Wall clock time and date at job start Tue Mar 31 2020 19:36:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30289 * 126.35014 * 2 1 4 4 N 1.28525 * 110.05878 * 179.76530 * 3 2 1 5 5 C 1.31222 * 109.85797 * 0.44726 * 4 3 2 6 6 N 1.38576 * 126.47398 * 179.82271 * 5 4 3 7 7 C 1.46901 * 110.99993 * 64.70233 * 6 5 4 8 8 C 1.46907 * 110.99846 * 300.75154 * 6 5 4 9 9 H 1.08991 * 109.47000 * 59.99832 * 8 6 5 10 10 C 1.52998 * 109.46912 * 299.99641 * 8 6 5 11 11 C 1.50700 * 109.46962 * 180.02562 * 8 6 5 12 12 H 1.08007 * 119.99945 * 359.97438 * 11 8 6 13 13 C 1.37875 * 119.99991 * 179.97438 * 11 8 6 14 14 N 1.31516 * 120.00001 * 359.97438 * 13 11 8 15 15 Si 1.86806 * 119.99827 * 179.97438 * 13 11 8 16 16 H 1.48498 * 109.47267 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.46502 * 120.00289 * 15 13 11 18 18 H 1.48500 * 109.46702 * 239.99853 * 15 13 11 19 19 N 1.36453 * 107.05033 * 359.56785 * 5 4 3 20 20 C 1.46498 * 127.13531 * 180.23743 * 19 5 4 21 21 C 1.53003 * 109.47230 * 94.81946 * 20 19 5 22 22 C 1.53001 * 109.47254 * 175.09892 * 21 20 19 23 23 C 1.50699 * 109.47302 * 180.02562 * 22 21 20 24 24 O 1.21285 * 119.99567 * 359.97438 * 23 22 21 25 25 N 1.34776 * 120.00192 * 180.02562 * 23 22 21 26 26 C 1.46495 * 119.99854 * 179.97438 * 25 23 22 27 27 C 1.53008 * 117.49736 * 223.74549 * 26 25 23 28 28 C 1.52999 * 117.49770 * 155.08930 * 26 25 23 29 29 H 1.09001 * 109.47371 * 269.95890 * 1 2 3 30 30 H 1.09003 * 109.46861 * 29.95948 * 1 2 3 31 31 H 1.08999 * 109.47376 * 149.95328 * 1 2 3 32 32 H 1.09002 * 109.46787 * 53.82981 * 7 6 5 33 33 H 1.08995 * 109.46809 * 173.82641 * 7 6 5 34 34 H 1.09001 * 109.47045 * 293.83379 * 7 6 5 35 35 H 1.08998 * 109.47903 * 300.00417 * 10 8 6 36 36 H 1.09003 * 109.47268 * 60.00161 * 10 8 6 37 37 H 1.09003 * 109.47083 * 180.02562 * 10 8 6 38 38 H 0.96995 * 120.00002 * 179.97438 * 14 13 11 39 39 H 1.09005 * 109.47354 * 214.82137 * 20 19 5 40 40 H 1.08999 * 109.47312 * 334.82375 * 20 19 5 41 41 H 1.08996 * 109.47261 * 295.09916 * 21 20 19 42 42 H 1.08998 * 109.46723 * 55.10023 * 21 20 19 43 43 H 1.09003 * 109.47308 * 300.00422 * 22 21 20 44 44 H 1.09006 * 109.46625 * 60.00072 * 22 21 20 45 45 H 0.97001 * 119.99811 * 0.02562 * 25 23 22 46 46 H 1.08998 * 115.55411 * 9.41895 * 26 25 23 47 47 H 1.09000 * 117.49681 * 0.02562 * 27 26 25 48 48 H 1.08998 * 117.49423 * 145.02251 * 27 26 25 49 49 H 1.08999 * 117.49931 * 214.98332 * 28 26 25 50 50 H 1.09006 * 117.49786 * 359.97027 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2792 1.0494 0.0000 4 7 3.5129 0.6888 0.0049 5 6 3.5945 -0.6208 -0.0012 6 7 4.7580 -1.3737 -0.0021 7 6 5.5154 -1.1737 1.2406 8 6 5.5838 -1.0652 -1.1773 9 1 5.8511 -0.0086 -1.1662 10 6 4.7957 -1.3785 -2.4508 11 6 6.8370 -1.9014 -1.1441 12 1 7.0036 -2.5927 -0.3311 13 6 7.7709 -1.7842 -2.1517 14 7 7.5677 -0.9429 -3.1419 15 14 9.3247 -2.8203 -2.1101 16 1 9.3134 -3.6812 -0.9002 17 1 9.3828 -3.6739 -3.3239 18 1 10.5125 -1.9299 -2.0738 19 7 2.3174 -1.1013 -0.0008 20 6 1.9009 -2.5059 -0.0016 21 6 1.6406 -2.9615 1.4356 22 6 1.0891 -4.3886 1.4263 23 6 0.8321 -4.8371 2.8419 24 8 1.0673 -4.0890 3.7671 25 7 0.3418 -6.0698 3.0798 26 6 0.0925 -6.5059 4.4559 27 6 0.5309 -7.9209 4.8389 28 6 -0.9562 -7.5989 4.6715 29 1 -0.3634 -0.0007 1.0277 30 1 -0.3633 0.8904 -0.5132 31 1 -0.3634 -0.8895 -0.5145 32 1 4.8689 -1.3710 2.0958 33 1 6.3648 -1.8563 1.2621 34 1 5.8741 -0.1454 1.2860 35 1 4.5282 -2.4351 -2.4619 36 1 3.8890 -0.7740 -2.4750 37 1 5.4086 -1.1501 -3.3228 38 1 8.2249 -0.8601 -3.8505 39 1 0.9884 -2.6140 -0.5880 40 1 2.6890 -3.1183 -0.4397 41 1 2.5730 -2.9359 1.9994 42 1 0.9154 -2.2948 1.9023 43 1 0.1566 -4.4142 0.8625 44 1 1.8144 -5.0552 0.9596 45 1 0.1548 -6.6684 2.3398 46 1 0.1748 -5.7302 5.2172 47 1 1.0051 -8.5271 4.0671 48 1 0.9012 -8.0760 5.8523 49 1 -1.5636 -7.5423 5.5748 50 1 -1.4610 -7.9931 3.7895 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001411690659.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:50 Heat of formation + Delta-G solvation = 72.523952 kcal Electronic energy + Delta-G solvation = -29428.418403 eV Core-core repulsion = 25493.235390 eV Total energy + Delta-G solvation = -3935.183014 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.43853 -40.15811 -37.57527 -36.99213 -35.81357 -33.34515 -32.98157 -32.45242 -31.28695 -29.31095 -27.62273 -27.01718 -25.37770 -24.30109 -23.47836 -22.86833 -21.84688 -21.66620 -20.77158 -20.28751 -19.41968 -17.60342 -16.97124 -16.51257 -16.28507 -16.11415 -15.71833 -15.22134 -14.98938 -14.61401 -14.49383 -14.21263 -13.87310 -13.67041 -13.26300 -13.09410 -12.88155 -12.69802 -12.62016 -12.36898 -12.28707 -12.07021 -11.94777 -11.75949 -11.72550 -11.13991 -11.08655 -10.99390 -10.98606 -10.89304 -10.75997 -10.32960 -10.25720 -10.18835 -10.10192 -9.95147 -9.67231 -9.16931 -9.06639 -8.52304 -8.32722 -7.68839 -6.07294 -4.13751 2.23507 2.27217 2.58347 2.83067 3.26532 3.34536 3.37619 3.41538 3.45619 4.28890 4.32307 4.32952 4.47269 4.50704 4.53969 4.62786 4.66963 4.83599 4.94148 5.07345 5.13980 5.14343 5.24268 5.25340 5.36510 5.40607 5.50415 5.52248 5.59014 5.72209 5.75946 5.85398 6.03898 6.06516 6.14442 6.26605 6.39140 6.54280 6.65774 6.75627 6.91475 6.96903 7.08044 7.19828 7.41352 7.67216 7.76383 7.88661 7.93024 8.19063 8.48036 8.90398 9.32448 9.51133 10.99708 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.010072 B = 0.002998 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2779.425339 B = 9336.138810 C =11402.218697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.154 3.846 3 N -0.293 5.293 4 N -0.321 5.321 5 C 0.384 3.616 6 N -0.473 5.473 7 C 0.051 3.949 8 C 0.224 3.776 9 H 0.021 0.979 10 C -0.129 4.129 11 C -0.509 4.509 12 H 0.067 0.933 13 C 0.062 3.938 14 N -0.888 5.888 15 Si 0.900 3.100 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.284 1.284 19 N -0.469 5.469 20 C 0.114 3.886 21 C -0.116 4.116 22 C -0.136 4.136 23 C 0.519 3.481 24 O -0.533 6.533 25 N -0.707 5.707 26 C 0.079 3.921 27 C -0.194 4.194 28 C -0.190 4.190 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.071 0.929 32 H 0.043 0.957 33 H 0.088 0.912 34 H 0.035 0.965 35 H 0.031 0.969 36 H 0.001 0.999 37 H 0.092 0.908 38 H 0.262 0.738 39 H 0.086 0.914 40 H 0.107 0.893 41 H 0.082 0.918 42 H 0.074 0.926 43 H 0.097 0.903 44 H 0.103 0.897 45 H 0.402 0.598 46 H 0.137 0.863 47 H 0.098 0.902 48 H 0.102 0.898 49 H 0.103 0.897 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.235 -13.881 9.750 25.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.114 4.114 3 N -0.134 5.134 4 N -0.163 5.163 5 C 0.028 3.972 6 N -0.200 5.200 7 C -0.096 4.096 8 C 0.120 3.880 9 H 0.039 0.961 10 C -0.188 4.188 11 C -0.548 4.548 12 H 0.085 0.915 13 C -0.140 4.140 14 N -0.526 5.526 15 Si 0.728 3.272 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.210 1.210 19 N -0.163 5.163 20 C -0.009 4.009 21 C -0.155 4.155 22 C -0.176 4.176 23 C 0.306 3.694 24 O -0.408 6.408 25 N -0.358 5.358 26 C -0.027 4.027 27 C -0.233 4.233 28 C -0.229 4.229 29 H 0.097 0.903 30 H 0.108 0.892 31 H 0.090 0.910 32 H 0.062 0.938 33 H 0.107 0.893 34 H 0.054 0.946 35 H 0.050 0.950 36 H 0.020 0.980 37 H 0.110 0.890 38 H 0.072 0.928 39 H 0.104 0.896 40 H 0.126 0.874 41 H 0.101 0.899 42 H 0.093 0.907 43 H 0.116 0.884 44 H 0.121 0.879 45 H 0.237 0.763 46 H 0.155 0.845 47 H 0.116 0.884 48 H 0.121 0.879 49 H 0.121 0.879 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -18.647 -12.284 10.202 24.550 hybrid contribution 0.570 -1.657 -0.479 1.816 sum -18.078 -13.940 9.724 24.813 Atomic orbital electron populations 1.20079 0.84449 1.03807 1.03292 1.24605 0.96281 0.83054 1.07418 1.73933 0.96969 1.24363 1.18158 1.74680 1.11309 1.09088 1.21271 1.22815 0.86203 0.88309 0.99906 1.59249 1.02918 1.51153 1.06667 1.22189 0.97660 1.01351 0.88414 1.19423 0.89450 0.96518 0.82623 0.96114 1.21797 0.97094 0.97816 1.02045 1.21091 1.02111 1.22994 1.08610 0.91508 1.24923 0.98374 0.95489 0.95256 1.69911 1.35422 1.35871 1.11422 0.86408 0.82815 0.80015 0.77968 1.19666 1.21036 1.20991 1.46315 1.06565 1.07720 1.55706 1.21764 1.02236 0.79293 0.97656 1.21651 1.03325 0.94428 0.96118 1.21573 1.03697 0.98655 0.93719 1.20729 0.75924 0.80879 0.91867 1.90738 1.50522 1.53418 1.46121 1.45429 1.66609 1.16297 1.07435 1.21606 1.02903 0.92236 0.85949 1.23445 0.97200 0.99059 1.03554 1.23390 0.92496 1.03051 1.03929 0.90260 0.89184 0.91007 0.93801 0.89306 0.94648 0.95016 0.97958 0.88995 0.92807 0.89559 0.87429 0.89913 0.90736 0.88430 0.87901 0.76329 0.84506 0.88385 0.87945 0.87880 0.88448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.61 10.26 36.00 0.37 -0.24 16 2 C 0.15 2.59 8.07 -154.02 -1.24 1.34 16 3 N -0.29 -6.21 12.18 32.99 0.40 -5.80 16 4 N -0.32 -7.57 12.13 30.31 0.37 -7.20 16 5 C 0.38 8.19 5.03 -318.87 -1.60 6.58 16 6 N -0.47 -10.44 4.63 -176.08 -0.82 -11.25 16 7 C 0.05 1.06 9.14 60.07 0.55 1.61 16 8 C 0.22 5.76 2.00 -68.86 -0.14 5.62 16 9 H 0.02 0.62 8.08 -51.93 -0.42 0.20 16 10 C -0.13 -3.23 8.84 37.16 0.33 -2.90 16 11 C -0.51 -13.55 7.95 -34.44 -0.27 -13.82 16 12 H 0.07 1.73 6.40 -52.48 -0.34 1.39 16 13 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 14 N -0.89 -25.19 11.32 55.43 0.63 -24.56 16 15 Si 0.90 20.80 29.54 -169.99 -5.02 15.78 16 16 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 N -0.47 -8.00 2.81 -114.08 -0.32 -8.32 16 20 C 0.11 1.39 5.98 -4.04 -0.02 1.37 16 21 C -0.12 -1.29 4.83 -26.73 -0.13 -1.42 16 22 C -0.14 -1.01 5.70 -27.88 -0.16 -1.17 16 23 C 0.52 5.11 7.83 -10.99 -0.09 5.02 16 24 O -0.53 -7.71 15.55 5.55 0.09 -7.62 16 25 N -0.71 -4.97 5.57 -53.81 -0.30 -5.27 16 26 C 0.08 0.58 6.43 -67.93 -0.44 0.14 16 27 C -0.19 -1.10 10.46 -26.69 -0.28 -1.38 16 28 C -0.19 -0.94 10.46 -26.69 -0.28 -1.22 16 29 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.07 0.58 7.38 -51.93 -0.38 0.20 16 32 H 0.04 0.81 8.10 -51.93 -0.42 0.39 16 33 H 0.09 1.79 6.32 -51.93 -0.33 1.47 16 34 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.00 0.04 7.22 -51.93 -0.38 -0.34 16 37 H 0.09 2.51 6.07 -51.93 -0.31 2.19 16 38 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 39 H 0.09 0.77 7.40 -51.93 -0.38 0.39 16 40 H 0.11 1.43 8.12 -51.93 -0.42 1.01 16 41 H 0.08 1.16 8.10 -51.93 -0.42 0.74 16 42 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 43 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.40 1.63 8.83 -40.82 -0.36 1.27 16 46 H 0.14 1.24 7.40 -51.93 -0.38 0.86 16 47 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 50 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 LS Contribution 410.54 15.07 6.19 6.19 Total: -1.00 -35.58 410.54 -10.62 -46.20 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -8.33 Total: 0.76 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: -3.50 Total: 1.11 kcal Atomic # 7 Polarization: -62.37 SS G_CDS: -0.04 Total: -62.41 kcal Atomic # 8 Polarization: -7.71 SS G_CDS: 0.09 Total: -7.62 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -35.58 -10.62 -46.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411690659.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.725 kcal (2) G-P(sol) polarization free energy of solvation -35.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds