Wall clock time and date at job start Tue Mar 31 2020 19:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30295 * 126.34622 * 2 1 4 4 N 1.28530 * 110.04944 * 180.02562 * 3 2 1 5 5 C 1.31220 * 109.86251 * 0.02562 * 4 3 2 6 6 N 1.38574 * 126.47119 * 179.97438 * 5 4 3 7 7 C 1.46852 * 110.99873 * 60.96966 * 6 5 4 8 8 C 1.53041 * 109.52093 * 174.16157 * 7 6 5 9 9 C 1.53119 * 109.28231 * 59.17573 * 8 7 6 10 10 C 1.50699 * 109.52265 * 182.43925 * 9 8 7 11 11 H 1.08003 * 119.99767 * 119.68582 * 10 9 8 12 12 C 1.37875 * 119.99976 * 299.68460 * 10 9 8 13 13 N 1.31507 * 120.00223 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99726 * 180.02562 * 12 10 9 15 15 H 1.48493 * 109.47539 * 59.99883 * 14 12 10 16 16 H 1.48503 * 109.46955 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.46733 * 299.99607 * 14 12 10 18 18 C 1.53110 * 109.16121 * 302.34722 * 9 8 7 19 19 C 1.46842 * 111.00413 * 296.75854 * 6 5 4 20 20 N 1.36448 * 107.05339 * 0.22683 * 5 4 3 21 21 C 1.46504 * 127.13719 * 179.77549 * 20 5 4 22 22 C 1.52995 * 109.47017 * 88.66422 * 21 20 5 23 23 C 1.50700 * 109.47246 * 179.34481 * 22 21 20 24 24 O 1.21281 * 119.99647 * 0.02562 * 23 22 21 25 25 N 1.34777 * 120.00654 * 180.02562 * 23 22 21 26 26 C 1.46493 * 120.00476 * 180.02562 * 25 23 22 27 27 C 1.46501 * 119.99415 * 0.02562 * 25 23 22 28 28 H 1.08997 * 109.47443 * 89.97447 * 1 2 3 29 29 H 1.09003 * 109.47303 * 209.97173 * 1 2 3 30 30 H 1.08995 * 109.47255 * 329.97026 * 1 2 3 31 31 H 1.08998 * 109.45935 * 294.17042 * 7 6 5 32 32 H 1.08994 * 109.46554 * 54.14299 * 7 6 5 33 33 H 1.09003 * 109.50195 * 299.23303 * 8 7 6 34 34 H 1.08999 * 109.49980 * 179.12143 * 8 7 6 35 35 H 1.09004 * 109.52026 * 62.25369 * 9 8 7 36 36 H 0.97006 * 120.00499 * 180.02562 * 13 12 10 37 37 H 1.09005 * 109.50625 * 297.71072 * 18 9 8 38 38 H 1.09003 * 109.50487 * 177.59604 * 18 9 8 39 39 H 1.09008 * 109.46235 * 305.85720 * 19 6 5 40 40 H 1.08997 * 109.46490 * 65.82231 * 19 6 5 41 41 H 1.08991 * 109.46966 * 208.66466 * 21 20 5 42 42 H 1.08995 * 109.46622 * 328.66805 * 21 20 5 43 43 H 1.09002 * 109.47641 * 299.34568 * 22 21 20 44 44 H 1.09006 * 109.47215 * 59.35069 * 22 21 20 45 45 H 1.09002 * 109.47373 * 59.99789 * 26 25 23 46 46 H 1.08995 * 109.47179 * 180.02562 * 26 25 23 47 47 H 1.09009 * 109.46975 * 299.99902 * 26 25 23 48 48 H 1.09001 * 109.46918 * 90.00146 * 27 25 23 49 49 H 1.08994 * 109.47278 * 209.99814 * 27 25 23 50 50 H 1.09003 * 109.47617 * 330.00519 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2792 1.0495 0.0000 4 7 3.5129 0.6888 -0.0005 5 6 3.5945 -0.6209 -0.0015 6 7 4.7579 -1.3737 -0.0028 7 6 5.5620 -1.1018 1.1956 8 6 6.7612 -2.0518 1.2332 9 6 7.6060 -1.8499 -0.0278 10 6 8.7555 -2.8244 -0.0253 11 1 8.8543 -3.5449 -0.8238 12 6 9.6810 -2.7962 0.9963 13 7 9.5610 -1.9186 1.9683 14 14 11.1062 -4.0038 0.9989 15 1 11.9203 -3.8115 -0.2280 16 1 11.9520 -3.7686 2.1967 17 1 10.5789 -5.3917 1.0308 18 6 6.7327 -2.0918 -1.2619 19 6 5.5343 -1.1406 -1.2272 20 7 2.3174 -1.1014 -0.0067 21 6 1.9009 -2.5059 -0.0141 22 6 1.7848 -3.0110 1.4254 23 6 1.3408 -4.4511 1.4182 24 8 1.1377 -5.0178 0.3653 25 7 1.1693 -5.1094 2.5817 26 6 0.7383 -6.5095 2.5746 27 6 1.4141 -4.4247 3.8535 28 1 -0.3634 0.0005 -1.0276 29 1 -0.3634 -0.8902 0.5134 30 1 -0.3633 0.8897 0.5143 31 1 5.9159 -0.0712 1.1693 32 1 4.9507 -1.2532 2.0852 33 1 6.4080 -3.0823 1.2734 34 1 7.3662 -1.8393 2.1146 35 1 7.9916 -0.8305 -0.0485 36 1 10.2123 -1.8984 2.6869 37 1 6.3790 -3.1229 -1.2610 38 1 7.3174 -1.9079 -2.1632 39 1 4.9027 -1.3202 -2.0974 40 1 5.8883 -0.1098 -1.2421 41 1 0.9343 -2.5956 -0.5097 42 1 2.6404 -3.1013 -0.5495 43 1 2.7542 -2.9322 1.9175 44 1 1.0537 -2.4082 1.9641 45 1 1.4698 -7.1122 2.0364 46 1 0.6546 -6.8690 3.6001 47 1 -0.2309 -6.5888 2.0819 48 1 0.4929 -3.9528 4.1952 49 1 1.7492 -5.1480 4.5969 50 1 2.1822 -3.6639 3.7147 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001381614654.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:39:34 Heat of formation + Delta-G solvation = 48.268418 kcal Electronic energy + Delta-G solvation = -30242.149347 eV Core-core repulsion = 26305.914535 eV Total energy + Delta-G solvation = -3936.234813 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.85894 -40.16788 -38.31713 -36.03275 -35.50254 -34.14348 -32.13608 -31.49541 -30.65527 -29.93230 -28.38324 -27.23678 -26.69499 -25.60970 -24.26157 -22.67014 -22.22406 -20.94516 -20.54129 -19.56758 -18.56747 -17.73648 -16.74677 -16.59994 -16.46268 -16.27828 -15.81488 -15.71473 -14.79933 -14.54555 -14.22246 -14.03852 -13.74265 -13.42107 -13.24110 -13.17378 -13.03850 -12.98314 -12.82740 -12.80405 -12.67027 -12.52166 -12.36075 -12.22652 -11.68210 -11.54960 -11.38412 -11.04126 -10.89122 -10.61508 -10.39105 -10.34629 -10.28750 -10.14542 -9.97920 -9.55336 -9.09110 -9.07333 -8.84429 -8.71989 -8.32790 -8.29637 -5.99907 -4.05361 1.79273 2.23048 2.29739 2.73041 2.97671 3.31601 3.36362 3.39229 3.98076 4.22009 4.37516 4.42921 4.43451 4.50192 4.70138 4.82453 4.91952 4.94929 5.02384 5.18388 5.25064 5.26101 5.30201 5.33009 5.38355 5.45695 5.47720 5.61202 5.65100 5.74919 5.91354 5.98497 6.04758 6.13869 6.18400 6.20248 6.40777 6.52231 6.70017 6.77335 6.92166 6.92957 7.05617 7.34329 7.37292 7.64692 7.74099 7.79604 7.98139 8.08010 8.43494 8.89583 8.97863 9.59301 11.06435 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.009458 B = 0.003746 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2959.900407 B = 7473.158734 C = 9529.053726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.164 3.836 3 N -0.290 5.290 4 N -0.313 5.313 5 C 0.363 3.637 6 N -0.466 5.466 7 C 0.071 3.929 8 C -0.103 4.103 9 C 0.047 3.953 10 C -0.512 4.512 11 H 0.055 0.945 12 C 0.062 3.938 13 N -0.891 5.891 14 Si 0.890 3.110 15 H -0.278 1.278 16 H -0.288 1.288 17 H -0.278 1.278 18 C -0.105 4.105 19 C 0.072 3.928 20 N -0.469 5.469 21 C 0.132 3.868 22 C -0.155 4.155 23 C 0.523 3.477 24 O -0.536 6.536 25 N -0.622 5.622 26 C 0.089 3.911 27 C 0.074 3.926 28 H 0.083 0.917 29 H 0.073 0.927 30 H 0.093 0.907 31 H 0.045 0.955 32 H 0.053 0.947 33 H 0.044 0.956 34 H 0.100 0.900 35 H 0.026 0.974 36 H 0.260 0.740 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.057 0.943 40 H 0.046 0.954 41 H 0.099 0.901 42 H 0.112 0.888 43 H 0.109 0.891 44 H 0.097 0.903 45 H 0.063 0.937 46 H 0.075 0.925 47 H 0.061 0.939 48 H 0.058 0.942 49 H 0.076 0.924 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.450 -4.071 3.477 22.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.103 4.103 3 N -0.131 5.131 4 N -0.156 5.156 5 C 0.007 3.993 6 N -0.193 5.193 7 C -0.055 4.055 8 C -0.141 4.141 9 C 0.029 3.971 10 C -0.550 4.550 11 H 0.073 0.927 12 C -0.139 4.139 13 N -0.530 5.530 14 Si 0.718 3.282 15 H -0.203 1.203 16 H -0.214 1.214 17 H -0.204 1.204 18 C -0.143 4.143 19 C -0.054 4.054 20 N -0.163 5.163 21 C 0.008 3.992 22 C -0.195 4.195 23 C 0.310 3.690 24 O -0.412 6.412 25 N -0.356 5.356 26 C -0.053 4.053 27 C -0.069 4.069 28 H 0.102 0.898 29 H 0.092 0.908 30 H 0.112 0.888 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.063 0.937 34 H 0.118 0.882 35 H 0.044 0.956 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.065 0.935 41 H 0.117 0.883 42 H 0.130 0.870 43 H 0.127 0.873 44 H 0.115 0.885 45 H 0.082 0.918 46 H 0.094 0.906 47 H 0.079 0.921 48 H 0.077 0.923 49 H 0.095 0.905 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -21.154 -3.382 3.098 21.646 hybrid contribution 0.659 -1.311 0.297 1.497 sum -20.496 -4.694 3.394 21.298 Atomic orbital electron populations 1.20153 0.83975 1.04098 1.03841 1.24769 0.96507 0.82729 1.06282 1.74004 0.96684 1.24149 1.18235 1.74695 1.11752 1.08695 1.20490 1.22757 0.86064 0.88451 1.01995 1.58970 1.02712 1.51479 1.06166 1.22374 0.94838 1.00452 0.87809 1.21739 0.92496 0.96043 1.03827 1.18700 0.92105 0.97319 0.89011 1.21137 1.08562 1.17309 1.07962 0.92709 1.24952 0.97728 0.95582 0.95618 1.69848 1.36107 1.35315 1.11762 0.86696 0.82492 0.81652 0.77370 1.20321 1.21367 1.20361 1.21729 0.93961 0.97860 1.00790 1.22208 0.94966 0.99920 0.88335 1.46428 1.06412 1.08109 1.55334 1.21477 1.03453 0.77784 0.96489 1.21997 1.04820 0.93631 0.99085 1.20308 0.77037 0.88301 0.83321 1.90732 1.50721 1.69299 1.30491 1.47737 1.68301 1.13078 1.06511 1.21642 1.00419 0.80873 1.02375 1.21925 1.01566 0.98397 0.85001 0.89827 0.90795 0.88796 0.93645 0.92848 0.93714 0.88235 0.95580 0.92967 0.92308 0.92310 0.92399 0.93549 0.88310 0.87012 0.87302 0.88481 0.91813 0.90607 0.92076 0.92327 0.90542 0.90518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.50 10.07 36.01 0.36 -0.13 16 2 C 0.16 2.22 8.07 -154.01 -1.24 0.98 16 3 N -0.29 -5.05 12.18 32.99 0.40 -4.65 16 4 N -0.31 -6.06 12.19 30.31 0.37 -5.69 16 5 C 0.36 6.33 6.41 -318.89 -2.05 4.29 16 6 N -0.47 -8.47 4.67 -174.55 -0.82 -9.29 16 7 C 0.07 1.40 5.37 -3.83 -0.02 1.38 16 8 C -0.10 -2.31 5.12 -26.65 -0.14 -2.45 16 9 C 0.05 1.14 2.16 -91.65 -0.20 0.94 16 10 C -0.51 -13.67 8.56 -34.44 -0.29 -13.96 16 11 H 0.05 1.45 7.74 -52.48 -0.41 1.04 16 12 C 0.06 1.68 5.31 -17.82 -0.09 1.59 16 13 N -0.89 -24.79 11.37 55.43 0.63 -24.16 16 14 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 15 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 16 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 18 C -0.11 -2.16 5.32 -26.65 -0.14 -2.30 16 19 C 0.07 1.35 5.39 -3.84 -0.02 1.33 16 20 N -0.47 -6.55 2.81 -114.09 -0.32 -6.87 16 21 C 0.13 1.51 5.20 -4.04 -0.02 1.49 16 22 C -0.15 -1.51 4.58 -27.89 -0.13 -1.64 16 23 C 0.52 5.75 7.67 -10.99 -0.08 5.67 16 24 O -0.54 -7.66 15.98 5.56 0.09 -7.57 16 25 N -0.62 -5.44 3.27 -189.52 -0.62 -6.06 16 26 C 0.09 0.66 10.16 59.84 0.61 1.27 16 27 C 0.07 0.43 10.21 59.85 0.61 1.05 16 28 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.44 7.90 -51.93 -0.41 0.03 16 30 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.05 0.96 8.10 -51.93 -0.42 0.54 16 33 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.10 2.50 6.18 -51.93 -0.32 2.18 16 35 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 37 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 38 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.06 1.00 8.10 -51.92 -0.42 0.58 16 40 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.10 0.96 7.76 -51.93 -0.40 0.56 16 42 H 0.11 1.49 8.11 -51.93 -0.42 1.07 16 43 H 0.11 1.17 7.40 -51.93 -0.38 0.79 16 44 H 0.10 0.74 8.11 -51.93 -0.42 0.32 16 45 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 46 H 0.08 0.36 7.79 -51.93 -0.40 -0.05 16 47 H 0.06 0.46 8.14 -51.92 -0.42 0.03 16 48 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 49 H 0.08 0.35 7.92 -51.93 -0.41 -0.06 16 50 H 0.08 0.47 6.44 -51.93 -0.33 0.14 16 LS Contribution 402.37 15.07 6.06 6.06 Total: -1.00 -33.12 402.37 -10.61 -43.73 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -8.54 Total: -0.91 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: -2.85 Total: -0.51 kcal Atomic # 7 Polarization: -56.36 SS G_CDS: -0.35 Total: -56.71 kcal Atomic # 8 Polarization: -7.66 SS G_CDS: 0.09 Total: -7.57 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.12 -10.61 -43.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001381614654.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.998 kcal (2) G-P(sol) polarization free energy of solvation -33.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds