 184.64016 * 10 9 8 13 13 C 1.46498 * 119.99762 * 174.90599 * 12 10 9 14 14 C 1.53003 * 109.46777 * 179.97438 * 13 12 10 15 15 C 1.53005 * 109.46769 * 59.99955 * 14 13 12 16 16 C 1.52995 * 109.47334 * 300.00225 * 14 13 12 17 17 C 1.52999 * 109.47306 * 179.97438 * 14 13 12 18 18 C 1.50700 * 109.47405 * 180.02562 * 17 14 13 19 19 H 1.07999 * 119.99899 * 0.02562 * 18 17 14 20 20 C 1.37868 * 119.99865 * 180.02562 * 18 17 14 21 21 N 1.31517 * 120.00410 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99867 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47431 * 59.99764 * 22 20 18 24 24 H 1.48498 * 109.47232 * 180.02562 * 22 20 18 25 25 H 1.48507 * 109.47218 * 299.99953 * 22 20 18 26 26 C 1.47521 * 118.10051 * 296.18354 * 9 8 7 27 27 H 1.08996 * 109.95375 * 162.77032 * 26 9 8 28 28 C 1.53002 * 109.95885 * 283.95711 * 26 9 8 29 29 H 1.08995 * 109.47124 * 269.97837 * 1 2 3 30 30 H 1.09000 * 109.46870 * 29.97625 * 1 2 3 31 31 H 1.08999 * 109.47383 * 149.97456 * 1 2 3 32 32 H 1.08997 * 109.51542 * 281.75975 * 7 6 2 33 33 H 1.08997 * 109.51519 * 41.87903 * 7 6 2 34 34 H 1.09002 * 109.64218 * 285.97392 * 8 7 6 35 35 H 1.08996 * 109.63600 * 165.67365 * 8 7 6 36 36 H 0.96994 * 119.99229 * 354.89998 * 12 10 9 37 37 H 1.09001 * 109.47271 * 59.99982 * 13 12 10 38 38 H 1.08997 * 109.47138 * 299.99510 * 13 12 10 39 39 H 1.09001 * 109.47033 * 180.02562 * 15 14 13 40 40 H 1.09003 * 109.47224 * 299.99690 * 15 14 13 41 41 H 1.08997 * 109.47363 * 60.00001 * 15 14 13 42 42 H 1.09001 * 109.47034 * 299.99857 * 16 14 13 43 43 H 1.09003 * 109.47440 * 59.99832 * 16 14 13 44 44 H 1.09001 * 109.47248 * 179.97438 * 16 14 13 45 45 H 1.09005 * 109.46973 * 300.00467 * 17 14 13 46 46 H 1.09001 * 109.46750 * 59.99774 * 17 14 13 47 47 H 0.96999 * 120.00312 * 179.97438 * 21 20 18 48 48 H 1.09000 * 109.46961 * 60.00250 * 28 26 9 49 49 H 1.09002 * 109.47066 * 179.97438 * 28 26 9 50 50 H 1.08995 * 109.46891 * 300.00465 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2841 1.0524 0.0000 4 7 3.5190 0.6819 -0.0034 5 6 3.5807 -0.6138 -0.0080 6 7 2.3076 -1.0844 -0.0005 7 6 1.9303 -2.4971 0.0116 8 6 3.1290 -3.3435 -0.4495 9 7 4.3395 -2.8757 0.2427 10 6 5.0094 -3.6827 1.0890 11 8 4.6651 -4.8408 1.2255 12 7 6.0611 -3.2060 1.7843 13 6 6.7196 -4.0483 2.7858 14 6 7.8746 -3.2737 3.4238 15 6 7.3318 -2.0112 4.0964 16 6 8.8844 -2.8819 2.3433 17 6 8.5620 -4.1531 4.4702 18 6 9.6992 -3.3900 5.0991 19 1 9.9102 -2.3787 4.7842 20 6 10.4701 -3.9828 6.0763 21 7 10.2128 -5.2142 6.4601 22 14 11.8792 -3.0366 6.8564 23 1 11.3516 -1.8119 7.5095 24 1 12.5472 -3.8907 7.8710 25 1 12.8597 -2.6553 5.8081 26 6 4.8028 -1.5001 -0.0207 27 1 5.4980 -1.1863 0.7579 28 6 5.4856 -1.4318 -1.3882 29 1 -0.3633 -0.0004 1.0276 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3634 -0.8897 -0.5142 32 1 1.6430 -2.7886 1.0218 33 1 1.0912 -2.6556 -0.6658 34 1 3.2609 -3.2361 -1.5262 35 1 2.9526 -4.3913 -0.2065 36 1 6.3819 -2.3052 1.6214 37 1 7.1066 -4.9476 2.3065 38 1 6.0001 -4.3277 3.5554 39 1 8.1546 -1.4591 4.5506 40 1 6.8418 -1.3845 3.3512 41 1 6.6124 -2.2902 4.8662 42 1 9.2710 -3.7813 1.8640 43 1 8.3944 -2.2552 1.5981 44 1 9.7070 -2.3297 2.7977 45 1 7.8423 -4.4319 5.2400 46 1 8.9485 -5.0528 3.9913 47 1 10.7554 -5.6314 7.1474 48 1 4.7776 -1.7266 -2.1628 49 1 5.8242 -0.4127 -1.5748 50 1 6.3408 -2.1075 -1.4014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365641611.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:55 Heat of formation + Delta-G solvation = 48.694102 kcal Electronic energy + Delta-G solvation = -30131.340807 eV Core-core repulsion = 26195.124453 eV Total energy + Delta-G solvation = -3936.216354 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.65671 -40.48322 -37.83544 -36.83012 -35.42689 -33.70659 -32.58013 -32.14731 -31.73255 -29.39566 -27.84444 -27.13312 -26.54126 -26.30632 -24.55581 -24.36851 -22.79817 -21.57184 -21.15281 -19.45893 -18.69026 -17.72576 -17.63940 -17.10111 -16.40299 -16.14700 -15.80685 -15.04788 -14.96116 -14.65277 -14.48313 -14.24122 -14.15487 -13.70202 -13.63707 -13.28351 -13.13955 -13.05918 -12.91902 -12.81708 -12.59510 -12.19462 -12.14783 -12.06258 -11.95272 -11.65830 -11.19532 -11.02017 -10.88555 -10.71441 -10.65212 -10.49058 -10.43367 -10.28475 -10.26438 -9.90914 -9.45308 -9.25607 -9.23327 -8.96082 -8.74378 -8.36751 -6.01045 -4.02466 1.43172 1.88865 2.37052 2.53425 3.04324 3.31940 3.37286 3.38767 3.61627 3.69696 3.86548 3.99868 4.30316 4.39902 4.44480 4.53048 4.61505 4.63155 4.97237 5.02730 5.13860 5.15497 5.27866 5.29222 5.34439 5.40614 5.43394 5.55849 5.58803 5.69686 5.70878 5.79732 5.92762 6.13361 6.15613 6.19013 6.35648 6.44565 6.49330 6.60767 6.64859 6.73327 7.03218 7.04769 7.09491 7.61644 7.73649 7.81994 7.97301 8.38430 8.41297 8.48054 9.01985 9.60825 11.10332 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.019545 B = 0.002559 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.283095 B =10937.306224 C =11422.658223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.178 3.822 3 N -0.296 5.296 4 N -0.276 5.276 5 C 0.167 3.833 6 N -0.464 5.464 7 C 0.086 3.914 8 C 0.117 3.883 9 N -0.639 5.639 10 C 0.711 3.289 11 O -0.582 6.582 12 N -0.733 5.733 13 C 0.145 3.855 14 C -0.072 4.072 15 C -0.127 4.127 16 C -0.127 4.127 17 C 0.037 3.963 18 C -0.512 4.512 19 H 0.059 0.941 20 C 0.057 3.943 21 N -0.895 5.895 22 Si 0.889 3.111 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.277 1.277 26 C 0.230 3.770 27 H 0.116 0.884 28 C -0.156 4.156 29 H 0.087 0.913 30 H 0.096 0.904 31 H 0.077 0.923 32 H 0.096 0.904 33 H 0.107 0.893 34 H 0.081 0.919 35 H 0.124 0.876 36 H 0.394 0.606 37 H 0.066 0.934 38 H 0.062 0.938 39 H 0.068 0.932 40 H 0.026 0.974 41 H 0.047 0.953 42 H 0.048 0.952 43 H 0.027 0.973 44 H 0.068 0.932 45 H 0.018 0.982 46 H 0.019 0.981 47 H 0.261 0.739 48 H 0.061 0.939 49 H 0.083 0.917 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.804 6.404 -17.369 26.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.089 4.089 3 N -0.137 5.137 4 N -0.116 5.116 5 C -0.102 4.102 6 N -0.156 5.156 7 C -0.038 4.038 8 C -0.007 4.007 9 N -0.378 5.378 10 C 0.413 3.587 11 O -0.460 6.460 12 N -0.389 5.389 13 C 0.022 3.978 14 C -0.073 4.073 15 C -0.184 4.184 16 C -0.184 4.184 17 C 0.000 4.000 18 C -0.550 4.550 19 H 0.077 0.923 20 C -0.144 4.144 21 N -0.534 5.534 22 Si 0.717 3.283 23 H -0.203 1.203 24 H -0.214 1.214 25 H -0.203 1.203 26 C 0.124 3.876 27 H 0.134 0.866 28 C -0.215 4.215 29 H 0.105 0.895 30 H 0.114 0.886 31 H 0.096 0.904 32 H 0.114 0.886 33 H 0.125 0.875 34 H 0.100 0.900 35 H 0.142 0.858 36 H 0.232 0.768 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.045 0.955 41 H 0.066 0.934 42 H 0.068 0.932 43 H 0.046 0.954 44 H 0.087 0.913 45 H 0.037 0.963 46 H 0.037 0.963 47 H 0.070 0.930 48 H 0.080 0.920 49 H 0.102 0.898 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -18.560 6.800 -17.068 26.116 hybrid contribution 0.460 -0.417 0.508 0.803 sum -18.100 6.383 -16.560 25.349 Atomic orbital electron populations 1.20217 0.83560 1.04509 1.04189 1.24769 0.97161 0.82794 1.04160 1.74517 0.95967 1.23526 1.19732 1.74052 1.12342 1.07366 1.17798 1.24686 0.86899 0.92685 1.05911 1.45902 1.06708 1.08534 1.54416 1.22613 0.99771 0.76649 1.04744 1.21813 0.81722 1.00357 0.96808 1.47534 1.29127 1.13021 1.48146 1.15787 0.80313 0.84224 0.78386 1.90928 1.70078 1.15539 1.69423 1.45582 1.32641 1.18887 1.41770 1.21580 0.94288 0.93045 0.88909 1.20929 0.93108 0.96514 0.96742 1.21765 1.00836 0.96857 0.98951 1.21759 0.99289 1.00574 0.96769 1.19081 0.94917 0.94069 0.91965 1.21134 1.13833 0.99898 1.20142 0.92281 1.25004 0.97615 0.94897 0.96928 1.69951 1.39935 1.12823 1.30698 0.86710 0.82634 0.79826 0.79129 1.20313 1.21409 1.20302 1.19629 0.89261 0.78333 1.00421 0.86622 1.22138 1.00962 1.04150 0.94277 0.89473 0.88561 0.90430 0.88564 0.87533 0.90042 0.85795 0.76834 0.91600 0.91923 0.91281 0.95492 0.93371 0.93245 0.95393 0.91319 0.96337 0.96259 0.92973 0.91965 0.89804 0.90347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.34 10.28 36.01 0.37 0.03 16 2 C 0.18 1.77 8.06 -155.37 -1.25 0.52 16 3 N -0.30 -4.02 12.23 32.71 0.40 -3.62 16 4 N -0.28 -3.87 12.21 32.79 0.40 -3.47 16 5 C 0.17 1.91 7.17 -155.30 -1.11 0.79 16 6 N -0.46 -4.38 3.11 -110.54 -0.34 -4.72 16 7 C 0.09 0.54 6.94 -3.77 -0.03 0.51 16 8 C 0.12 0.88 6.35 -3.30 -0.02 0.86 16 9 N -0.64 -6.68 2.63 -171.22 -0.45 -7.12 16 10 C 0.71 10.02 8.31 -86.92 -0.72 9.30 16 11 O -0.58 -10.16 15.79 5.29 0.08 -10.08 16 12 N -0.73 -10.30 4.86 -65.22 -0.32 -10.62 16 13 C 0.14 2.47 4.57 -4.04 -0.02 2.45 16 14 C -0.07 -1.34 0.54 -154.51 -0.08 -1.42 16 15 C -0.13 -2.21 8.05 37.16 0.30 -1.91 16 16 C -0.13 -2.15 8.05 37.16 0.30 -1.85 16 17 C 0.04 0.89 4.04 -27.88 -0.11 0.78 16 18 C -0.51 -13.41 7.65 -34.44 -0.26 -13.67 16 19 H 0.06 1.49 5.68 -52.49 -0.30 1.19 16 20 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 21 N -0.89 -26.19 13.29 55.43 0.74 -25.46 16 22 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 C 0.23 2.25 3.20 -68.39 -0.22 2.04 16 27 H 0.12 1.15 5.88 -51.93 -0.31 0.85 16 28 C -0.16 -1.24 9.43 37.16 0.35 -0.89 16 29 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.21 7.68 -51.93 -0.40 -0.19 16 32 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.11 0.31 7.76 -51.93 -0.40 -0.09 16 34 H 0.08 0.48 7.51 -51.93 -0.39 0.09 16 35 H 0.12 1.00 7.01 -51.93 -0.36 0.63 16 36 H 0.39 4.88 3.76 -40.82 -0.15 4.73 16 37 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 38 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.07 1.30 6.62 -51.93 -0.34 0.96 16 40 H 0.03 0.39 6.86 -51.93 -0.36 0.03 16 41 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 43 H 0.03 0.38 6.86 -51.93 -0.36 0.03 16 44 H 0.07 1.27 6.62 -51.93 -0.34 0.92 16 45 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 48 H 0.06 0.46 7.52 -51.93 -0.39 0.07 16 49 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 50 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 390.70 15.07 5.89 5.89 Total: -1.00 -34.39 390.70 -9.12 -43.52 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -7.89 Total: 0.60 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: -2.61 Total: -0.99 kcal Atomic # 7 Polarization: -55.44 SS G_CDS: 0.43 Total: -55.01 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.08 Total: -10.08 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.39 -9.12 -43.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365641611.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.212 kcal (2) G-P(sol) polarization free energy of solvation -34.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds