Wall clock time and date at job start Tue Mar 31 2020 19:39:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30295 * 126.34622 * 2 1 4 4 N 1.28530 * 110.04944 * 180.02562 * 3 2 1 5 5 C 1.31220 * 109.86251 * 0.02562 * 4 3 2 6 6 N 1.38574 * 126.47119 * 179.97438 * 5 4 3 7 7 C 1.46852 * 110.99873 * 60.96966 * 6 5 4 8 8 C 1.53041 * 109.52093 * 174.16157 * 7 6 5 9 9 C 1.53119 * 109.28231 * 59.17573 * 8 7 6 10 10 C 1.50699 * 109.52265 * 182.43925 * 9 8 7 11 11 H 1.08003 * 119.99767 * 119.68582 * 10 9 8 12 12 C 1.37875 * 119.99976 * 299.68460 * 10 9 8 13 13 N 1.31507 * 120.00223 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99726 * 180.02562 * 12 10 9 15 15 H 1.48493 * 109.47539 * 59.99883 * 14 12 10 16 16 H 1.48503 * 109.46955 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.46733 * 299.99607 * 14 12 10 18 18 C 1.53110 * 109.16121 * 302.34722 * 9 8 7 19 19 C 1.46842 * 111.00413 * 296.75854 * 6 5 4 20 20 N 1.36448 * 107.05339 * 0.22683 * 5 4 3 21 21 C 1.46504 * 127.13719 * 179.77549 * 20 5 4 22 22 C 1.52995 * 109.47017 * 88.66422 * 21 20 5 23 23 C 1.50700 * 109.47246 * 179.34481 * 22 21 20 24 24 O 1.21281 * 119.99647 * 0.02562 * 23 22 21 25 25 N 1.34777 * 120.00654 * 180.02562 * 23 22 21 26 26 C 1.46493 * 120.00476 * 180.02562 * 25 23 22 27 27 C 1.46501 * 119.99415 * 0.02562 * 25 23 22 28 28 H 1.08997 * 109.47443 * 89.97447 * 1 2 3 29 29 H 1.09003 * 109.47303 * 209.97173 * 1 2 3 30 30 H 1.08995 * 109.47255 * 329.97026 * 1 2 3 31 31 H 1.08998 * 109.45935 * 294.17042 * 7 6 5 32 32 H 1.08994 * 109.46554 * 54.14299 * 7 6 5 33 33 H 1.09003 * 109.50195 * 299.23303 * 8 7 6 34 34 H 1.08999 * 109.49980 * 179.12143 * 8 7 6 35 35 H 1.09004 * 109.52026 * 62.25369 * 9 8 7 36 36 H 0.97006 * 120.00499 * 180.02562 * 13 12 10 37 37 H 1.09005 * 109.50625 * 297.71072 * 18 9 8 38 38 H 1.09003 * 109.50487 * 177.59604 * 18 9 8 39 39 H 1.09008 * 109.46235 * 305.85720 * 19 6 5 40 40 H 1.08997 * 109.46490 * 65.82231 * 19 6 5 41 41 H 1.08991 * 109.46966 * 208.66466 * 21 20 5 42 42 H 1.08995 * 109.46622 * 328.66805 * 21 20 5 43 43 H 1.09002 * 109.47641 * 299.34568 * 22 21 20 44 44 H 1.09006 * 109.47215 * 59.35069 * 22 21 20 45 45 H 1.09002 * 109.47373 * 59.99789 * 26 25 23 46 46 H 1.08995 * 109.47179 * 180.02562 * 26 25 23 47 47 H 1.09009 * 109.46975 * 299.99902 * 26 25 23 48 48 H 1.09001 * 109.46918 * 90.00146 * 27 25 23 49 49 H 1.08994 * 109.47278 * 209.99814 * 27 25 23 50 50 H 1.09003 * 109.47617 * 330.00519 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2792 1.0495 0.0000 4 7 3.5129 0.6888 -0.0005 5 6 3.5945 -0.6209 -0.0015 6 7 4.7579 -1.3737 -0.0028 7 6 5.5620 -1.1018 1.1956 8 6 6.7612 -2.0518 1.2332 9 6 7.6060 -1.8499 -0.0278 10 6 8.7555 -2.8244 -0.0253 11 1 8.8543 -3.5449 -0.8238 12 6 9.6810 -2.7962 0.9963 13 7 9.5610 -1.9186 1.9683 14 14 11.1062 -4.0038 0.9989 15 1 11.9203 -3.8115 -0.2280 16 1 11.9520 -3.7686 2.1967 17 1 10.5789 -5.3917 1.0308 18 6 6.7327 -2.0918 -1.2619 19 6 5.5343 -1.1406 -1.2272 20 7 2.3174 -1.1014 -0.0067 21 6 1.9009 -2.5059 -0.0141 22 6 1.7848 -3.0110 1.4254 23 6 1.3408 -4.4511 1.4182 24 8 1.1377 -5.0178 0.3653 25 7 1.1693 -5.1094 2.5817 26 6 0.7383 -6.5095 2.5746 27 6 1.4141 -4.4247 3.8535 28 1 -0.3634 0.0005 -1.0276 29 1 -0.3634 -0.8902 0.5134 30 1 -0.3633 0.8897 0.5143 31 1 5.9159 -0.0712 1.1693 32 1 4.9507 -1.2532 2.0852 33 1 6.4080 -3.0823 1.2734 34 1 7.3662 -1.8393 2.1146 35 1 7.9916 -0.8305 -0.0485 36 1 10.2123 -1.8984 2.6869 37 1 6.3790 -3.1229 -1.2610 38 1 7.3174 -1.9079 -2.1632 39 1 4.9027 -1.3202 -2.0974 40 1 5.8883 -0.1098 -1.2421 41 1 0.9343 -2.5956 -0.5097 42 1 2.6404 -3.1013 -0.5495 43 1 2.7542 -2.9322 1.9175 44 1 1.0537 -2.4082 1.9641 45 1 1.4698 -7.1122 2.0364 46 1 0.6546 -6.8690 3.6001 47 1 -0.2309 -6.5888 2.0819 48 1 0.4929 -3.9528 4.1952 49 1 1.7492 -5.1480 4.5969 50 1 2.1822 -3.6639 3.7147 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001381614654.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:39:33 Heat of formation + Delta-G solvation = 29.533132 kcal Electronic energy + Delta-G solvation = -30242.961770 eV Core-core repulsion = 26305.914535 eV Total energy + Delta-G solvation = -3937.047236 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -44.07501 -40.96863 -39.92804 -36.85445 -36.47483 -35.91620 -33.65914 -32.58867 -31.92974 -31.59410 -29.00507 -28.49679 -27.41307 -27.29975 -25.15215 -24.33389 -23.91664 -22.27993 -21.69938 -20.32323 -20.31099 -18.72111 -18.44530 -17.81608 -17.52660 -17.20745 -16.88735 -16.76352 -16.47808 -15.72231 -15.64982 -15.07644 -14.94550 -14.62578 -14.49313 -14.35854 -14.25029 -13.93202 -13.86928 -13.59459 -13.53722 -13.47667 -13.37744 -13.26027 -12.93221 -12.79048 -12.75255 -12.62868 -12.44350 -12.44024 -12.13963 -12.00217 -11.65789 -11.40258 -11.31804 -10.96547 -10.92398 -10.76080 -10.39553 -10.00812 -9.82623 -9.74493 -8.06768 -6.19797 0.62619 1.13924 1.44171 1.44739 1.48398 1.52321 1.72879 2.02311 2.45447 2.68660 3.20793 3.38422 3.51694 3.55322 3.67373 3.88451 4.02734 4.10906 4.17263 4.19892 4.29327 4.37839 4.42513 4.44331 4.49653 4.51038 4.56420 4.64380 4.69664 4.71430 4.74666 4.85211 4.90410 4.91682 4.91868 4.97643 4.99604 5.05306 5.19218 5.20828 5.44015 5.47871 5.58810 5.67779 5.73572 5.99372 6.13437 6.23527 6.27845 6.39239 6.90397 7.02234 7.48120 7.66027 8.98108 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.009458 B = 0.003746 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2959.900407 B = 7473.158734 C = 9529.053726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.190 3.810 3 N -0.331 5.331 4 N -0.349 5.349 5 C 0.346 3.654 6 N -0.457 5.457 7 C 0.087 3.913 8 C -0.088 4.088 9 C 0.044 3.956 10 C -0.532 4.532 11 H 0.054 0.946 12 C 0.016 3.984 13 N -0.916 5.916 14 Si 0.951 3.049 15 H -0.274 1.274 16 H -0.285 1.285 17 H -0.271 1.271 18 C -0.094 4.094 19 C 0.081 3.919 20 N -0.461 5.461 21 C 0.131 3.869 22 C -0.144 4.144 23 C 0.519 3.481 24 O -0.577 6.577 25 N -0.621 5.621 26 C 0.085 3.915 27 C 0.068 3.932 28 H 0.102 0.898 29 H 0.103 0.897 30 H 0.106 0.894 31 H 0.023 0.977 32 H 0.072 0.928 33 H 0.042 0.958 34 H 0.071 0.929 35 H -0.010 1.010 36 H 0.261 0.739 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.077 0.923 40 H 0.030 0.970 41 H 0.123 0.877 42 H 0.091 0.909 43 H 0.098 0.902 44 H 0.126 0.874 45 H 0.047 0.953 46 H 0.106 0.894 47 H 0.059 0.941 48 H 0.079 0.921 49 H 0.091 0.909 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.934 -5.206 4.097 24.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.078 4.078 3 N -0.171 5.171 4 N -0.192 5.192 5 C -0.012 4.012 6 N -0.183 5.183 7 C -0.040 4.040 8 C -0.127 4.127 9 C 0.025 3.975 10 C -0.570 4.570 11 H 0.072 0.928 12 C -0.183 4.183 13 N -0.556 5.556 14 Si 0.777 3.223 15 H -0.200 1.200 16 H -0.211 1.211 17 H -0.196 1.196 18 C -0.132 4.132 19 C -0.046 4.046 20 N -0.154 5.154 21 C 0.009 3.991 22 C -0.184 4.184 23 C 0.307 3.693 24 O -0.457 6.457 25 N -0.353 5.353 26 C -0.057 4.057 27 C -0.074 4.074 28 H 0.121 0.879 29 H 0.121 0.879 30 H 0.125 0.875 31 H 0.041 0.959 32 H 0.090 0.910 33 H 0.061 0.939 34 H 0.090 0.910 35 H 0.008 0.992 36 H 0.070 0.930 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.096 0.904 40 H 0.048 0.952 41 H 0.141 0.859 42 H 0.109 0.891 43 H 0.117 0.883 44 H 0.144 0.856 45 H 0.066 0.934 46 H 0.124 0.876 47 H 0.078 0.922 48 H 0.098 0.902 49 H 0.109 0.891 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -23.658 -4.524 3.745 24.376 hybrid contribution 1.340 -0.951 0.127 1.649 sum -22.317 -5.476 3.872 23.303 Atomic orbital electron populations 1.20501 0.79754 1.06192 1.05694 1.25808 0.98335 0.81423 1.02235 1.73945 0.96415 1.25897 1.20873 1.74590 1.13353 1.09867 1.21360 1.22540 0.86634 0.88227 1.03768 1.58870 1.02818 1.51523 1.05124 1.22066 0.94286 0.98120 0.89500 1.21440 0.93021 0.96437 1.01777 1.18663 0.92575 0.94716 0.91535 1.21489 1.09708 1.17759 1.08037 0.92824 1.25686 1.00115 0.97158 0.95299 1.69990 1.36830 1.36569 1.12183 0.85721 0.79482 0.79726 0.77358 1.19966 1.21057 1.19602 1.21557 0.94110 0.98384 0.99167 1.22071 0.94701 0.98338 0.89536 1.46527 1.05130 1.09236 1.54526 1.21613 1.03794 0.75945 0.97759 1.21898 1.05070 0.93420 0.98040 1.20488 0.76768 0.88649 0.83421 1.90714 1.52851 1.70145 1.31977 1.47900 1.67009 1.13541 1.06888 1.21757 0.99714 0.80126 1.04088 1.22146 1.02620 0.98715 0.83919 0.87923 0.87872 0.87514 0.95884 0.91004 0.93933 0.91049 0.99184 0.93025 0.92037 0.91859 0.90424 0.95195 0.85930 0.89096 0.88339 0.85641 0.93445 0.87572 0.92215 0.90203 0.89065 0.90891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.75 10.07 71.24 0.72 -0.03 16 2 C 0.19 4.67 8.07 137.64 1.11 5.78 16 3 N -0.33 -11.23 12.18 -49.53 -0.60 -11.83 16 4 N -0.35 -13.54 12.19 -58.01 -0.71 -14.25 16 5 C 0.35 11.90 6.41 260.12 1.67 13.57 16 6 N -0.46 -16.69 4.67 -706.15 -3.30 -19.99 16 7 C 0.09 3.50 5.37 86.33 0.46 3.96 16 8 C -0.09 -4.11 5.12 30.65 0.16 -3.95 16 9 C 0.04 2.19 2.16 -11.46 -0.02 2.16 16 10 C -0.53 -29.03 8.56 25.60 0.22 -28.81 16 11 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16 12 C 0.02 0.88 5.31 84.66 0.45 1.33 16 13 N -0.92 -52.29 11.37 21.45 0.24 -52.04 16 14 Si 0.95 43.21 29.54 68.60 2.03 45.24 16 15 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 16 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 17 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 18 C -0.09 -3.92 5.32 30.64 0.16 -3.76 16 19 C 0.08 3.05 5.39 86.33 0.47 3.52 16 20 N -0.46 -12.03 2.81 -514.87 -1.45 -13.48 16 21 C 0.13 2.74 5.20 86.38 0.45 3.18 16 22 C -0.14 -2.47 4.58 29.85 0.14 -2.34 16 23 C 0.52 10.53 7.67 87.66 0.67 11.20 16 24 O -0.58 -15.97 15.98 -3.03 -0.05 -16.02 16 25 N -0.62 -9.50 3.27 -871.90 -2.85 -12.36 16 26 C 0.09 1.12 10.16 127.77 1.30 2.41 16 27 C 0.07 0.59 10.21 127.77 1.30 1.90 16 28 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.10 0.69 7.90 -2.39 -0.02 0.67 16 30 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.07 2.60 8.10 -2.39 -0.02 2.58 16 33 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.07 3.74 6.18 -2.39 -0.01 3.72 16 35 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 36 H 0.26 14.22 8.31 -92.70 -0.77 13.45 16 37 H 0.06 2.52 8.14 -2.38 -0.02 2.50 16 38 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 39 H 0.08 2.64 8.10 -2.38 -0.02 2.62 16 40 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.12 2.00 7.76 -2.39 -0.02 1.98 16 42 H 0.09 2.34 8.11 -2.39 -0.02 2.32 16 43 H 0.10 1.96 7.40 -2.39 -0.02 1.94 16 44 H 0.13 1.42 8.11 -2.38 -0.02 1.40 16 45 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 46 H 0.11 0.70 7.79 -2.39 -0.02 0.68 16 47 H 0.06 0.80 8.14 -2.38 -0.02 0.79 16 48 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 49 H 0.09 0.55 7.92 -2.39 -0.02 0.53 16 50 H 0.07 0.72 6.44 -2.39 -0.02 0.71 16 Total: -1.00 -74.87 402.37 3.48 -71.39 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: 0.91 Total: 13.20 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: 9.25 Total: 10.13 kcal Atomic # 7 Polarization: -115.28 SS G_CDS: -8.66 Total: -123.95 kcal Atomic # 8 Polarization: -15.97 SS G_CDS: -0.05 Total: -16.02 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -74.87 3.48 -71.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001381614654.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.926 kcal (2) G-P(sol) polarization free energy of solvation -74.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds