Wall clock time and date at job start Tue Mar 31 2020 19:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30296 * 126.34895 * 2 1 4 4 N 1.28527 * 110.05272 * 179.97438 * 3 2 1 5 5 C 1.31213 * 109.86377 * 0.02562 * 4 3 2 6 6 N 1.38583 * 126.47625 * 179.97438 * 5 4 3 7 7 C 1.46900 * 110.99805 * 104.57004 * 6 5 4 8 8 C 1.46899 * 110.99755 * 340.61869 * 6 5 4 9 9 H 1.09001 * 109.46998 * 59.99951 * 8 6 5 10 10 C 1.52997 * 109.47019 * 299.99479 * 8 6 5 11 11 C 1.50706 * 109.46980 * 180.02562 * 8 6 5 12 12 H 1.08004 * 119.99866 * 359.97438 * 11 8 6 13 13 C 1.37872 * 119.99792 * 180.02562 * 11 8 6 14 14 N 1.31513 * 120.00248 * 359.97438 * 13 11 8 15 15 Si 1.86798 * 119.99842 * 179.97438 * 13 11 8 16 16 H 1.48503 * 109.47561 * 59.99843 * 15 13 11 17 17 H 1.48509 * 109.47183 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47016 * 299.99650 * 15 13 11 19 19 N 1.36457 * 107.05427 * 359.73581 * 5 4 3 20 20 C 1.46491 * 127.14128 * 180.26633 * 19 5 4 21 21 C 1.52998 * 109.47438 * 264.39152 * 20 19 5 22 22 H 1.08999 * 110.21753 * 304.52458 * 21 20 19 23 23 N 1.46759 * 110.24542 * 66.45013 * 21 20 19 24 24 C 1.34421 * 111.30180 * 101.98481 * 23 21 20 25 25 O 1.21280 * 124.94327 * 180.38275 * 24 23 21 26 26 C 1.51281 * 110.11349 * 0.41040 * 24 23 21 27 27 C 1.54483 * 110.24846 * 182.49969 * 21 20 19 28 28 C 1.52994 * 110.96986 * 24.53646 * 27 21 20 29 29 C 1.52997 * 110.96612 * 148.29547 * 27 21 20 30 30 H 1.08999 * 109.46975 * 90.02929 * 1 2 3 31 31 H 1.08999 * 109.47092 * 330.02687 * 1 2 3 32 32 H 1.09001 * 109.47354 * 210.02994 * 1 2 3 33 33 H 1.08997 * 109.47326 * 61.79077 * 7 6 5 34 34 H 1.09004 * 109.46784 * 181.78432 * 7 6 5 35 35 H 1.08994 * 109.47375 * 301.78139 * 7 6 5 36 36 H 1.09006 * 109.47168 * 60.00528 * 10 8 6 37 37 H 1.09006 * 109.47427 * 180.02562 * 10 8 6 38 38 H 1.08992 * 109.47771 * 300.00332 * 10 8 6 39 39 H 0.97001 * 120.00174 * 180.02562 * 14 13 11 40 40 H 1.08999 * 109.47298 * 24.39274 * 20 19 5 41 41 H 1.09004 * 109.47633 * 144.39082 * 20 19 5 42 42 H 0.97000 * 124.35222 * 282.00510 * 23 21 20 43 43 H 1.09008 * 110.48686 * 134.92741 * 26 24 23 44 44 H 1.09002 * 110.48503 * 257.43527 * 26 24 23 45 45 H 1.09004 * 109.47520 * 59.99377 * 28 27 21 46 46 H 1.09001 * 109.47354 * 180.02562 * 28 27 21 47 47 H 1.09001 * 109.47136 * 299.99785 * 28 27 21 48 48 H 1.09002 * 109.47148 * 60.00337 * 29 27 21 49 49 H 1.09002 * 109.47315 * 179.97438 * 29 27 21 50 50 H 1.09002 * 109.47591 * 300.00209 * 29 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2792 1.0494 0.0000 4 7 3.5129 0.6888 0.0005 5 6 3.5945 -0.6208 0.0004 6 7 4.7580 -1.3737 0.0003 7 6 5.0124 -1.9496 1.3276 8 6 5.9028 -0.5735 -0.4547 9 1 6.0380 0.2787 0.2114 10 6 5.6422 -0.0732 -1.8768 11 6 7.1469 -1.4240 -0.4420 12 1 7.0925 -2.4557 -0.1270 13 6 8.3545 -0.8848 -0.8315 14 7 8.4207 0.3716 -1.2145 15 14 9.8967 -1.9388 -0.8151 16 1 9.7127 -3.0996 -1.7228 17 1 11.0540 -1.1298 -1.2752 18 1 10.1493 -2.4248 0.5651 19 7 2.3174 -1.1014 0.0057 20 6 1.9009 -2.5058 0.0130 21 6 1.6171 -2.9612 -1.4198 22 1 0.8803 -2.3060 -1.8844 23 7 2.8568 -2.9685 -2.2053 24 6 3.3388 -4.2155 -2.3454 25 8 4.3537 -4.5049 -2.9429 26 6 2.4305 -5.2055 -1.6499 27 6 1.1160 -4.4224 -1.4271 28 6 0.4804 -4.7900 -0.0848 29 6 0.1358 -4.6593 -2.5777 30 1 -0.3633 -0.0005 -1.0277 31 1 -0.3633 0.8902 0.5134 32 1 -0.3634 -0.8897 0.5143 33 1 4.1947 -2.6182 1.5964 34 1 5.9476 -2.5092 1.3076 35 1 5.0839 -1.1487 2.0635 36 1 4.7423 0.5419 -1.8865 37 1 6.4919 0.5202 -2.2147 38 1 5.5070 -0.9253 -2.5428 39 1 9.2703 0.7509 -1.4889 40 1 2.6959 -3.1184 0.4382 41 1 0.9980 -2.6140 0.6141 42 1 3.2749 -2.1754 -2.5755 43 1 2.2545 -6.0735 -2.2854 44 1 2.8602 -5.5128 -0.6964 45 1 -0.3658 -4.1309 0.1092 46 1 0.1365 -5.8238 -0.1166 47 1 1.2183 -4.6773 0.7095 48 1 0.6327 -4.4552 -3.5262 49 1 -0.2014 -5.6957 -2.5603 50 1 -0.7220 -3.9959 -2.4668 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434606731.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:40:44 Heat of formation + Delta-G solvation = 59.257210 kcal Electronic energy + Delta-G solvation = -31897.485289 eV Core-core repulsion = 27961.726986 eV Total energy + Delta-G solvation = -3935.758303 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.61053 -40.79832 -37.34248 -37.10837 -34.74010 -33.38588 -32.92794 -31.41693 -29.60237 -29.17209 -28.25178 -27.51266 -27.12814 -25.25369 -24.47583 -23.87751 -21.88240 -20.76914 -20.24403 -19.49312 -19.43604 -17.25972 -16.96217 -16.31602 -16.11467 -15.49561 -15.34718 -15.07897 -14.84506 -14.47862 -14.33691 -14.00518 -13.83961 -13.53571 -13.43006 -13.14565 -13.07207 -12.85498 -12.74856 -12.66082 -12.38397 -12.05749 -12.01148 -11.81483 -11.66480 -11.38577 -11.17520 -11.04841 -10.89777 -10.89388 -10.65246 -10.33653 -10.22469 -10.04064 -10.02156 -9.83552 -9.63924 -9.21290 -8.93508 -8.60915 -8.40769 -7.45034 -6.00144 -4.07020 2.14392 2.55588 2.80499 3.34271 3.35048 3.39138 3.40820 3.42776 3.92435 4.13325 4.20970 4.36324 4.52929 4.57720 4.61543 4.64284 4.80023 4.88080 4.94705 5.04778 5.19115 5.27000 5.32109 5.34796 5.38936 5.40879 5.46841 5.52360 5.60566 5.66475 5.69716 5.73448 5.87313 5.89709 6.06655 6.17146 6.32944 6.50098 6.87638 6.91772 6.98361 7.12145 7.18734 7.24830 7.44669 7.69810 7.77451 7.98220 8.27492 8.44292 8.47574 8.93962 9.31686 9.57557 11.06180 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.011683 B = 0.004931 C = 0.003872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2396.038769 B = 5676.942555 C = 7229.643923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.143 3.857 3 N -0.287 5.287 4 N -0.315 5.315 5 C 0.386 3.614 6 N -0.457 5.457 7 C 0.041 3.959 8 C 0.232 3.768 9 H 0.023 0.977 10 C -0.132 4.132 11 C -0.513 4.513 12 H 0.063 0.937 13 C 0.065 3.935 14 N -0.885 5.885 15 Si 0.898 3.102 16 H -0.275 1.275 17 H -0.287 1.287 18 H -0.277 1.277 19 N -0.484 5.484 20 C 0.098 3.902 21 C 0.128 3.872 22 H 0.091 0.909 23 N -0.713 5.713 24 C 0.522 3.478 25 O -0.521 6.521 26 C -0.150 4.150 27 C -0.067 4.067 28 C -0.144 4.144 29 C -0.137 4.137 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.070 0.930 33 H 0.042 0.958 34 H 0.098 0.902 35 H 0.028 0.972 36 H 0.020 0.980 37 H 0.089 0.911 38 H 0.025 0.975 39 H 0.263 0.737 40 H 0.103 0.897 41 H 0.101 0.899 42 H 0.416 0.584 43 H 0.101 0.899 44 H 0.105 0.895 45 H 0.065 0.935 46 H 0.068 0.932 47 H 0.064 0.936 48 H 0.060 0.940 49 H 0.065 0.935 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.973 -10.890 2.915 24.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.124 4.124 3 N -0.127 5.127 4 N -0.159 5.159 5 C 0.031 3.969 6 N -0.182 5.182 7 C -0.106 4.106 8 C 0.128 3.872 9 H 0.041 0.959 10 C -0.191 4.191 11 C -0.552 4.552 12 H 0.081 0.919 13 C -0.137 4.137 14 N -0.523 5.523 15 Si 0.726 3.274 16 H -0.201 1.201 17 H -0.213 1.213 18 H -0.203 1.203 19 N -0.181 5.181 20 C -0.026 4.026 21 C 0.021 3.979 22 H 0.109 0.891 23 N -0.369 5.369 24 C 0.308 3.692 25 O -0.396 6.396 26 C -0.190 4.190 27 C -0.068 4.068 28 C -0.202 4.202 29 C -0.194 4.194 30 H 0.096 0.904 31 H 0.108 0.892 32 H 0.089 0.911 33 H 0.060 0.940 34 H 0.116 0.884 35 H 0.047 0.953 36 H 0.039 0.961 37 H 0.108 0.892 38 H 0.044 0.956 39 H 0.073 0.927 40 H 0.121 0.879 41 H 0.119 0.881 42 H 0.256 0.744 43 H 0.119 0.881 44 H 0.123 0.877 45 H 0.084 0.916 46 H 0.087 0.913 47 H 0.083 0.917 48 H 0.079 0.921 49 H 0.084 0.916 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -20.913 -9.941 2.243 23.264 hybrid contribution 0.812 -0.930 0.314 1.275 sum -20.100 -10.871 2.558 22.994 Atomic orbital electron populations 1.20058 0.84496 1.03717 1.03231 1.24567 0.96165 0.82929 1.08780 1.73975 0.97091 1.24270 1.17342 1.74842 1.10571 1.07867 1.22619 1.23144 0.85195 0.89096 0.99508 1.59176 1.00810 1.33586 1.24613 1.22313 1.02292 0.98628 0.87374 1.19304 0.83386 0.91091 0.93421 0.95903 1.21816 1.00595 0.99072 0.97578 1.20989 0.91205 0.97450 1.45558 0.91898 1.24868 0.98903 0.95013 0.94958 1.69905 1.25871 1.12528 1.43970 0.86557 0.82161 0.80291 0.78403 1.20094 1.21264 1.20308 1.46249 1.06377 1.07375 1.58062 1.22476 1.02563 0.79544 0.98055 1.22000 0.87550 0.97386 0.91011 0.89065 1.46162 1.26175 1.09835 1.54699 1.20664 0.84932 0.84098 0.79548 1.90803 1.24655 1.81346 1.42815 1.22553 0.94484 0.98817 1.03170 1.21482 0.95219 0.92565 0.97584 1.21946 1.00887 1.02470 0.94855 1.21816 0.98220 1.02354 0.97058 0.90370 0.89224 0.91139 0.93963 0.88397 0.95312 0.96120 0.89248 0.95588 0.92745 0.87913 0.88069 0.74444 0.88052 0.87697 0.91634 0.91330 0.91715 0.92131 0.91552 0.91818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.48 10.26 36.00 0.37 -0.11 16 2 C 0.14 2.11 8.07 -154.01 -1.24 0.86 16 3 N -0.29 -5.65 12.18 32.99 0.40 -5.25 16 4 N -0.32 -7.10 9.94 30.32 0.30 -6.80 16 5 C 0.39 7.64 6.09 -318.87 -1.94 5.70 16 6 N -0.46 -9.67 4.62 -176.08 -0.81 -10.49 16 7 C 0.04 0.78 9.16 60.06 0.55 1.33 16 8 C 0.23 6.00 1.73 -68.86 -0.12 5.88 16 9 H 0.02 0.68 7.92 -51.93 -0.41 0.27 16 10 C -0.13 -3.46 8.79 37.16 0.33 -3.14 16 11 C -0.51 -14.07 7.86 -34.44 -0.27 -14.34 16 12 H 0.06 1.70 6.42 -52.48 -0.34 1.36 16 13 C 0.07 1.82 5.30 -17.82 -0.09 1.73 16 14 N -0.88 -25.81 11.32 55.43 0.63 -25.18 16 15 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 16 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 17 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 N -0.48 -7.14 2.77 -114.09 -0.32 -7.45 16 20 C 0.10 1.00 4.40 -4.05 -0.02 0.98 16 21 C 0.13 1.21 3.22 -67.01 -0.22 0.99 16 22 H 0.09 0.78 7.91 -51.93 -0.41 0.37 16 23 N -0.71 -9.93 5.84 -52.77 -0.31 -10.24 16 24 C 0.52 7.92 8.43 -10.86 -0.09 7.83 16 25 O -0.52 -10.80 18.03 5.56 0.10 -10.70 16 26 C -0.15 -1.43 5.96 -26.74 -0.16 -1.59 16 27 C -0.07 -0.46 0.92 -152.88 -0.14 -0.60 16 28 C -0.14 -0.63 7.30 37.15 0.27 -0.36 16 29 C -0.14 -0.79 8.49 37.16 0.32 -0.48 16 30 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.41 7.39 -51.93 -0.38 0.03 16 33 H 0.04 0.64 6.54 -51.93 -0.34 0.30 16 34 H 0.10 1.93 6.05 -51.93 -0.31 1.62 16 35 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.02 0.51 6.18 -51.93 -0.32 0.19 16 37 H 0.09 2.56 6.07 -51.93 -0.32 2.25 16 38 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 40 H 0.10 1.16 6.10 -51.93 -0.32 0.84 16 41 H 0.10 0.67 5.83 -51.93 -0.30 0.37 16 42 H 0.42 7.01 8.96 -40.82 -0.37 6.64 16 43 H 0.10 0.86 7.91 -51.92 -0.41 0.45 16 44 H 0.10 0.92 7.84 -51.93 -0.41 0.51 16 45 H 0.06 0.21 7.76 -51.93 -0.40 -0.20 16 46 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 47 H 0.06 0.30 6.69 -51.93 -0.35 -0.05 16 48 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 49 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 50 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 LS Contribution 390.55 15.07 5.89 5.89 Total: -1.00 -35.91 390.55 -9.51 -45.41 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -7.90 Total: 3.38 kcal Atomic # 6 Polarization: 7.14 SS G_CDS: -2.46 Total: 4.68 kcal Atomic # 7 Polarization: -65.30 SS G_CDS: -0.11 Total: -65.41 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.10 Total: -10.70 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -35.91 -9.51 -45.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434606731.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.671 kcal (2) G-P(sol) polarization free energy of solvation -35.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds