Wall clock time and date at job start Tue Mar 31 2020 20:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50702 * 109.47019 * 2 1 4 4 N 1.30297 * 126.34496 * 269.95999 * 3 2 1 5 5 N 1.28530 * 110.05190 * 180.02562 * 4 3 2 6 6 C 1.31223 * 109.86104 * 359.74030 * 5 4 3 7 7 N 1.38573 * 126.47576 * 180.25622 * 6 5 4 8 8 C 1.46852 * 110.99898 * 66.70149 * 7 6 5 9 9 C 1.53035 * 109.52596 * 174.15733 * 8 7 6 10 10 C 1.53125 * 109.27243 * 59.18310 * 9 8 7 11 11 C 1.50700 * 109.51965 * 182.43996 * 10 9 8 12 12 H 1.08002 * 120.00309 * 119.68289 * 11 10 9 13 13 C 1.37883 * 120.00084 * 299.68236 * 11 10 9 14 14 N 1.31511 * 119.99979 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99974 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47036 * 60.00321 * 15 13 11 17 17 H 1.48502 * 109.46875 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47280 * 300.00140 * 15 13 11 19 19 C 1.53119 * 109.16250 * 302.34077 * 10 9 8 20 20 C 1.46849 * 110.99983 * 302.49577 * 7 6 5 21 21 N 1.36454 * 107.04863 * 0.40826 * 6 5 4 22 22 C 1.46504 * 127.13227 * 179.87525 * 21 6 5 23 23 C 1.50695 * 109.46845 * 269.55015 * 22 21 6 24 24 O 1.21280 * 120.00408 * 359.97438 * 23 22 21 25 25 N 1.34781 * 120.00052 * 180.02562 * 23 22 21 26 26 C 1.46495 * 120.00194 * 179.97438 * 25 23 22 27 27 C 1.46500 * 119.99752 * 359.72120 * 25 23 22 28 28 H 1.08999 * 109.47210 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47025 * 299.99836 * 1 2 3 30 30 H 1.09001 * 109.47442 * 60.00130 * 1 2 3 31 31 H 1.09003 * 109.47025 * 240.00164 * 2 1 3 32 32 H 1.09001 * 109.47442 * 119.99870 * 2 1 3 33 33 H 1.09004 * 109.46494 * 294.17864 * 8 7 6 34 34 H 1.09002 * 109.45690 * 54.14156 * 8 7 6 35 35 H 1.08997 * 109.50484 * 299.24604 * 9 8 7 36 36 H 1.08996 * 109.50401 * 179.11671 * 9 8 7 37 37 H 1.08995 * 109.52781 * 62.25231 * 10 9 8 38 38 H 0.96997 * 119.99821 * 179.97438 * 14 13 11 39 39 H 1.09004 * 109.50479 * 297.71848 * 19 10 9 40 40 H 1.08994 * 109.50624 * 177.59756 * 19 10 9 41 41 H 1.08993 * 109.46009 * 305.84778 * 20 7 6 42 42 H 1.08997 * 109.46518 * 65.82284 * 20 7 6 43 43 H 1.08999 * 109.47096 * 149.54798 * 22 21 6 44 44 H 1.08998 * 109.47386 * 29.54594 * 22 21 6 45 45 H 1.08996 * 109.47388 * 359.97438 * 26 25 23 46 46 H 1.09003 * 109.47215 * 120.00124 * 26 25 23 47 47 H 1.09002 * 109.47215 * 239.99689 * 26 25 23 48 48 H 1.09000 * 109.47422 * 90.00079 * 27 25 23 49 49 H 1.08997 * 109.47326 * 210.00439 * 27 25 23 50 50 H 1.09003 * 109.47075 * 330.00166 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 7 2.2903 2.1486 -1.0495 5 7 2.7018 3.3117 -0.6889 6 6 2.7232 3.3907 0.6208 7 7 3.1047 4.4898 1.3736 8 6 2.1606 5.6009 1.1986 9 6 2.5294 6.7404 2.1512 10 6 3.9568 7.2071 1.8522 11 6 4.3474 8.2886 2.8263 12 1 5.1936 8.1450 3.4819 13 6 3.6246 9.4615 2.8806 14 7 2.5945 9.6366 2.0819 15 14 4.1084 10.8017 4.0885 16 1 5.4956 11.2482 3.8030 17 1 3.1800 11.9523 3.9491 18 1 4.0344 10.2703 5.4732 19 6 4.9138 6.0203 1.9944 20 6 4.4758 4.9016 1.0463 21 7 2.3022 2.1850 1.1013 22 6 2.1622 1.7928 2.5059 23 6 3.4524 1.1810 2.9875 24 8 4.3958 1.0818 2.2319 25 7 3.5576 0.7430 4.2578 26 6 4.8117 0.1477 4.7259 27 6 2.4197 0.8673 5.1721 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.2068 5.9582 0.1698 34 1 1.1499 5.2566 1.4182 35 1 2.4700 6.3876 3.1808 36 1 1.8379 7.5710 2.0099 37 1 4.0075 7.5960 0.8352 38 1 2.0858 10.4616 2.1204 39 1 4.8919 5.6562 3.0217 40 1 5.9257 6.3364 1.7413 41 1 5.1467 4.0496 1.1556 42 1 4.5111 5.2621 0.0183 43 1 1.3568 1.0645 2.6012 44 1 1.9302 2.6718 3.1072 45 1 5.5378 0.1442 3.9131 46 1 5.2019 0.7313 5.5597 47 1 4.6282 -0.8757 5.0532 48 1 1.8019 -0.0284 5.1072 49 1 2.7845 0.9839 6.1925 50 1 1.8259 1.7389 4.8967 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001433334618.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:11 Heat of formation + Delta-G solvation = 32.643656 kcal Electronic energy + Delta-G solvation = -30688.871296 eV Core-core repulsion = 26751.958943 eV Total energy + Delta-G solvation = -3936.912353 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -44.13753 -40.94396 -39.97020 -36.71185 -36.13838 -36.04168 -34.60135 -33.12704 -31.70179 -30.50072 -29.85791 -28.41760 -27.60418 -26.55184 -25.00719 -24.43880 -23.92900 -22.35182 -21.96328 -20.52423 -20.32812 -18.66597 -18.50002 -18.33660 -17.61600 -17.01414 -16.98085 -16.51999 -16.44677 -15.90001 -15.62671 -15.18183 -14.97707 -14.64644 -14.62310 -14.55036 -14.38446 -14.25010 -13.62584 -13.45158 -13.36376 -13.29490 -13.24262 -13.04157 -12.95576 -12.78752 -12.72403 -12.47765 -12.40714 -12.22336 -12.12830 -12.04259 -11.91044 -11.66206 -11.41898 -10.95593 -10.81755 -10.76906 -10.39902 -10.08163 -9.86489 -9.76510 -8.06521 -6.20001 0.53768 1.08748 1.35560 1.44674 1.45968 1.53449 1.71178 1.97295 2.45892 2.64520 3.20947 3.25826 3.31988 3.51961 3.83003 3.87316 3.97613 4.06903 4.18908 4.27630 4.28610 4.33774 4.41882 4.45821 4.49694 4.52949 4.53122 4.63003 4.65431 4.77157 4.81763 4.85218 4.91545 4.96301 4.96460 4.98161 5.10081 5.16096 5.17290 5.31239 5.38797 5.45307 5.55932 5.61988 5.71562 5.97381 6.11820 6.13662 6.24933 6.38272 6.89743 6.94313 7.47947 7.62360 8.98541 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.012671 B = 0.003514 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2209.198636 B = 7967.078348 C = 9213.813973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.031 4.031 3 C 0.200 3.800 4 N -0.330 5.330 5 N -0.352 5.352 6 C 0.355 3.645 7 N -0.454 5.454 8 C 0.083 3.917 9 C -0.087 4.087 10 C 0.044 3.956 11 C -0.531 4.531 12 H 0.054 0.946 13 C 0.016 3.984 14 N -0.917 5.917 15 Si 0.954 3.046 16 H -0.276 1.276 17 H -0.286 1.286 18 H -0.268 1.268 19 C -0.090 4.090 20 C 0.087 3.913 21 N -0.450 5.450 22 C 0.091 3.909 23 C 0.498 3.502 24 O -0.576 6.576 25 N -0.612 5.612 26 C 0.078 3.922 27 C 0.062 3.938 28 H 0.098 0.902 29 H 0.063 0.937 30 H 0.047 0.953 31 H 0.103 0.897 32 H 0.100 0.900 33 H 0.020 0.980 34 H 0.077 0.923 35 H 0.048 0.952 36 H 0.073 0.927 37 H -0.012 1.012 38 H 0.261 0.739 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.062 0.938 42 H 0.027 0.973 43 H 0.168 0.832 44 H 0.142 0.858 45 H 0.057 0.943 46 H 0.074 0.926 47 H 0.088 0.912 48 H 0.088 0.912 49 H 0.092 0.908 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.686 -24.809 9.251 27.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.071 4.071 3 C -0.069 4.069 4 N -0.170 5.170 5 N -0.195 5.195 6 C -0.003 4.003 7 N -0.180 5.180 8 C -0.044 4.044 9 C -0.125 4.125 10 C 0.025 3.975 11 C -0.569 4.569 12 H 0.073 0.927 13 C -0.183 4.183 14 N -0.556 5.556 15 Si 0.780 3.220 16 H -0.201 1.201 17 H -0.211 1.211 18 H -0.193 1.193 19 C -0.128 4.128 20 C -0.041 4.041 21 N -0.143 5.143 22 C -0.034 4.034 23 C 0.285 3.715 24 O -0.455 6.455 25 N -0.345 5.345 26 C -0.065 4.065 27 C -0.079 4.079 28 H 0.117 0.883 29 H 0.082 0.918 30 H 0.066 0.934 31 H 0.121 0.879 32 H 0.118 0.882 33 H 0.038 0.962 34 H 0.095 0.905 35 H 0.067 0.933 36 H 0.091 0.909 37 H 0.006 0.994 38 H 0.070 0.930 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.046 0.954 43 H 0.186 0.814 44 H 0.159 0.841 45 H 0.076 0.924 46 H 0.093 0.907 47 H 0.106 0.894 48 H 0.107 0.893 49 H 0.111 0.889 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.179 -24.459 7.896 26.434 hybrid contribution 0.533 1.228 0.716 1.518 sum -5.646 -23.231 8.612 25.411 Atomic orbital electron populations 1.21752 0.91466 1.04276 1.02406 1.20253 0.97968 0.83198 1.05676 1.25669 1.01384 0.98307 0.81510 1.73886 1.17958 0.99250 1.25861 1.74548 1.20588 1.14413 1.09936 1.22513 1.01016 0.88442 0.88291 1.58876 1.04240 1.03747 1.51125 1.22158 0.93969 0.89686 0.98600 1.21440 1.00047 0.94530 0.96509 1.18667 0.92166 0.91857 0.94761 1.21454 1.13723 1.01131 1.20625 0.92740 1.25713 0.94987 1.00271 0.97341 1.69997 1.19656 1.26658 1.39302 0.85680 0.77904 0.78649 0.79803 1.20136 1.21111 1.19258 1.21540 0.99023 0.94035 0.98239 1.21964 0.86262 0.97948 0.97892 1.45925 1.49553 1.10385 1.08431 1.22058 0.97700 1.05065 0.78603 1.20924 0.89660 0.78184 0.82781 1.90763 1.41160 1.57473 1.56138 1.47800 1.16321 1.60072 1.10332 1.21799 0.85278 0.99245 1.00143 1.22250 0.87560 1.03853 0.94224 0.88281 0.91815 0.93370 0.87852 0.88201 0.96176 0.90501 0.93288 0.90879 0.99381 0.92994 0.91922 0.92166 0.91924 0.95445 0.81428 0.84070 0.92438 0.90696 0.89366 0.89318 0.88924 0.89897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 9.89 71.98 0.71 -0.95 16 2 C -0.03 -0.53 6.15 29.85 0.18 -0.35 16 3 C 0.20 5.79 7.32 137.64 1.01 6.80 16 4 N -0.33 -12.68 12.18 -49.54 -0.60 -13.28 16 5 N -0.35 -15.15 12.15 -58.01 -0.70 -15.86 16 6 C 0.36 13.49 6.44 260.11 1.68 15.17 16 7 N -0.45 -17.66 4.67 -706.13 -3.30 -20.96 16 8 C 0.08 3.42 5.39 86.32 0.47 3.88 16 9 C -0.09 -4.06 5.12 30.65 0.16 -3.90 16 10 C 0.04 2.24 2.16 -11.46 -0.02 2.22 16 11 C -0.53 -29.08 8.56 25.60 0.22 -28.86 16 12 H 0.05 2.91 7.74 -2.91 -0.02 2.89 16 13 C 0.02 0.85 5.31 84.66 0.45 1.30 16 14 N -0.92 -52.49 11.37 21.45 0.24 -52.25 16 15 Si 0.95 43.05 29.54 68.60 2.03 45.08 16 16 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 17 H -0.29 -12.69 7.11 99.48 0.71 -11.99 16 18 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 19 C -0.09 -3.94 5.32 30.65 0.16 -3.78 16 20 C 0.09 3.62 5.34 86.33 0.46 4.09 16 21 N -0.45 -13.14 2.30 -518.91 -1.19 -14.33 16 22 C 0.09 1.70 4.93 85.63 0.42 2.12 16 23 C 0.50 11.27 7.74 87.65 0.68 11.95 16 24 O -0.58 -19.42 15.76 -3.03 -0.05 -19.47 16 25 N -0.61 -9.09 3.27 -871.91 -2.85 -11.95 16 26 C 0.08 1.07 10.68 127.77 1.37 2.44 16 27 C 0.06 0.34 10.28 127.77 1.31 1.65 16 28 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.10 1.25 7.93 -2.39 -0.02 1.23 16 33 H 0.02 0.92 8.14 -2.38 -0.02 0.90 16 34 H 0.08 2.83 8.10 -2.39 -0.02 2.81 16 35 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 36 H 0.07 3.84 6.17 -2.39 -0.01 3.82 16 37 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 38 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 39 H 0.06 2.65 8.14 -2.38 -0.02 2.63 16 40 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 41 H 0.06 2.60 8.10 -2.39 -0.02 2.58 16 42 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.17 1.38 7.86 -2.39 -0.02 1.37 16 44 H 0.14 2.45 7.39 -2.39 -0.02 2.43 16 45 H 0.06 1.17 6.90 -2.39 -0.02 1.15 16 46 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 47 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 48 H 0.09 0.06 8.14 -2.39 -0.02 0.04 16 49 H 0.09 0.31 8.07 -2.39 -0.02 0.29 16 50 H 0.08 0.37 6.44 -2.39 -0.02 0.35 16 Total: -1.00 -80.93 402.08 3.73 -77.19 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: 0.92 Total: 12.04 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: 9.25 Total: 13.78 kcal Atomic # 7 Polarization: -120.22 SS G_CDS: -8.41 Total: -128.62 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: -0.05 Total: -19.47 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -80.93 3.73 -77.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433334618.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.838 kcal (2) G-P(sol) polarization free energy of solvation -80.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds