Wall clock time and date at job start Tue Mar 31 2020 19:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30289 * 126.34948 * 2 1 4 4 N 1.28523 * 110.06047 * 179.97438 * 3 2 1 5 5 C 1.31221 * 109.85443 * 359.74340 * 4 3 2 6 6 N 1.38584 * 126.47357 * 180.25592 * 5 4 3 7 7 C 1.46904 * 110.99813 * 107.12747 * 6 5 4 8 8 C 1.50699 * 109.47292 * 298.44746 * 7 6 5 9 9 H 1.08001 * 119.99813 * 5.06117 * 8 7 6 10 10 C 1.37879 * 120.00069 * 185.05347 * 8 7 6 11 11 N 1.31508 * 119.99899 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 119.99833 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47355 * 0.02562 * 12 10 8 14 14 H 1.48502 * 109.46832 * 120.00702 * 12 10 8 15 15 H 1.48504 * 109.47183 * 240.00425 * 12 10 8 16 16 C 1.46897 * 111.00072 * 343.17991 * 6 5 4 17 17 C 1.52996 * 109.47309 * 195.59210 * 16 6 5 18 18 C 1.53002 * 117.50094 * 243.43036 * 17 16 6 19 19 C 1.53004 * 117.50174 * 174.76931 * 17 16 6 20 20 N 1.36450 * 107.05645 * 0.40216 * 5 4 3 21 21 C 1.46495 * 127.13818 * 179.87418 * 20 5 4 22 22 C 1.53002 * 109.47113 * 265.75753 * 21 20 5 23 23 C 1.50702 * 109.47073 * 180.02562 * 22 21 20 24 24 O 1.21279 * 119.99973 * 359.97438 * 23 22 21 25 25 N 1.34782 * 119.99931 * 180.02562 * 23 22 21 26 26 C 1.46495 * 119.99971 * 179.97438 * 25 23 22 27 27 C 1.46501 * 119.99803 * 359.97438 * 25 23 22 28 28 H 1.08998 * 109.47190 * 270.04050 * 1 2 3 29 29 H 1.08995 * 109.47142 * 30.04390 * 1 2 3 30 30 H 1.09006 * 109.47325 * 150.04707 * 1 2 3 31 31 H 1.09005 * 109.47258 * 58.44954 * 7 6 5 32 32 H 1.08993 * 109.47087 * 178.44764 * 7 6 5 33 33 H 0.97002 * 119.99962 * 179.97438 * 11 10 8 34 34 H 1.09005 * 109.47010 * 315.58716 * 16 6 5 35 35 H 1.08997 * 109.47732 * 75.58652 * 16 6 5 36 36 H 1.09007 * 115.54866 * 29.09584 * 17 16 6 37 37 H 1.08999 * 117.49358 * 359.97438 * 18 17 16 38 38 H 1.09000 * 117.50393 * 145.01326 * 18 17 16 39 39 H 1.09002 * 117.49820 * 214.97696 * 19 17 16 40 40 H 1.08997 * 117.49583 * 359.97438 * 19 17 16 41 41 H 1.09004 * 109.47205 * 145.76046 * 21 20 5 42 42 H 1.08996 * 109.47638 * 25.75600 * 21 20 5 43 43 H 1.09002 * 109.47203 * 60.00454 * 22 21 20 44 44 H 1.08994 * 109.47079 * 299.99973 * 22 21 20 45 45 H 1.09007 * 109.47350 * 359.97438 * 26 25 23 46 46 H 1.09002 * 109.47518 * 119.99743 * 26 25 23 47 47 H 1.08994 * 109.47466 * 239.99856 * 26 25 23 48 48 H 1.09001 * 109.46824 * 90.00262 * 27 25 23 49 49 H 1.09005 * 109.46587 * 209.99919 * 27 25 23 50 50 H 1.09000 * 109.47277 * 330.00053 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2792 1.0494 0.0000 4 7 3.5128 0.6889 0.0005 5 6 3.5944 -0.6208 0.0064 6 7 4.7579 -1.3737 0.0138 7 6 4.9757 -1.9931 1.3279 8 6 5.1274 -0.9168 2.3718 9 1 4.9869 0.1197 2.1029 10 6 5.4454 -1.2554 3.6699 11 7 5.6169 -2.5175 3.9971 12 14 5.6327 0.0788 4.9639 13 1 5.3900 1.4066 4.3448 14 1 4.6487 -0.1464 6.0531 15 1 7.0080 0.0368 5.5228 16 6 5.9145 -0.5593 -0.3824 17 6 7.0859 -1.4765 -0.7391 18 6 8.3440 -1.3849 0.1267 19 6 8.3514 -0.8219 -1.2967 20 7 2.3174 -1.1014 0.0006 21 6 1.9009 -2.5059 0.0013 22 6 1.6613 -2.9675 -1.4376 23 6 1.2323 -4.4122 -1.4368 24 8 1.1289 -5.0135 -0.3887 25 7 0.9646 -5.0362 -2.6011 26 6 0.5481 -6.4407 -2.6004 27 6 1.0901 -4.3100 -3.8672 28 1 -0.3633 0.0007 1.0276 29 1 -0.3633 0.8895 -0.5145 30 1 -0.3634 -0.8904 -0.5131 31 1 4.1229 -2.6242 1.5780 32 1 5.8805 -2.6002 1.2979 33 1 5.8409 -2.7557 4.9104 34 1 5.6516 0.0479 -1.2487 35 1 6.2010 0.0914 0.4438 36 1 6.8133 -2.4575 -1.1285 37 1 8.3373 -0.6708 0.9502 38 1 8.8993 -2.3054 0.3067 39 1 8.9116 -1.3723 -2.0526 40 1 8.3493 0.2622 -1.4098 41 1 0.9800 -2.6115 0.5749 42 1 2.6826 -3.1165 0.4533 43 1 2.5822 -2.8619 -2.0112 44 1 0.8797 -2.3570 -1.8896 45 1 0.5123 -6.8087 -1.5749 46 1 -0.4401 -6.5270 -3.0524 47 1 1.2625 -7.0319 -3.1733 48 1 2.1042 -4.4215 -4.2510 49 1 0.3815 -4.7147 -4.5899 50 1 0.8779 -3.2536 -3.7027 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001454760829.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:39:39 Heat of formation + Delta-G solvation = 82.135794 kcal Electronic energy + Delta-G solvation = -30494.556195 eV Core-core repulsion = 26559.789982 eV Total energy + Delta-G solvation = -3934.766213 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.31498 -40.03954 -37.83275 -35.86009 -35.56775 -35.08031 -32.59372 -31.45319 -30.84628 -28.27473 -27.65513 -26.87021 -26.48191 -25.30345 -23.98740 -22.49492 -21.82866 -20.83428 -19.99344 -19.41020 -19.33050 -17.49455 -16.67137 -16.39140 -16.30181 -15.92772 -15.73516 -15.33724 -14.98694 -14.54419 -14.40252 -13.86462 -13.60228 -13.52162 -13.22154 -13.01309 -12.92706 -12.83197 -12.72830 -12.65612 -12.47506 -12.35968 -12.09456 -11.78217 -11.46086 -11.27545 -11.14579 -10.99803 -10.88925 -10.69275 -10.54561 -10.16648 -10.11152 -9.98481 -9.83036 -9.62785 -9.49788 -9.27127 -8.97339 -8.69006 -8.49092 -7.40806 -6.10372 -4.16981 2.39093 2.43100 2.59963 3.00336 3.27122 3.35663 3.44358 3.57211 4.23470 4.35416 4.40783 4.65940 4.69462 4.71669 4.79628 4.87140 5.00316 5.11997 5.14709 5.23700 5.25920 5.30922 5.34984 5.39255 5.45686 5.53287 5.56719 5.60029 5.61538 5.81154 5.86419 5.94899 6.00950 6.09935 6.15073 6.16433 6.37908 6.44105 6.48576 6.67008 6.70729 6.92667 7.03008 7.04027 7.30656 7.34280 7.60723 7.85483 7.94198 8.08261 8.18613 8.91926 9.47900 9.51003 10.96404 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.009462 B = 0.004045 C = 0.003753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2958.373806 B = 6921.229346 C = 7458.587775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.147 3.853 3 N -0.288 5.288 4 N -0.334 5.334 5 C 0.411 3.589 6 N -0.467 5.467 7 C 0.193 3.807 8 C -0.549 4.549 9 H 0.069 0.931 10 C 0.071 3.929 11 N -0.889 5.889 12 Si 0.887 3.113 13 H -0.270 1.270 14 H -0.284 1.284 15 H -0.282 1.282 16 C 0.108 3.892 17 C -0.134 4.134 18 C -0.168 4.168 19 C -0.187 4.187 20 N -0.477 5.477 21 C 0.130 3.870 22 C -0.151 4.151 23 C 0.521 3.479 24 O -0.531 6.531 25 N -0.625 5.625 26 C 0.079 3.921 27 C 0.077 3.923 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.068 0.932 31 H 0.027 0.973 32 H 0.056 0.944 33 H 0.263 0.737 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.103 0.897 37 H 0.098 0.902 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.090 0.910 41 H 0.094 0.906 42 H 0.112 0.888 43 H 0.106 0.894 44 H 0.097 0.903 45 H 0.088 0.912 46 H 0.058 0.942 47 H 0.059 0.941 48 H 0.060 0.940 49 H 0.072 0.928 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.644 -4.842 -16.654 19.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.120 4.120 3 N -0.128 5.128 4 N -0.178 5.178 5 C 0.055 3.945 6 N -0.191 5.191 7 C 0.069 3.931 8 C -0.588 4.588 9 H 0.087 0.913 10 C -0.133 4.133 11 N -0.527 5.527 12 Si 0.715 3.285 13 H -0.195 1.195 14 H -0.210 1.210 15 H -0.208 1.208 16 C -0.019 4.019 17 C -0.153 4.153 18 C -0.205 4.205 19 C -0.224 4.224 20 N -0.172 5.172 21 C 0.006 3.994 22 C -0.192 4.192 23 C 0.309 3.691 24 O -0.407 6.407 25 N -0.360 5.360 26 C -0.063 4.063 27 C -0.066 4.066 28 H 0.097 0.903 29 H 0.107 0.893 30 H 0.087 0.913 31 H 0.045 0.955 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.121 0.879 37 H 0.116 0.884 38 H 0.106 0.894 39 H 0.105 0.895 40 H 0.108 0.892 41 H 0.113 0.887 42 H 0.131 0.869 43 H 0.124 0.876 44 H 0.115 0.885 45 H 0.107 0.893 46 H 0.077 0.923 47 H 0.078 0.922 48 H 0.078 0.922 49 H 0.091 0.909 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.263 -4.240 -16.281 18.744 hybrid contribution -0.120 -0.355 1.310 1.362 sum -8.383 -4.595 -14.972 17.763 Atomic orbital electron populations 1.20047 0.84696 1.03326 1.03472 1.24445 0.96078 0.82819 1.08664 1.73821 0.96989 1.24305 1.17733 1.74631 1.11158 1.07629 1.24335 1.22575 0.84916 0.88909 0.98091 1.59360 0.98511 1.28949 1.32300 1.19989 0.98373 0.94536 0.80206 1.21769 1.48713 0.94070 0.94258 0.91329 1.24874 0.94681 0.95291 0.98414 1.69941 1.47485 1.16071 1.19201 0.86585 0.77728 0.82591 0.81595 1.19452 1.21004 1.20786 1.21425 0.87112 0.93147 1.00228 1.22120 0.88880 1.00527 1.03766 1.22977 1.01235 1.02754 0.93568 1.22942 1.01760 1.00283 0.97462 1.45996 1.06072 1.07580 1.57588 1.21477 1.03739 0.78722 0.95481 1.21996 1.04237 0.93226 0.99761 1.20466 0.76545 0.88831 0.83278 1.90750 1.51760 1.67406 1.30820 1.47711 1.68875 1.12667 1.06734 1.21682 0.99215 0.80993 1.04415 1.21826 1.02194 0.97338 0.85240 0.90251 0.89326 0.91336 0.95481 0.92606 0.92777 0.91560 0.91171 0.87889 0.88373 0.89445 0.89486 0.89198 0.88748 0.86948 0.87599 0.88528 0.89336 0.92329 0.92245 0.92189 0.90910 0.90760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.66 10.17 36.00 0.37 -0.30 16 2 C 0.15 2.60 8.07 -154.02 -1.24 1.36 16 3 N -0.29 -6.15 12.18 32.99 0.40 -5.75 16 4 N -0.33 -7.69 11.01 30.32 0.33 -7.36 16 5 C 0.41 8.81 5.83 -318.87 -1.86 6.95 16 6 N -0.47 -9.87 4.69 -175.88 -0.82 -10.69 16 7 C 0.19 4.75 4.81 -4.97 -0.02 4.73 16 8 C -0.55 -15.07 7.53 -34.44 -0.26 -15.33 16 9 H 0.07 1.99 6.43 -52.49 -0.34 1.65 16 10 C 0.07 1.98 5.46 -17.82 -0.10 1.88 16 11 N -0.89 -25.69 13.29 55.43 0.74 -24.95 16 12 Si 0.89 22.14 29.54 -169.99 -5.02 17.12 16 13 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 14 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 15 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 16 C 0.11 2.15 4.57 -3.83 -0.02 2.13 16 17 C -0.13 -2.30 5.06 -90.62 -0.46 -2.76 16 18 C -0.17 -2.84 10.18 -26.69 -0.27 -3.11 16 19 C -0.19 -2.69 10.26 -26.69 -0.27 -2.97 16 20 N -0.48 -8.73 2.81 -114.09 -0.32 -9.05 16 21 C 0.13 2.03 5.08 -4.04 -0.02 2.01 16 22 C -0.15 -1.78 4.58 -27.88 -0.13 -1.91 16 23 C 0.52 6.57 7.67 -10.98 -0.08 6.49 16 24 O -0.53 -8.77 15.31 5.56 0.09 -8.68 16 25 N -0.62 -5.97 3.27 -189.51 -0.62 -6.59 16 26 C 0.08 0.65 10.68 59.84 0.64 1.29 16 27 C 0.08 0.47 10.29 59.85 0.62 1.09 16 28 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.07 0.63 7.84 -51.93 -0.41 0.23 16 31 H 0.03 0.72 6.27 -51.93 -0.33 0.39 16 32 H 0.06 1.45 7.43 -51.93 -0.39 1.07 16 33 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 34 H 0.07 1.27 7.81 -51.93 -0.41 0.87 16 35 H 0.07 1.59 6.18 -51.93 -0.32 1.27 16 36 H 0.10 1.74 8.14 -51.93 -0.42 1.32 16 37 H 0.10 1.82 8.03 -51.93 -0.42 1.40 16 38 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 39 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 41 H 0.09 1.38 7.99 -51.93 -0.41 0.97 16 42 H 0.11 2.09 6.12 -51.93 -0.32 1.77 16 43 H 0.11 1.26 8.11 -51.93 -0.42 0.84 16 44 H 0.10 0.90 7.27 -51.93 -0.38 0.53 16 45 H 0.09 0.90 6.90 -51.93 -0.36 0.54 16 46 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 49 H 0.07 0.31 8.07 -51.93 -0.42 -0.11 16 50 H 0.07 0.41 6.44 -51.93 -0.33 0.07 16 LS Contribution 406.12 15.07 6.12 6.12 Total: -1.00 -34.53 406.12 -10.41 -44.94 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -8.18 Total: 3.35 kcal Atomic # 6 Polarization: 4.66 SS G_CDS: -3.12 Total: 1.54 kcal Atomic # 7 Polarization: -64.09 SS G_CDS: -0.29 Total: -64.38 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: 0.09 Total: -8.68 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.53 -10.41 -44.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001454760829.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.072 kcal (2) G-P(sol) polarization free energy of solvation -34.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds