Wall clock time and date at job start Tue Mar 31 2020 19:36:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30289 * 126.35014 * 2 1 4 4 N 1.28525 * 110.05878 * 179.76530 * 3 2 1 5 5 C 1.31222 * 109.85797 * 0.44726 * 4 3 2 6 6 N 1.38576 * 126.47398 * 179.82271 * 5 4 3 7 7 C 1.46901 * 110.99993 * 64.70233 * 6 5 4 8 8 C 1.46907 * 110.99846 * 300.75154 * 6 5 4 9 9 H 1.08991 * 109.47000 * 59.99832 * 8 6 5 10 10 C 1.52998 * 109.46912 * 299.99641 * 8 6 5 11 11 C 1.50700 * 109.46962 * 180.02562 * 8 6 5 12 12 H 1.08007 * 119.99945 * 359.97438 * 11 8 6 13 13 C 1.37875 * 119.99991 * 179.97438 * 11 8 6 14 14 N 1.31516 * 120.00001 * 359.97438 * 13 11 8 15 15 Si 1.86806 * 119.99827 * 179.97438 * 13 11 8 16 16 H 1.48498 * 109.47267 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.46502 * 120.00289 * 15 13 11 18 18 H 1.48500 * 109.46702 * 239.99853 * 15 13 11 19 19 N 1.36453 * 107.05033 * 359.56785 * 5 4 3 20 20 C 1.46498 * 127.13531 * 180.23743 * 19 5 4 21 21 C 1.53003 * 109.47230 * 94.81946 * 20 19 5 22 22 C 1.53001 * 109.47254 * 175.09892 * 21 20 19 23 23 C 1.50699 * 109.47302 * 180.02562 * 22 21 20 24 24 O 1.21285 * 119.99567 * 359.97438 * 23 22 21 25 25 N 1.34776 * 120.00192 * 180.02562 * 23 22 21 26 26 C 1.46495 * 119.99854 * 179.97438 * 25 23 22 27 27 C 1.53008 * 117.49736 * 223.74549 * 26 25 23 28 28 C 1.52999 * 117.49770 * 155.08930 * 26 25 23 29 29 H 1.09001 * 109.47371 * 269.95890 * 1 2 3 30 30 H 1.09003 * 109.46861 * 29.95948 * 1 2 3 31 31 H 1.08999 * 109.47376 * 149.95328 * 1 2 3 32 32 H 1.09002 * 109.46787 * 53.82981 * 7 6 5 33 33 H 1.08995 * 109.46809 * 173.82641 * 7 6 5 34 34 H 1.09001 * 109.47045 * 293.83379 * 7 6 5 35 35 H 1.08998 * 109.47903 * 300.00417 * 10 8 6 36 36 H 1.09003 * 109.47268 * 60.00161 * 10 8 6 37 37 H 1.09003 * 109.47083 * 180.02562 * 10 8 6 38 38 H 0.96995 * 120.00002 * 179.97438 * 14 13 11 39 39 H 1.09005 * 109.47354 * 214.82137 * 20 19 5 40 40 H 1.08999 * 109.47312 * 334.82375 * 20 19 5 41 41 H 1.08996 * 109.47261 * 295.09916 * 21 20 19 42 42 H 1.08998 * 109.46723 * 55.10023 * 21 20 19 43 43 H 1.09003 * 109.47308 * 300.00422 * 22 21 20 44 44 H 1.09006 * 109.46625 * 60.00072 * 22 21 20 45 45 H 0.97001 * 119.99811 * 0.02562 * 25 23 22 46 46 H 1.08998 * 115.55411 * 9.41895 * 26 25 23 47 47 H 1.09000 * 117.49681 * 0.02562 * 27 26 25 48 48 H 1.08998 * 117.49423 * 145.02251 * 27 26 25 49 49 H 1.08999 * 117.49931 * 214.98332 * 28 26 25 50 50 H 1.09006 * 117.49786 * 359.97027 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2792 1.0494 0.0000 4 7 3.5129 0.6888 0.0049 5 6 3.5945 -0.6208 -0.0012 6 7 4.7580 -1.3737 -0.0021 7 6 5.5154 -1.1737 1.2406 8 6 5.5838 -1.0652 -1.1773 9 1 5.8511 -0.0086 -1.1662 10 6 4.7957 -1.3785 -2.4508 11 6 6.8370 -1.9014 -1.1441 12 1 7.0036 -2.5927 -0.3311 13 6 7.7709 -1.7842 -2.1517 14 7 7.5677 -0.9429 -3.1419 15 14 9.3247 -2.8203 -2.1101 16 1 9.3134 -3.6812 -0.9002 17 1 9.3828 -3.6739 -3.3239 18 1 10.5125 -1.9299 -2.0738 19 7 2.3174 -1.1013 -0.0008 20 6 1.9009 -2.5059 -0.0016 21 6 1.6406 -2.9615 1.4356 22 6 1.0891 -4.3886 1.4263 23 6 0.8321 -4.8371 2.8419 24 8 1.0673 -4.0890 3.7671 25 7 0.3418 -6.0698 3.0798 26 6 0.0925 -6.5059 4.4559 27 6 0.5309 -7.9209 4.8389 28 6 -0.9562 -7.5989 4.6715 29 1 -0.3634 -0.0007 1.0277 30 1 -0.3633 0.8904 -0.5132 31 1 -0.3634 -0.8895 -0.5145 32 1 4.8689 -1.3710 2.0958 33 1 6.3648 -1.8563 1.2621 34 1 5.8741 -0.1454 1.2860 35 1 4.5282 -2.4351 -2.4619 36 1 3.8890 -0.7740 -2.4750 37 1 5.4086 -1.1501 -3.3228 38 1 8.2249 -0.8601 -3.8505 39 1 0.9884 -2.6140 -0.5880 40 1 2.6890 -3.1183 -0.4397 41 1 2.5730 -2.9359 1.9994 42 1 0.9154 -2.2948 1.9023 43 1 0.1566 -4.4142 0.8625 44 1 1.8144 -5.0552 0.9596 45 1 0.1548 -6.6684 2.3398 46 1 0.1748 -5.7302 5.2172 47 1 1.0051 -8.5271 4.0671 48 1 0.9012 -8.0760 5.8523 49 1 -1.5636 -7.5423 5.5748 50 1 -1.4610 -7.9931 3.7895 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001411690659.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:49 Heat of formation + Delta-G solvation = 49.030841 kcal Electronic energy + Delta-G solvation = -29429.437141 eV Core-core repulsion = 25493.235390 eV Total energy + Delta-G solvation = -3936.201752 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.91815 -40.87016 -38.80306 -38.15793 -36.93076 -34.95504 -34.12363 -33.37832 -32.58768 -31.27061 -28.81165 -28.18071 -27.28406 -26.09841 -24.38960 -23.49563 -23.26787 -22.44855 -21.59657 -21.44530 -21.08866 -18.62961 -18.28010 -17.90031 -17.42396 -17.15543 -16.92206 -16.76573 -16.33155 -15.68616 -15.55402 -15.39737 -15.09114 -14.98930 -14.63835 -14.23660 -13.93944 -13.86844 -13.61280 -13.54773 -13.42777 -13.11389 -13.03083 -12.88284 -12.78485 -12.68195 -12.48566 -12.41352 -12.32646 -12.22631 -12.20111 -12.05056 -11.87559 -11.48034 -11.47194 -11.10277 -11.06282 -10.86958 -10.58772 -9.87927 -9.74012 -9.55504 -8.14478 -6.28782 0.81831 1.37789 1.44584 1.46885 1.57997 1.58636 1.86756 2.11934 2.42165 2.99277 3.02967 3.17578 3.53906 3.61332 3.71245 3.83032 3.90195 4.05655 4.07240 4.14666 4.17064 4.21424 4.37044 4.42952 4.52909 4.62095 4.68701 4.73628 4.74185 4.77172 4.82102 4.86506 4.87094 4.90479 4.98200 5.00706 5.03495 5.09091 5.20976 5.21916 5.24736 5.37759 5.53674 5.59461 5.66075 5.92409 5.99746 6.15329 6.53662 6.63970 6.82057 7.26362 7.40482 7.80619 8.92999 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.010072 B = 0.002998 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2779.425339 B = 9336.138810 C =11402.218697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.178 3.822 3 N -0.342 5.342 4 N -0.369 5.369 5 C 0.360 3.640 6 N -0.461 5.461 7 C 0.057 3.943 8 C 0.234 3.766 9 H -0.033 1.033 10 C -0.109 4.109 11 C -0.520 4.520 12 H 0.073 0.927 13 C 0.012 3.988 14 N -0.922 5.922 15 Si 0.970 3.030 16 H -0.260 1.260 17 H -0.278 1.278 18 H -0.286 1.286 19 N -0.464 5.464 20 C 0.108 3.892 21 C -0.105 4.105 22 C -0.125 4.125 23 C 0.513 3.487 24 O -0.591 6.591 25 N -0.691 5.691 26 C 0.050 3.950 27 C -0.190 4.190 28 C -0.169 4.169 29 H 0.100 0.900 30 H 0.099 0.901 31 H 0.110 0.890 32 H 0.063 0.937 33 H 0.091 0.909 34 H 0.013 0.987 35 H 0.045 0.955 36 H -0.001 1.001 37 H 0.066 0.934 38 H 0.263 0.737 39 H 0.134 0.866 40 H 0.099 0.901 41 H 0.043 0.957 42 H 0.067 0.933 43 H 0.141 0.859 44 H 0.122 0.878 45 H 0.419 0.581 46 H 0.110 0.890 47 H 0.106 0.894 48 H 0.102 0.898 49 H 0.109 0.891 50 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.675 -17.303 9.414 29.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.091 4.091 3 N -0.182 5.182 4 N -0.212 5.212 5 C 0.002 3.998 6 N -0.187 5.187 7 C -0.091 4.091 8 C 0.128 3.872 9 H -0.016 1.016 10 C -0.167 4.167 11 C -0.558 4.558 12 H 0.091 0.909 13 C -0.187 4.187 14 N -0.561 5.561 15 Si 0.795 3.205 16 H -0.184 1.184 17 H -0.203 1.203 18 H -0.212 1.212 19 N -0.157 5.157 20 C -0.013 4.013 21 C -0.144 4.144 22 C -0.165 4.165 23 C 0.302 3.698 24 O -0.471 6.471 25 N -0.342 5.342 26 C -0.057 4.057 27 C -0.229 4.229 28 C -0.207 4.207 29 H 0.118 0.882 30 H 0.117 0.883 31 H 0.128 0.872 32 H 0.081 0.919 33 H 0.110 0.890 34 H 0.032 0.968 35 H 0.065 0.935 36 H 0.018 0.982 37 H 0.085 0.915 38 H 0.072 0.928 39 H 0.152 0.848 40 H 0.117 0.883 41 H 0.062 0.938 42 H 0.086 0.914 43 H 0.159 0.841 44 H 0.140 0.860 45 H 0.257 0.743 46 H 0.128 0.872 47 H 0.125 0.875 48 H 0.121 0.879 49 H 0.128 0.872 50 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -21.135 -15.773 9.866 28.157 hybrid contribution 1.188 -0.585 -0.305 1.359 sum -19.947 -16.358 9.561 27.511 Atomic orbital electron populations 1.20451 0.79672 1.06173 1.05317 1.25800 0.98438 0.81838 1.03024 1.73833 0.96648 1.26547 1.21221 1.74532 1.13239 1.10829 1.22586 1.22707 0.87221 0.88119 1.01714 1.59185 1.02896 1.50862 1.05791 1.22157 0.98116 1.00009 0.88779 1.19104 0.90302 0.93249 0.84521 1.01565 1.21534 0.96194 0.98415 1.00594 1.21343 1.02650 1.22992 1.08812 0.90857 1.25790 1.01560 0.96553 0.94786 1.70061 1.36559 1.37332 1.12130 0.85327 0.78388 0.78346 0.78478 1.18374 1.20348 1.21207 1.46557 1.04869 1.09740 1.54491 1.22183 1.03869 0.76332 0.98957 1.21481 1.01470 0.96893 0.94597 1.21563 1.06044 0.96196 0.92670 1.21187 0.75252 0.81121 0.92269 1.90723 1.53266 1.55177 1.47908 1.45288 1.65203 1.15688 1.08003 1.21588 1.05941 0.92469 0.85661 1.23504 0.98104 0.97433 1.03854 1.23463 0.92057 1.00327 1.04834 0.88200 0.88263 0.87176 0.91871 0.89004 0.96844 0.93545 0.98226 0.91513 0.92763 0.84790 0.88306 0.93773 0.91383 0.84119 0.86034 0.74282 0.87184 0.87539 0.87918 0.87237 0.86723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.01 10.26 71.24 0.73 -0.28 16 2 C 0.18 5.73 8.07 137.64 1.11 6.84 16 3 N -0.34 -14.77 12.18 -49.54 -0.60 -15.38 16 4 N -0.37 -18.21 12.13 -58.00 -0.70 -18.91 16 5 C 0.36 15.74 5.03 260.11 1.31 17.05 16 6 N -0.46 -20.92 4.63 -711.00 -3.30 -24.21 16 7 C 0.06 2.43 9.14 127.69 1.17 3.60 16 8 C 0.23 12.48 2.00 44.17 0.09 12.57 16 9 H -0.03 -2.11 8.08 -2.39 -0.02 -2.13 16 10 C -0.11 -5.57 8.84 71.98 0.64 -4.93 16 11 C -0.52 -28.07 7.95 25.60 0.20 -27.86 16 12 H 0.07 3.79 6.40 -2.91 -0.02 3.77 16 13 C 0.01 0.67 5.30 84.65 0.45 1.12 16 14 N -0.92 -53.62 11.32 21.45 0.24 -53.37 16 15 Si 0.97 42.69 29.54 68.60 2.03 44.72 16 16 H -0.26 -10.84 7.11 99.48 0.71 -10.14 16 17 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 18 H -0.29 -12.62 7.11 99.48 0.71 -11.92 16 19 N -0.46 -15.32 2.81 -514.85 -1.45 -16.76 16 20 C 0.11 2.32 5.98 86.38 0.52 2.84 16 21 C -0.11 -2.13 4.83 30.60 0.15 -1.99 16 22 C -0.12 -1.42 5.70 29.85 0.17 -1.25 16 23 C 0.51 9.28 7.83 87.66 0.69 9.96 16 24 O -0.59 -17.30 15.55 -3.04 -0.05 -17.35 16 25 N -0.69 -8.18 5.57 -442.53 -2.46 -10.64 16 26 C 0.05 0.67 6.43 44.99 0.29 0.96 16 27 C -0.19 -1.81 10.46 30.62 0.32 -1.49 16 28 C -0.17 -1.25 10.46 30.62 0.32 -0.93 16 29 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.11 1.14 7.38 -2.39 -0.02 1.13 16 32 H 0.06 2.41 8.10 -2.39 -0.02 2.39 16 33 H 0.09 3.79 6.32 -2.39 -0.02 3.78 16 34 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.00 -0.07 7.22 -2.39 -0.02 -0.08 16 37 H 0.07 3.75 6.07 -2.39 -0.01 3.74 16 38 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 39 H 0.13 1.64 7.40 -2.38 -0.02 1.62 16 40 H 0.10 2.38 8.12 -2.39 -0.02 2.36 16 41 H 0.04 1.24 8.10 -2.39 -0.02 1.22 16 42 H 0.07 1.47 8.10 -2.39 -0.02 1.45 16 43 H 0.14 0.45 8.14 -2.39 -0.02 0.43 16 44 H 0.12 1.01 8.14 -2.38 -0.02 0.99 16 45 H 0.42 1.90 8.83 -92.71 -0.82 1.08 16 46 H 0.11 2.09 7.40 -2.39 -0.02 2.07 16 47 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 48 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 49 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 50 H 0.11 0.48 8.14 -2.38 -0.02 0.46 16 Total: -1.00 -84.73 410.54 1.98 -82.75 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: 0.12 Total: 12.96 kcal Atomic # 6 Polarization: 8.06 SS G_CDS: 8.14 Total: 16.20 kcal Atomic # 7 Polarization: -131.01 SS G_CDS: -8.27 Total: -139.28 kcal Atomic # 8 Polarization: -17.30 SS G_CDS: -0.05 Total: -17.35 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Total: -84.73 1.98 -82.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411690659.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.780 kcal (2) G-P(sol) polarization free energy of solvation -84.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds