Wall clock time and date at job start Tue Mar 31 2020 20:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.46905 * 2 1 4 4 N 1.30297 * 126.34585 * 90.02392 * 3 2 1 5 5 N 1.28530 * 110.05235 * 179.73463 * 4 3 2 6 6 C 1.31215 * 109.85806 * 0.02562 * 5 4 3 7 7 N 1.38587 * 126.47189 * 179.97438 * 6 5 4 8 8 C 1.46842 * 110.99888 * 59.27999 * 7 6 5 9 9 C 1.53041 * 109.52508 * 174.16354 * 8 7 6 10 10 C 1.53122 * 109.27768 * 59.17988 * 9 8 7 11 11 C 1.50695 * 109.52080 * 182.44296 * 10 9 8 12 12 H 1.08005 * 119.99977 * 119.68262 * 11 10 9 13 13 C 1.37876 * 120.00452 * 299.68348 * 11 10 9 14 14 N 1.31518 * 119.99523 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00533 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.46880 * 59.99277 * 15 13 11 17 17 H 1.48497 * 109.47326 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.46944 * 299.99959 * 15 13 11 19 19 C 1.53119 * 109.15938 * 302.34641 * 10 9 8 20 20 C 1.46849 * 110.99728 * 295.07400 * 7 6 5 21 21 N 1.36452 * 107.05793 * 359.97438 * 6 5 4 22 22 C 1.46498 * 127.13565 * 180.02562 * 21 6 5 23 23 C 1.53008 * 109.46760 * 275.27076 * 22 21 6 24 24 C 1.50707 * 109.46949 * 180.02562 * 23 22 21 25 25 O 1.21283 * 119.99908 * 0.02562 * 24 23 22 26 26 N 1.34773 * 119.99930 * 180.02562 * 24 23 22 27 27 C 1.46494 * 119.99705 * 180.02562 * 26 24 23 28 28 H 1.08998 * 109.47176 * 60.00107 * 1 2 3 29 29 H 1.09003 * 109.46974 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46923 * 299.99866 * 1 2 3 31 31 H 1.08997 * 109.47627 * 240.00003 * 2 1 3 32 32 H 1.09003 * 109.47614 * 120.00053 * 2 1 3 33 33 H 1.09000 * 109.46374 * 294.17636 * 8 7 6 34 34 H 1.08996 * 109.46796 * 54.14779 * 8 7 6 35 35 H 1.09005 * 109.50238 * 299.24048 * 9 8 7 36 36 H 1.08997 * 109.50520 * 179.12222 * 9 8 7 37 37 H 1.08995 * 109.52468 * 62.25386 * 10 9 8 38 38 H 0.97002 * 119.99728 * 179.97438 * 14 13 11 39 39 H 1.09002 * 109.50513 * 297.71644 * 19 10 9 40 40 H 1.09003 * 109.50398 * 177.59661 * 19 10 9 41 41 H 1.08999 * 109.46619 * 305.85141 * 20 7 6 42 42 H 1.08998 * 109.46297 * 65.82299 * 20 7 6 43 43 H 1.08997 * 109.47753 * 35.27512 * 22 21 6 44 44 H 1.09003 * 109.47271 * 155.27926 * 22 21 6 45 45 H 1.08996 * 109.47518 * 300.00162 * 23 22 21 46 46 H 1.08997 * 109.46804 * 60.00750 * 23 22 21 47 47 H 0.96997 * 119.99834 * 0.02562 * 26 24 23 48 48 H 1.09005 * 109.47469 * 299.99745 * 27 26 24 49 49 H 1.08996 * 109.47915 * 60.00270 * 27 26 24 50 50 H 1.09003 * 109.46877 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2901 2.1488 1.0495 5 7 2.7064 3.3101 0.6889 6 6 2.7362 3.3861 -0.6207 7 7 3.1291 4.4813 -1.3736 8 6 4.5150 4.8592 -1.0693 9 6 4.9614 5.9739 -2.0182 10 6 4.0349 7.1814 -1.8508 11 6 4.4325 8.2601 -2.8251 12 1 3.7272 8.6042 -3.5671 13 6 5.6966 8.8077 -2.7693 14 7 6.5553 8.3890 -1.8654 15 14 6.1893 10.1453 -3.9766 16 1 5.2852 11.3126 -3.8180 17 1 7.5887 10.5634 -3.7082 18 1 6.0853 9.6235 -5.3631 19 6 2.5919 6.7497 -2.1262 20 6 2.2143 5.6125 -1.1741 21 7 2.3073 2.1832 -1.1013 22 6 2.1702 1.7900 -2.5059 23 6 0.8127 2.2563 -3.0358 24 6 0.6714 1.8513 -4.4805 25 8 1.5679 1.2486 -5.0318 26 7 -0.4512 2.1589 -5.1599 27 6 -0.5888 1.7647 -6.5641 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 4.5776 5.2119 -0.0398 34 1 5.1640 3.9927 -1.1962 35 1 4.9122 5.6173 -3.0471 36 1 5.9849 6.2649 -1.7818 37 1 4.1132 7.5622 -0.8325 38 1 7.4448 8.7740 -1.8264 39 1 2.5054 6.4053 -3.1567 40 1 1.9224 7.5950 -1.9670 41 1 1.1921 5.2932 -1.3772 42 1 2.2877 5.9617 -0.1442 43 1 2.9663 2.2498 -3.0914 44 1 2.2390 0.7052 -2.5879 45 1 0.0166 1.7964 -2.4504 46 1 0.7439 3.3410 -2.9538 47 1 -1.1680 2.6412 -4.7190 48 1 0.2076 2.2235 -7.1500 49 1 -0.5208 0.6799 -6.6454 50 1 -1.5554 2.0978 -6.9419 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001433330677.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:48 Heat of formation + Delta-G solvation = 34.847478 kcal Electronic energy + Delta-G solvation = -30193.111713 eV Core-core repulsion = 26256.294925 eV Total energy + Delta-G solvation = -3936.816788 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.88054 -39.99028 -38.33318 -35.75777 -34.91075 -34.48376 -33.46918 -31.50308 -31.11276 -29.97035 -28.54730 -27.41864 -25.77358 -24.45433 -24.12188 -22.66968 -22.21405 -20.91916 -20.78542 -20.24040 -18.56937 -17.97524 -16.90392 -16.47215 -16.29143 -16.21224 -15.90553 -15.63249 -14.97352 -14.58200 -14.43052 -14.18774 -14.09750 -13.85813 -13.39186 -12.99196 -12.93720 -12.86406 -12.73672 -12.58709 -12.51970 -12.37980 -12.01876 -11.81406 -11.61660 -11.37409 -11.27794 -11.02691 -10.87982 -10.61527 -10.41156 -10.37321 -10.30536 -10.14306 -9.99425 -9.54574 -9.50562 -9.10292 -8.84870 -8.72875 -8.32045 -8.29145 -5.98905 -4.04785 1.79931 2.23751 2.29790 2.93308 2.98018 3.32122 3.37401 3.39337 4.03348 4.18849 4.33675 4.43711 4.44892 4.58115 4.65696 4.87527 4.95085 4.95665 5.13665 5.18762 5.21665 5.31102 5.35320 5.39619 5.46344 5.50178 5.56350 5.63690 5.78344 5.86874 5.95042 5.98895 6.00167 6.09992 6.19011 6.22243 6.45025 6.49837 6.69370 6.75354 6.91524 7.04762 7.05403 7.34720 7.39442 7.64780 7.75062 7.84054 7.98856 8.09438 8.43624 8.90250 8.98296 9.59919 11.07422 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.010670 B = 0.003509 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2623.445386 B = 7976.762656 C = 9957.993513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.033 4.033 3 C 0.168 3.832 4 N -0.288 5.288 5 N -0.313 5.313 6 C 0.363 3.637 7 N -0.466 5.466 8 C 0.070 3.930 9 C -0.103 4.103 10 C 0.047 3.953 11 C -0.513 4.513 12 H 0.054 0.946 13 C 0.062 3.938 14 N -0.890 5.890 15 Si 0.890 3.110 16 H -0.278 1.278 17 H -0.288 1.288 18 H -0.278 1.278 19 C -0.105 4.105 20 C 0.073 3.927 21 N -0.467 5.467 22 C 0.132 3.868 23 C -0.157 4.157 24 C 0.522 3.478 25 O -0.535 6.535 26 N -0.735 5.735 27 C 0.087 3.913 28 H 0.051 0.949 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.080 0.920 32 H 0.099 0.901 33 H 0.045 0.955 34 H 0.056 0.944 35 H 0.045 0.955 36 H 0.100 0.900 37 H 0.026 0.974 38 H 0.261 0.739 39 H 0.057 0.943 40 H 0.058 0.942 41 H 0.055 0.945 42 H 0.046 0.954 43 H 0.111 0.889 44 H 0.099 0.901 45 H 0.097 0.903 46 H 0.108 0.892 47 H 0.404 0.596 48 H 0.062 0.938 49 H 0.060 0.940 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.238 -17.280 -3.502 23.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.073 4.073 3 C -0.099 4.099 4 N -0.128 5.128 5 N -0.156 5.156 6 C 0.007 3.993 7 N -0.193 5.193 8 C -0.056 4.056 9 C -0.142 4.142 10 C 0.029 3.971 11 C -0.551 4.551 12 H 0.072 0.928 13 C -0.139 4.139 14 N -0.529 5.529 15 Si 0.718 3.282 16 H -0.204 1.204 17 H -0.214 1.214 18 H -0.203 1.203 19 C -0.143 4.143 20 C -0.053 4.053 21 N -0.161 5.161 22 C 0.008 3.992 23 C -0.198 4.198 24 C 0.308 3.692 25 O -0.412 6.412 26 N -0.387 5.387 27 C -0.057 4.057 28 H 0.070 0.930 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.099 0.901 32 H 0.117 0.883 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.118 0.882 37 H 0.044 0.956 38 H 0.071 0.929 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.064 0.936 43 H 0.129 0.871 44 H 0.117 0.883 45 H 0.116 0.884 46 H 0.127 0.873 47 H 0.237 0.763 48 H 0.081 0.919 49 H 0.078 0.922 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -15.248 -17.393 -2.910 23.313 hybrid contribution -0.134 0.885 -1.143 1.452 sum -15.382 -16.508 -4.053 22.924 Atomic orbital electron populations 1.21772 0.93814 1.02374 1.02521 1.19950 0.96424 0.86518 1.04391 1.24744 1.04929 0.97505 0.82723 1.73999 1.15612 0.99103 1.24130 1.74700 1.19413 1.12822 1.08686 1.22762 1.00128 0.87955 0.88467 1.58976 1.05589 1.03301 1.51401 1.22385 0.83710 0.99273 1.00218 1.21745 1.03507 0.92683 0.96224 1.18698 0.88327 0.92793 0.97287 1.21114 0.98137 1.19543 1.16298 0.92755 1.24965 0.96669 0.96752 0.95535 1.69854 1.06215 1.42611 1.34212 0.86690 0.77487 0.82344 0.81645 1.20363 1.21350 1.20342 1.21727 1.00464 0.94351 0.97743 1.22199 0.93273 0.89760 1.00108 1.46400 1.49648 1.11949 1.08076 1.21463 0.98066 1.01910 0.77754 1.21992 0.99307 1.05010 0.93442 1.20326 0.81856 0.78752 0.88254 1.90747 1.39542 1.40502 1.70401 1.45767 1.19640 1.59953 1.13358 1.21560 1.02162 1.00810 0.81195 0.92960 0.91385 0.91665 0.90112 0.88289 0.93629 0.92585 0.93624 0.88217 0.95596 0.92922 0.92393 0.92374 0.92678 0.93577 0.87065 0.88295 0.88433 0.87339 0.76288 0.91917 0.92178 0.90574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.89 37.16 0.37 -0.66 16 2 C -0.03 -0.29 6.30 -27.88 -0.18 -0.46 16 3 C 0.17 2.28 7.32 -154.01 -1.13 1.15 16 4 N -0.29 -5.00 12.18 32.99 0.40 -4.60 16 5 N -0.31 -6.04 12.18 30.32 0.37 -5.67 16 6 C 0.36 6.29 6.42 -318.87 -2.05 4.24 16 7 N -0.47 -8.41 4.67 -174.55 -0.82 -9.22 16 8 C 0.07 1.42 5.36 -3.83 -0.02 1.40 16 9 C -0.10 -2.38 5.12 -26.65 -0.14 -2.52 16 10 C 0.05 1.14 2.16 -91.65 -0.20 0.95 16 11 C -0.51 -13.69 8.56 -34.44 -0.29 -13.98 16 12 H 0.05 1.43 7.74 -52.48 -0.41 1.02 16 13 C 0.06 1.69 5.31 -17.82 -0.09 1.59 16 14 N -0.89 -25.05 11.37 55.43 0.63 -24.42 16 15 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 16 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 17 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 19 C -0.10 -2.08 5.32 -26.65 -0.14 -2.22 16 20 C 0.07 1.31 5.40 -3.83 -0.02 1.29 16 21 N -0.47 -6.48 2.81 -114.08 -0.32 -6.80 16 22 C 0.13 1.49 5.36 -4.04 -0.02 1.47 16 23 C -0.16 -1.42 6.02 -27.88 -0.17 -1.58 16 24 C 0.52 5.25 7.83 -10.98 -0.09 5.16 16 25 O -0.54 -7.41 15.98 5.55 0.09 -7.32 16 26 N -0.74 -5.25 5.71 -67.08 -0.38 -5.63 16 27 C 0.09 0.55 10.70 59.84 0.64 1.19 16 28 H 0.05 0.35 6.84 -51.93 -0.36 -0.01 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.08 0.57 7.18 -51.93 -0.37 0.20 16 32 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.06 1.09 8.10 -51.93 -0.42 0.67 16 35 H 0.04 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.10 2.58 6.17 -51.93 -0.32 2.26 16 37 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 39 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 41 H 0.05 0.86 8.10 -51.93 -0.42 0.44 16 42 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.11 1.49 8.10 -51.93 -0.42 1.07 16 44 H 0.10 0.96 7.06 -51.93 -0.37 0.59 16 45 H 0.10 0.68 6.84 -51.93 -0.36 0.32 16 46 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 47 H 0.40 1.76 8.83 -40.82 -0.36 1.40 16 48 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 49 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 50 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 LS Contribution 401.96 15.07 6.06 6.06 Total: -1.00 -33.27 401.96 -10.95 -44.22 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -8.43 Total: 0.37 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: -3.53 Total: -2.98 kcal Atomic # 7 Polarization: -56.23 SS G_CDS: -0.12 Total: -56.35 kcal Atomic # 8 Polarization: -7.41 SS G_CDS: 0.09 Total: -7.32 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.27 -10.95 -44.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433330677.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.069 kcal (2) G-P(sol) polarization free energy of solvation -33.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds