Wall clock time and date at job start Tue Mar 31 2020 20:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50702 * 109.47019 * 2 1 4 4 N 1.30297 * 126.34496 * 269.95999 * 3 2 1 5 5 N 1.28530 * 110.05190 * 180.02562 * 4 3 2 6 6 C 1.31223 * 109.86104 * 359.74030 * 5 4 3 7 7 N 1.38573 * 126.47576 * 180.25622 * 6 5 4 8 8 C 1.46852 * 110.99898 * 66.70149 * 7 6 5 9 9 C 1.53035 * 109.52596 * 174.15733 * 8 7 6 10 10 C 1.53125 * 109.27243 * 59.18310 * 9 8 7 11 11 C 1.50700 * 109.51965 * 182.43996 * 10 9 8 12 12 H 1.08002 * 120.00309 * 119.68289 * 11 10 9 13 13 C 1.37883 * 120.00084 * 299.68236 * 11 10 9 14 14 N 1.31511 * 119.99979 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99974 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47036 * 60.00321 * 15 13 11 17 17 H 1.48502 * 109.46875 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47280 * 300.00140 * 15 13 11 19 19 C 1.53119 * 109.16250 * 302.34077 * 10 9 8 20 20 C 1.46849 * 110.99983 * 302.49577 * 7 6 5 21 21 N 1.36454 * 107.04863 * 0.40826 * 6 5 4 22 22 C 1.46504 * 127.13227 * 179.87525 * 21 6 5 23 23 C 1.50695 * 109.46845 * 269.55015 * 22 21 6 24 24 O 1.21280 * 120.00408 * 359.97438 * 23 22 21 25 25 N 1.34781 * 120.00052 * 180.02562 * 23 22 21 26 26 C 1.46495 * 120.00194 * 179.97438 * 25 23 22 27 27 C 1.46500 * 119.99752 * 359.72120 * 25 23 22 28 28 H 1.08999 * 109.47210 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47025 * 299.99836 * 1 2 3 30 30 H 1.09001 * 109.47442 * 60.00130 * 1 2 3 31 31 H 1.09003 * 109.47025 * 240.00164 * 2 1 3 32 32 H 1.09001 * 109.47442 * 119.99870 * 2 1 3 33 33 H 1.09004 * 109.46494 * 294.17864 * 8 7 6 34 34 H 1.09002 * 109.45690 * 54.14156 * 8 7 6 35 35 H 1.08997 * 109.50484 * 299.24604 * 9 8 7 36 36 H 1.08996 * 109.50401 * 179.11671 * 9 8 7 37 37 H 1.08995 * 109.52781 * 62.25231 * 10 9 8 38 38 H 0.96997 * 119.99821 * 179.97438 * 14 13 11 39 39 H 1.09004 * 109.50479 * 297.71848 * 19 10 9 40 40 H 1.08994 * 109.50624 * 177.59756 * 19 10 9 41 41 H 1.08993 * 109.46009 * 305.84778 * 20 7 6 42 42 H 1.08997 * 109.46518 * 65.82284 * 20 7 6 43 43 H 1.08999 * 109.47096 * 149.54798 * 22 21 6 44 44 H 1.08998 * 109.47386 * 29.54594 * 22 21 6 45 45 H 1.08996 * 109.47388 * 359.97438 * 26 25 23 46 46 H 1.09003 * 109.47215 * 120.00124 * 26 25 23 47 47 H 1.09002 * 109.47215 * 239.99689 * 26 25 23 48 48 H 1.09000 * 109.47422 * 90.00079 * 27 25 23 49 49 H 1.08997 * 109.47326 * 210.00439 * 27 25 23 50 50 H 1.09003 * 109.47075 * 330.00166 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 7 2.2903 2.1486 -1.0495 5 7 2.7018 3.3117 -0.6889 6 6 2.7232 3.3907 0.6208 7 7 3.1047 4.4898 1.3736 8 6 2.1606 5.6009 1.1986 9 6 2.5294 6.7404 2.1512 10 6 3.9568 7.2071 1.8522 11 6 4.3474 8.2886 2.8263 12 1 5.1936 8.1450 3.4819 13 6 3.6246 9.4615 2.8806 14 7 2.5945 9.6366 2.0819 15 14 4.1084 10.8017 4.0885 16 1 5.4956 11.2482 3.8030 17 1 3.1800 11.9523 3.9491 18 1 4.0344 10.2703 5.4732 19 6 4.9138 6.0203 1.9944 20 6 4.4758 4.9016 1.0463 21 7 2.3022 2.1850 1.1013 22 6 2.1622 1.7928 2.5059 23 6 3.4524 1.1810 2.9875 24 8 4.3958 1.0818 2.2319 25 7 3.5576 0.7430 4.2578 26 6 4.8117 0.1477 4.7259 27 6 2.4197 0.8673 5.1721 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.2068 5.9582 0.1698 34 1 1.1499 5.2566 1.4182 35 1 2.4700 6.3876 3.1808 36 1 1.8379 7.5710 2.0099 37 1 4.0075 7.5960 0.8352 38 1 2.0858 10.4616 2.1204 39 1 4.8919 5.6562 3.0217 40 1 5.9257 6.3364 1.7413 41 1 5.1467 4.0496 1.1556 42 1 4.5111 5.2621 0.0183 43 1 1.3568 1.0645 2.6012 44 1 1.9302 2.6718 3.1072 45 1 5.5378 0.1442 3.9131 46 1 5.2019 0.7313 5.5597 47 1 4.6282 -0.8757 5.0532 48 1 1.8019 -0.0284 5.1072 49 1 2.7845 0.9839 6.1925 50 1 1.8259 1.7389 4.8967 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001433334618.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:12 Heat of formation + Delta-G solvation = 53.507045 kcal Electronic energy + Delta-G solvation = -30687.966591 eV Core-core repulsion = 26751.958943 eV Total energy + Delta-G solvation = -3936.007649 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.84746 -40.06311 -38.28472 -35.92739 -35.03113 -34.41037 -33.37198 -31.32336 -29.93530 -29.64383 -28.49385 -27.80102 -25.97599 -25.58061 -24.11268 -22.68612 -22.17324 -21.04736 -20.75409 -19.60614 -18.53897 -17.72691 -17.32220 -16.57470 -16.31353 -16.07603 -15.77187 -15.54239 -14.84226 -14.57220 -14.27847 -14.10199 -13.91422 -13.71936 -13.36604 -13.05400 -12.91154 -12.80446 -12.77216 -12.55893 -12.54391 -12.37200 -12.27813 -11.95699 -11.55434 -11.49569 -11.31827 -11.02116 -10.88440 -10.77577 -10.59227 -10.33698 -10.26887 -10.12218 -9.78408 -9.53898 -9.09627 -9.05387 -8.80534 -8.68266 -8.31523 -8.25223 -5.98658 -4.04177 1.75868 2.21817 2.22855 2.74659 3.06293 3.31731 3.36823 3.39273 4.04081 4.06695 4.23648 4.34260 4.44034 4.61619 4.66141 4.82307 4.90179 4.97825 5.02911 5.19909 5.21650 5.23778 5.31198 5.39424 5.41296 5.53552 5.54375 5.72549 5.82039 5.89170 5.97235 6.00605 6.05126 6.15151 6.21112 6.26294 6.43237 6.57449 6.67610 6.80755 6.88448 6.96235 7.08145 7.37262 7.39669 7.67325 7.75452 7.77560 8.00172 8.09732 8.44994 8.96080 8.99076 9.60265 11.07713 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.012671 B = 0.003514 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2209.198636 B = 7967.078348 C = 9213.813973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.031 4.031 3 C 0.179 3.821 4 N -0.286 5.286 5 N -0.312 5.312 6 C 0.375 3.625 7 N -0.467 5.467 8 C 0.068 3.932 9 C -0.101 4.101 10 C 0.047 3.953 11 C -0.511 4.511 12 H 0.054 0.946 13 C 0.062 3.938 14 N -0.891 5.891 15 Si 0.890 3.110 16 H -0.278 1.278 17 H -0.288 1.288 18 H -0.278 1.278 19 C -0.104 4.104 20 C 0.075 3.925 21 N -0.456 5.456 22 C 0.098 3.902 23 C 0.503 3.497 24 O -0.517 6.517 25 N -0.619 5.619 26 C 0.081 3.919 27 C 0.073 3.927 28 H 0.067 0.933 29 H 0.053 0.947 30 H 0.066 0.934 31 H 0.099 0.901 32 H 0.075 0.925 33 H 0.045 0.955 34 H 0.054 0.946 35 H 0.044 0.956 36 H 0.100 0.900 37 H 0.026 0.974 38 H 0.260 0.740 39 H 0.056 0.944 40 H 0.058 0.942 41 H 0.060 0.940 42 H 0.046 0.954 43 H 0.119 0.881 44 H 0.133 0.867 45 H 0.087 0.913 46 H 0.063 0.937 47 H 0.060 0.940 48 H 0.060 0.940 49 H 0.078 0.922 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.270 -22.476 6.409 23.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.071 4.071 3 C -0.088 4.088 4 N -0.126 5.126 5 N -0.155 5.155 6 C 0.019 3.981 7 N -0.195 5.195 8 C -0.058 4.058 9 C -0.140 4.140 10 C 0.028 3.972 11 C -0.549 4.549 12 H 0.073 0.927 13 C -0.139 4.139 14 N -0.530 5.530 15 Si 0.718 3.282 16 H -0.203 1.203 17 H -0.214 1.214 18 H -0.204 1.204 19 C -0.142 4.142 20 C -0.052 4.052 21 N -0.150 5.150 22 C -0.030 4.030 23 C 0.289 3.711 24 O -0.391 6.391 25 N -0.355 5.355 26 C -0.061 4.061 27 C -0.070 4.070 28 H 0.086 0.914 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.118 0.882 32 H 0.094 0.906 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.062 0.938 36 H 0.118 0.882 37 H 0.045 0.955 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.079 0.921 42 H 0.065 0.935 43 H 0.137 0.863 44 H 0.151 0.849 45 H 0.105 0.895 46 H 0.082 0.918 47 H 0.079 0.921 48 H 0.079 0.921 49 H 0.097 0.903 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.740 -22.093 4.987 23.139 hybrid contribution 0.104 0.620 1.561 1.683 sum -4.636 -21.473 6.548 22.923 Atomic orbital electron populations 1.21769 0.93635 1.02362 1.02800 1.19919 0.96347 0.86562 1.04279 1.24639 1.04571 0.97154 0.82477 1.73974 1.15576 0.99128 1.23900 1.74685 1.19521 1.12840 1.08434 1.22663 0.99458 0.87528 0.88454 1.58947 1.05263 1.03939 1.51304 1.22417 0.92599 0.89927 1.00858 1.21725 1.01929 0.94526 0.95803 1.18711 0.90147 0.90972 0.97359 1.21135 1.13555 1.00079 1.20175 0.92750 1.24962 0.95077 0.98146 0.95733 1.69851 1.18874 1.26181 1.38090 0.86692 0.78366 0.81465 0.81644 1.20347 1.21360 1.20382 1.21716 0.99710 0.95013 0.97729 1.22179 0.85190 0.98478 0.99346 1.45788 1.50801 1.11832 1.06560 1.21597 0.96796 1.03466 0.81159 1.20681 0.89987 0.78339 0.82064 1.90777 1.39336 1.54673 1.54311 1.47634 1.15074 1.61818 1.10976 1.21706 0.85988 0.97420 1.01032 1.21904 0.88529 1.02108 0.94498 0.91379 0.92829 0.91513 0.88225 0.90632 0.93705 0.92725 0.93761 0.88217 0.95550 0.92958 0.92562 0.92367 0.92137 0.93530 0.86350 0.84926 0.89470 0.91833 0.92132 0.92116 0.90277 0.90626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.89 37.15 0.37 -0.76 16 2 C -0.03 -0.31 6.15 -27.89 -0.17 -0.48 16 3 C 0.18 2.70 7.32 -154.02 -1.13 1.57 16 4 N -0.29 -5.41 12.18 32.99 0.40 -5.00 16 5 N -0.31 -6.50 12.15 30.31 0.37 -6.13 16 6 C 0.38 7.07 6.44 -318.88 -2.05 5.02 16 7 N -0.47 -9.00 4.67 -174.54 -0.82 -9.82 16 8 C 0.07 1.38 5.39 -3.83 -0.02 1.36 16 9 C -0.10 -2.32 5.12 -26.65 -0.14 -2.46 16 10 C 0.05 1.15 2.16 -91.65 -0.20 0.95 16 11 C -0.51 -13.79 8.56 -34.44 -0.29 -14.08 16 12 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 13 C 0.06 1.68 5.31 -17.82 -0.09 1.59 16 14 N -0.89 -24.99 11.37 55.43 0.63 -24.36 16 15 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 16 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 17 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 19 C -0.10 -2.21 5.32 -26.65 -0.14 -2.36 16 20 C 0.07 1.51 5.34 -3.83 -0.02 1.49 16 21 N -0.46 -6.95 2.30 -115.37 -0.26 -7.22 16 22 C 0.10 1.05 4.93 -5.19 -0.03 1.03 16 23 C 0.50 6.20 7.74 -10.99 -0.09 6.11 16 24 O -0.52 -8.77 15.76 5.56 0.09 -8.68 16 25 N -0.62 -5.50 3.27 -189.52 -0.62 -6.12 16 26 C 0.08 0.64 10.68 59.84 0.64 1.28 16 27 C 0.07 0.36 10.28 59.85 0.62 0.97 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.08 0.63 7.93 -51.93 -0.41 0.22 16 33 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.05 1.01 8.10 -51.93 -0.42 0.59 16 35 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.10 2.54 6.17 -51.93 -0.32 2.22 16 37 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 39 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 42 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 43 H 0.12 0.79 7.86 -51.93 -0.41 0.38 16 44 H 0.13 1.36 7.39 -51.93 -0.38 0.98 16 45 H 0.09 0.90 6.90 -51.93 -0.36 0.54 16 46 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 47 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 48 H 0.06 0.19 8.14 -51.93 -0.42 -0.24 16 49 H 0.08 0.30 8.07 -51.93 -0.42 -0.12 16 50 H 0.08 0.33 6.44 -51.93 -0.33 0.00 16 LS Contribution 402.08 15.07 6.06 6.06 Total: -1.00 -34.98 402.08 -10.44 -45.42 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -8.52 Total: -1.34 kcal Atomic # 6 Polarization: 3.98 SS G_CDS: -2.75 Total: 1.23 kcal Atomic # 7 Polarization: -58.35 SS G_CDS: -0.30 Total: -58.65 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: 0.09 Total: -8.68 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.98 -10.44 -45.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433334618.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.922 kcal (2) G-P(sol) polarization free energy of solvation -34.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds