Wall clock time and date at job start Tue Mar 31 2020 19:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30296 * 126.34895 * 2 1 4 4 N 1.28527 * 110.05272 * 179.97438 * 3 2 1 5 5 C 1.31213 * 109.86377 * 0.02562 * 4 3 2 6 6 N 1.38583 * 126.47625 * 179.97438 * 5 4 3 7 7 C 1.46900 * 110.99805 * 104.57004 * 6 5 4 8 8 C 1.46899 * 110.99755 * 340.61869 * 6 5 4 9 9 H 1.09001 * 109.46998 * 59.99951 * 8 6 5 10 10 C 1.52997 * 109.47019 * 299.99479 * 8 6 5 11 11 C 1.50706 * 109.46980 * 180.02562 * 8 6 5 12 12 H 1.08004 * 119.99866 * 359.97438 * 11 8 6 13 13 C 1.37872 * 119.99792 * 180.02562 * 11 8 6 14 14 N 1.31513 * 120.00248 * 359.97438 * 13 11 8 15 15 Si 1.86798 * 119.99842 * 179.97438 * 13 11 8 16 16 H 1.48503 * 109.47561 * 59.99843 * 15 13 11 17 17 H 1.48509 * 109.47183 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47016 * 299.99650 * 15 13 11 19 19 N 1.36457 * 107.05427 * 359.73581 * 5 4 3 20 20 C 1.46491 * 127.14128 * 180.26633 * 19 5 4 21 21 C 1.52998 * 109.47438 * 264.39152 * 20 19 5 22 22 H 1.08999 * 110.21753 * 304.52458 * 21 20 19 23 23 N 1.46759 * 110.24542 * 66.45013 * 21 20 19 24 24 C 1.34421 * 111.30180 * 101.98481 * 23 21 20 25 25 O 1.21280 * 124.94327 * 180.38275 * 24 23 21 26 26 C 1.51281 * 110.11349 * 0.41040 * 24 23 21 27 27 C 1.54483 * 110.24846 * 182.49969 * 21 20 19 28 28 C 1.52994 * 110.96986 * 24.53646 * 27 21 20 29 29 C 1.52997 * 110.96612 * 148.29547 * 27 21 20 30 30 H 1.08999 * 109.46975 * 90.02929 * 1 2 3 31 31 H 1.08999 * 109.47092 * 330.02687 * 1 2 3 32 32 H 1.09001 * 109.47354 * 210.02994 * 1 2 3 33 33 H 1.08997 * 109.47326 * 61.79077 * 7 6 5 34 34 H 1.09004 * 109.46784 * 181.78432 * 7 6 5 35 35 H 1.08994 * 109.47375 * 301.78139 * 7 6 5 36 36 H 1.09006 * 109.47168 * 60.00528 * 10 8 6 37 37 H 1.09006 * 109.47427 * 180.02562 * 10 8 6 38 38 H 1.08992 * 109.47771 * 300.00332 * 10 8 6 39 39 H 0.97001 * 120.00174 * 180.02562 * 14 13 11 40 40 H 1.08999 * 109.47298 * 24.39274 * 20 19 5 41 41 H 1.09004 * 109.47633 * 144.39082 * 20 19 5 42 42 H 0.97000 * 124.35222 * 282.00510 * 23 21 20 43 43 H 1.09008 * 110.48686 * 134.92741 * 26 24 23 44 44 H 1.09002 * 110.48503 * 257.43527 * 26 24 23 45 45 H 1.09004 * 109.47520 * 59.99377 * 28 27 21 46 46 H 1.09001 * 109.47354 * 180.02562 * 28 27 21 47 47 H 1.09001 * 109.47136 * 299.99785 * 28 27 21 48 48 H 1.09002 * 109.47148 * 60.00337 * 29 27 21 49 49 H 1.09002 * 109.47315 * 179.97438 * 29 27 21 50 50 H 1.09002 * 109.47591 * 300.00209 * 29 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2792 1.0494 0.0000 4 7 3.5129 0.6888 0.0005 5 6 3.5945 -0.6208 0.0004 6 7 4.7580 -1.3737 0.0003 7 6 5.0124 -1.9496 1.3276 8 6 5.9028 -0.5735 -0.4547 9 1 6.0380 0.2787 0.2114 10 6 5.6422 -0.0732 -1.8768 11 6 7.1469 -1.4240 -0.4420 12 1 7.0925 -2.4557 -0.1270 13 6 8.3545 -0.8848 -0.8315 14 7 8.4207 0.3716 -1.2145 15 14 9.8967 -1.9388 -0.8151 16 1 9.7127 -3.0996 -1.7228 17 1 11.0540 -1.1298 -1.2752 18 1 10.1493 -2.4248 0.5651 19 7 2.3174 -1.1014 0.0057 20 6 1.9009 -2.5058 0.0130 21 6 1.6171 -2.9612 -1.4198 22 1 0.8803 -2.3060 -1.8844 23 7 2.8568 -2.9685 -2.2053 24 6 3.3388 -4.2155 -2.3454 25 8 4.3537 -4.5049 -2.9429 26 6 2.4305 -5.2055 -1.6499 27 6 1.1160 -4.4224 -1.4271 28 6 0.4804 -4.7900 -0.0848 29 6 0.1358 -4.6593 -2.5777 30 1 -0.3633 -0.0005 -1.0277 31 1 -0.3633 0.8902 0.5134 32 1 -0.3634 -0.8897 0.5143 33 1 4.1947 -2.6182 1.5964 34 1 5.9476 -2.5092 1.3076 35 1 5.0839 -1.1487 2.0635 36 1 4.7423 0.5419 -1.8865 37 1 6.4919 0.5202 -2.2147 38 1 5.5070 -0.9253 -2.5428 39 1 9.2703 0.7509 -1.4889 40 1 2.6959 -3.1184 0.4382 41 1 0.9980 -2.6140 0.6141 42 1 3.2749 -2.1754 -2.5755 43 1 2.2545 -6.0735 -2.2854 44 1 2.8602 -5.5128 -0.6964 45 1 -0.3658 -4.1309 0.1092 46 1 0.1365 -5.8238 -0.1166 47 1 1.2183 -4.6773 0.7095 48 1 0.6327 -4.4552 -3.5262 49 1 -0.2014 -5.6957 -2.5603 50 1 -0.7220 -3.9959 -2.4668 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434606731.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:40:43 Heat of formation + Delta-G solvation = 33.855016 kcal Electronic energy + Delta-G solvation = -31898.586811 eV Core-core repulsion = 27961.726986 eV Total energy + Delta-G solvation = -3936.859825 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.93607 -41.72744 -38.85820 -38.48369 -35.86419 -34.92695 -34.29212 -32.58894 -31.29054 -30.44128 -28.99210 -28.65226 -27.71854 -27.16098 -26.10018 -24.86707 -23.61646 -21.87813 -21.30164 -21.13023 -20.16622 -18.55819 -18.29316 -17.80738 -17.58967 -17.01121 -16.49491 -16.42395 -16.20517 -15.70503 -15.39333 -15.34584 -14.93723 -14.63400 -14.48830 -14.25367 -14.16798 -13.97976 -13.74061 -13.46646 -13.37336 -13.26264 -13.06072 -12.87194 -12.75751 -12.56265 -12.53030 -12.40967 -12.26428 -12.20031 -12.14345 -12.07473 -11.96762 -11.65250 -11.42784 -11.21879 -11.07720 -10.78471 -10.60799 -10.28590 -10.00798 -9.09749 -8.16933 -6.30965 0.87703 1.34466 1.39575 1.42246 1.49224 1.66622 1.95431 2.37336 2.39267 2.97043 3.13939 3.29945 3.38700 3.54695 3.63219 3.79772 3.87374 4.05910 4.11640 4.21633 4.27866 4.34991 4.45361 4.51505 4.71091 4.74765 4.75482 4.77589 4.79409 4.80419 4.92994 4.95065 5.00388 5.04738 5.06529 5.12295 5.14438 5.18041 5.22113 5.39004 5.41192 5.52952 5.59099 5.62486 5.81535 5.93109 6.02051 6.10775 6.15347 6.63287 6.78240 7.26588 7.37332 7.92959 8.89509 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.011683 B = 0.004931 C = 0.003872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2396.038769 B = 5676.942555 C = 7229.643923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.176 3.824 3 N -0.342 5.342 4 N -0.371 5.371 5 C 0.366 3.634 6 N -0.452 5.452 7 C 0.043 3.957 8 C 0.247 3.753 9 H -0.024 1.024 10 C -0.109 4.109 11 C -0.524 4.524 12 H 0.065 0.935 13 C 0.014 3.986 14 N -0.917 5.917 15 Si 0.964 3.036 16 H -0.278 1.278 17 H -0.283 1.283 18 H -0.263 1.263 19 N -0.471 5.471 20 C 0.090 3.910 21 C 0.124 3.876 22 H 0.109 0.891 23 N -0.720 5.720 24 C 0.507 3.493 25 O -0.594 6.594 26 C -0.142 4.142 27 C -0.047 4.047 28 C -0.145 4.145 29 C -0.137 4.137 30 H 0.101 0.899 31 H 0.095 0.905 32 H 0.115 0.885 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.013 0.987 36 H 0.021 0.979 37 H 0.060 0.940 38 H 0.018 0.982 39 H 0.263 0.737 40 H 0.095 0.905 41 H 0.155 0.845 42 H 0.395 0.605 43 H 0.113 0.887 44 H 0.117 0.883 45 H 0.091 0.909 46 H 0.082 0.918 47 H 0.065 0.935 48 H 0.035 0.965 49 H 0.082 0.918 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.152 -13.602 4.463 29.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.093 4.093 3 N -0.181 5.181 4 N -0.214 5.214 5 C 0.008 3.992 6 N -0.177 5.177 7 C -0.104 4.104 8 C 0.141 3.859 9 H -0.006 1.006 10 C -0.168 4.168 11 C -0.562 4.562 12 H 0.083 0.917 13 C -0.185 4.185 14 N -0.556 5.556 15 Si 0.789 3.211 16 H -0.203 1.203 17 H -0.208 1.208 18 H -0.187 1.187 19 N -0.167 5.167 20 C -0.032 4.032 21 C 0.018 3.982 22 H 0.127 0.873 23 N -0.371 5.371 24 C 0.295 3.705 25 O -0.475 6.475 26 C -0.182 4.182 27 C -0.048 4.048 28 C -0.202 4.202 29 C -0.194 4.194 30 H 0.119 0.881 31 H 0.114 0.886 32 H 0.133 0.867 33 H 0.105 0.895 34 H 0.103 0.897 35 H 0.032 0.968 36 H 0.040 0.960 37 H 0.079 0.921 38 H 0.037 0.963 39 H 0.072 0.928 40 H 0.113 0.887 41 H 0.173 0.827 42 H 0.231 0.769 43 H 0.131 0.869 44 H 0.135 0.865 45 H 0.110 0.890 46 H 0.101 0.899 47 H 0.084 0.916 48 H 0.055 0.945 49 H 0.101 0.899 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -25.180 -12.669 3.837 28.448 hybrid contribution 1.924 -0.049 -0.174 1.932 sum -23.256 -12.718 3.663 26.759 Atomic orbital electron populations 1.20473 0.79426 1.06269 1.05462 1.25797 0.98327 0.81547 1.03611 1.73874 0.96682 1.26690 1.20859 1.74684 1.12795 1.09843 1.24095 1.22863 0.86305 0.88786 1.01212 1.59021 1.00087 1.32713 1.25874 1.22352 1.03481 0.98513 0.86046 1.18811 0.85204 0.89921 0.91954 1.00585 1.21524 0.99205 0.98109 0.97933 1.21276 0.92107 0.97613 1.45217 0.91670 1.25728 1.02096 0.96132 0.94591 1.70056 1.26524 1.14178 1.44824 0.85529 0.78352 0.78353 0.78911 1.20327 1.20817 1.18736 1.46406 1.04238 1.09320 1.56732 1.22981 1.04443 0.76531 0.99261 1.22385 0.85923 0.99932 0.89979 0.87310 1.46462 1.27389 1.08762 1.54453 1.21735 0.84602 0.85448 0.78677 1.90746 1.28037 1.82589 1.46097 1.22616 0.94690 0.97855 1.03002 1.21503 0.93925 0.89402 0.99992 1.22014 1.01552 1.04132 0.92515 1.21851 0.98278 1.04011 0.95264 0.88071 0.88593 0.86686 0.89547 0.89735 0.96789 0.96046 0.92140 0.96308 0.92801 0.88720 0.82729 0.76916 0.86906 0.86475 0.88980 0.89866 0.91575 0.94549 0.89899 0.89657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.68 10.26 71.24 0.73 0.05 16 2 C 0.18 4.73 8.07 137.64 1.11 5.84 16 3 N -0.34 -13.53 12.18 -49.53 -0.60 -14.13 16 4 N -0.37 -17.38 9.94 -58.00 -0.58 -17.96 16 5 C 0.37 14.70 6.09 260.11 1.58 16.29 16 6 N -0.45 -19.81 4.62 -711.00 -3.29 -23.10 16 7 C 0.04 1.64 9.16 127.69 1.17 2.81 16 8 C 0.25 13.56 1.73 44.17 0.08 13.64 16 9 H -0.02 -1.49 7.92 -2.39 -0.02 -1.51 16 10 C -0.11 -6.13 8.79 71.98 0.63 -5.49 16 11 C -0.52 -29.97 7.86 25.60 0.20 -29.77 16 12 H 0.07 3.63 6.42 -2.91 -0.02 3.61 16 13 C 0.01 0.81 5.30 84.65 0.45 1.26 16 14 N -0.92 -56.09 11.32 21.45 0.24 -55.85 16 15 Si 0.96 45.90 29.54 68.60 2.03 47.92 16 16 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 17 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 18 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 19 N -0.47 -12.85 2.77 -514.87 -1.43 -14.28 16 20 C 0.09 1.44 4.40 86.38 0.38 1.82 16 21 C 0.12 1.90 3.22 45.45 0.15 2.05 16 22 H 0.11 1.35 7.91 -2.39 -0.02 1.34 16 23 N -0.72 -19.86 5.84 -439.44 -2.57 -22.43 16 24 C 0.51 15.54 8.43 87.90 0.74 16.28 16 25 O -0.59 -26.01 18.03 -3.03 -0.05 -26.06 16 26 C -0.14 -2.36 5.96 30.59 0.18 -2.18 16 27 C -0.05 -0.43 0.92 -51.13 -0.05 -0.47 16 28 C -0.15 -0.32 7.30 71.98 0.53 0.21 16 29 C -0.14 -0.97 8.49 71.98 0.61 -0.36 16 30 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.11 0.41 7.39 -2.39 -0.02 0.39 16 33 H 0.09 2.46 6.54 -2.39 -0.02 2.44 16 34 H 0.08 3.41 6.05 -2.38 -0.01 3.39 16 35 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.02 1.14 6.18 -2.38 -0.01 1.13 16 37 H 0.06 3.71 6.07 -2.38 -0.01 3.70 16 38 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 40 H 0.09 1.76 6.10 -2.39 -0.01 1.75 16 41 H 0.16 0.90 5.83 -2.38 -0.01 0.88 16 42 H 0.39 13.90 8.96 -92.71 -0.83 13.07 16 43 H 0.11 1.64 7.91 -2.38 -0.02 1.63 16 44 H 0.12 1.70 7.84 -2.39 -0.02 1.68 16 45 H 0.09 -0.19 7.76 -2.38 -0.02 -0.21 16 46 H 0.08 0.05 8.14 -2.39 -0.02 0.03 16 47 H 0.07 0.19 6.69 -2.39 -0.02 0.17 16 48 H 0.04 0.45 8.14 -2.39 -0.02 0.43 16 49 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16 50 H 0.08 0.28 8.14 -2.39 -0.02 0.26 16 Total: -1.00 -89.89 390.55 2.38 -87.51 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: 0.13 Total: 16.41 kcal Atomic # 6 Polarization: 13.47 SS G_CDS: 8.49 Total: 21.96 kcal Atomic # 7 Polarization: -139.53 SS G_CDS: -8.22 Total: -147.75 kcal Atomic # 8 Polarization: -26.01 SS G_CDS: -0.05 Total: -26.06 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.92 kcal Total: -89.89 2.38 -87.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434606731.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.367 kcal (2) G-P(sol) polarization free energy of solvation -89.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds