Wall clock time and date at job start Tue Mar 31 2020 19:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30289 * 126.34948 * 2 1 4 4 N 1.28523 * 110.06047 * 179.97438 * 3 2 1 5 5 C 1.31221 * 109.85443 * 359.74340 * 4 3 2 6 6 N 1.38584 * 126.47357 * 180.25592 * 5 4 3 7 7 C 1.46904 * 110.99813 * 107.12747 * 6 5 4 8 8 C 1.50699 * 109.47292 * 298.44746 * 7 6 5 9 9 H 1.08001 * 119.99813 * 5.06117 * 8 7 6 10 10 C 1.37879 * 120.00069 * 185.05347 * 8 7 6 11 11 N 1.31508 * 119.99899 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 119.99833 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47355 * 0.02562 * 12 10 8 14 14 H 1.48502 * 109.46832 * 120.00702 * 12 10 8 15 15 H 1.48504 * 109.47183 * 240.00425 * 12 10 8 16 16 C 1.46897 * 111.00072 * 343.17991 * 6 5 4 17 17 C 1.52996 * 109.47309 * 195.59210 * 16 6 5 18 18 C 1.53002 * 117.50094 * 243.43036 * 17 16 6 19 19 C 1.53004 * 117.50174 * 174.76931 * 17 16 6 20 20 N 1.36450 * 107.05645 * 0.40216 * 5 4 3 21 21 C 1.46495 * 127.13818 * 179.87418 * 20 5 4 22 22 C 1.53002 * 109.47113 * 265.75753 * 21 20 5 23 23 C 1.50702 * 109.47073 * 180.02562 * 22 21 20 24 24 O 1.21279 * 119.99973 * 359.97438 * 23 22 21 25 25 N 1.34782 * 119.99931 * 180.02562 * 23 22 21 26 26 C 1.46495 * 119.99971 * 179.97438 * 25 23 22 27 27 C 1.46501 * 119.99803 * 359.97438 * 25 23 22 28 28 H 1.08998 * 109.47190 * 270.04050 * 1 2 3 29 29 H 1.08995 * 109.47142 * 30.04390 * 1 2 3 30 30 H 1.09006 * 109.47325 * 150.04707 * 1 2 3 31 31 H 1.09005 * 109.47258 * 58.44954 * 7 6 5 32 32 H 1.08993 * 109.47087 * 178.44764 * 7 6 5 33 33 H 0.97002 * 119.99962 * 179.97438 * 11 10 8 34 34 H 1.09005 * 109.47010 * 315.58716 * 16 6 5 35 35 H 1.08997 * 109.47732 * 75.58652 * 16 6 5 36 36 H 1.09007 * 115.54866 * 29.09584 * 17 16 6 37 37 H 1.08999 * 117.49358 * 359.97438 * 18 17 16 38 38 H 1.09000 * 117.50393 * 145.01326 * 18 17 16 39 39 H 1.09002 * 117.49820 * 214.97696 * 19 17 16 40 40 H 1.08997 * 117.49583 * 359.97438 * 19 17 16 41 41 H 1.09004 * 109.47205 * 145.76046 * 21 20 5 42 42 H 1.08996 * 109.47638 * 25.75600 * 21 20 5 43 43 H 1.09002 * 109.47203 * 60.00454 * 22 21 20 44 44 H 1.08994 * 109.47079 * 299.99973 * 22 21 20 45 45 H 1.09007 * 109.47350 * 359.97438 * 26 25 23 46 46 H 1.09002 * 109.47518 * 119.99743 * 26 25 23 47 47 H 1.08994 * 109.47466 * 239.99856 * 26 25 23 48 48 H 1.09001 * 109.46824 * 90.00262 * 27 25 23 49 49 H 1.09005 * 109.46587 * 209.99919 * 27 25 23 50 50 H 1.09000 * 109.47277 * 330.00053 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2792 1.0494 0.0000 4 7 3.5128 0.6889 0.0005 5 6 3.5944 -0.6208 0.0064 6 7 4.7579 -1.3737 0.0138 7 6 4.9757 -1.9931 1.3279 8 6 5.1274 -0.9168 2.3718 9 1 4.9869 0.1197 2.1029 10 6 5.4454 -1.2554 3.6699 11 7 5.6169 -2.5175 3.9971 12 14 5.6327 0.0788 4.9639 13 1 5.3900 1.4066 4.3448 14 1 4.6487 -0.1464 6.0531 15 1 7.0080 0.0368 5.5228 16 6 5.9145 -0.5593 -0.3824 17 6 7.0859 -1.4765 -0.7391 18 6 8.3440 -1.3849 0.1267 19 6 8.3514 -0.8219 -1.2967 20 7 2.3174 -1.1014 0.0006 21 6 1.9009 -2.5059 0.0013 22 6 1.6613 -2.9675 -1.4376 23 6 1.2323 -4.4122 -1.4368 24 8 1.1289 -5.0135 -0.3887 25 7 0.9646 -5.0362 -2.6011 26 6 0.5481 -6.4407 -2.6004 27 6 1.0901 -4.3100 -3.8672 28 1 -0.3633 0.0007 1.0276 29 1 -0.3633 0.8895 -0.5145 30 1 -0.3634 -0.8904 -0.5131 31 1 4.1229 -2.6242 1.5780 32 1 5.8805 -2.6002 1.2979 33 1 5.8409 -2.7557 4.9104 34 1 5.6516 0.0479 -1.2487 35 1 6.2010 0.0914 0.4438 36 1 6.8133 -2.4575 -1.1285 37 1 8.3373 -0.6708 0.9502 38 1 8.8993 -2.3054 0.3067 39 1 8.9116 -1.3723 -2.0526 40 1 8.3493 0.2622 -1.4098 41 1 0.9800 -2.6115 0.5749 42 1 2.6826 -3.1165 0.4533 43 1 2.5822 -2.8619 -2.0112 44 1 0.8797 -2.3570 -1.8896 45 1 0.5123 -6.8087 -1.5749 46 1 -0.4401 -6.5270 -3.0524 47 1 1.2625 -7.0319 -3.1733 48 1 2.1042 -4.4215 -4.2510 49 1 0.3815 -4.7147 -4.5899 50 1 0.8779 -3.2536 -3.7027 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001454760829.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:39:38 Heat of formation + Delta-G solvation = 61.622273 kcal Electronic energy + Delta-G solvation = -30495.445728 eV Core-core repulsion = 26559.789982 eV Total energy + Delta-G solvation = -3935.655746 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.85558 -40.98456 -39.41010 -37.11783 -36.72903 -36.38487 -34.69961 -32.70327 -32.08397 -29.58161 -28.96170 -28.22202 -27.35765 -27.07844 -25.16721 -24.29308 -23.12713 -22.27675 -21.47065 -20.87295 -20.28894 -18.83448 -18.42101 -17.58393 -17.47596 -17.19028 -17.05728 -16.72553 -16.54064 -16.15972 -15.61326 -15.27778 -14.97476 -14.65542 -14.54691 -14.40747 -13.99994 -13.94647 -13.66388 -13.52303 -13.37433 -13.33523 -13.28014 -13.18146 -13.10089 -12.89259 -12.71319 -12.55110 -12.35348 -12.31464 -12.29406 -12.07565 -11.93876 -11.29323 -11.20020 -11.15765 -10.90279 -10.72086 -10.65621 -10.37345 -9.72113 -9.13781 -8.26925 -6.40410 0.89889 1.25916 1.29090 1.33687 1.41770 1.48832 1.95663 2.07893 2.30800 2.87924 3.02389 3.11942 3.45701 3.57161 3.58023 3.73279 3.98317 4.05444 4.12930 4.17919 4.20496 4.29056 4.33867 4.39919 4.48224 4.53255 4.60355 4.64517 4.71894 4.72709 4.78152 4.84431 4.93967 4.94715 4.95177 4.99657 5.03368 5.10636 5.17277 5.18981 5.24003 5.34958 5.39948 5.46777 5.64109 5.73006 5.88818 6.01984 6.23752 6.47855 6.73877 7.04609 7.29183 7.90683 8.78224 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.009462 B = 0.004045 C = 0.003753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2958.373806 B = 6921.229346 C = 7458.587775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.169 3.831 3 N -0.330 5.330 4 N -0.364 5.364 5 C 0.387 3.613 6 N -0.455 5.455 7 C 0.215 3.785 8 C -0.551 4.551 9 H 0.049 0.951 10 C 0.028 3.972 11 N -0.915 5.915 12 Si 0.942 3.058 13 H -0.281 1.281 14 H -0.278 1.278 15 H -0.269 1.269 16 C 0.117 3.883 17 C -0.150 4.150 18 C -0.184 4.184 19 C -0.149 4.149 20 N -0.475 5.475 21 C 0.130 3.870 22 C -0.135 4.135 23 C 0.517 3.483 24 O -0.582 6.582 25 N -0.619 5.619 26 C 0.075 3.925 27 C 0.070 3.930 28 H 0.089 0.911 29 H 0.109 0.891 30 H 0.102 0.898 31 H 0.007 0.993 32 H 0.039 0.961 33 H 0.266 0.734 34 H 0.071 0.929 35 H 0.035 0.965 36 H 0.108 0.892 37 H 0.072 0.928 38 H 0.096 0.904 39 H 0.119 0.881 40 H 0.096 0.904 41 H 0.106 0.894 42 H 0.076 0.924 43 H 0.106 0.894 44 H 0.131 0.869 45 H 0.062 0.938 46 H 0.084 0.916 47 H 0.075 0.925 48 H 0.064 0.936 49 H 0.098 0.902 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.956 -4.897 -18.953 21.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.099 4.099 3 N -0.169 5.169 4 N -0.208 5.208 5 C 0.029 3.971 6 N -0.178 5.178 7 C 0.090 3.910 8 C -0.590 4.590 9 H 0.067 0.933 10 C -0.173 4.173 11 N -0.554 5.554 12 Si 0.768 3.232 13 H -0.206 1.206 14 H -0.204 1.204 15 H -0.194 1.194 16 C -0.010 4.010 17 C -0.168 4.168 18 C -0.221 4.221 19 C -0.186 4.186 20 N -0.170 5.170 21 C 0.007 3.993 22 C -0.176 4.176 23 C 0.305 3.695 24 O -0.462 6.462 25 N -0.352 5.352 26 C -0.067 4.067 27 C -0.072 4.072 28 H 0.107 0.893 29 H 0.127 0.873 30 H 0.120 0.880 31 H 0.025 0.975 32 H 0.057 0.943 33 H 0.076 0.924 34 H 0.090 0.910 35 H 0.053 0.947 36 H 0.126 0.874 37 H 0.091 0.909 38 H 0.114 0.886 39 H 0.137 0.863 40 H 0.115 0.885 41 H 0.124 0.876 42 H 0.095 0.905 43 H 0.124 0.876 44 H 0.148 0.852 45 H 0.081 0.919 46 H 0.103 0.897 47 H 0.093 0.907 48 H 0.083 0.917 49 H 0.117 0.883 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -9.585 -4.295 -18.638 21.394 hybrid contribution 0.186 -0.338 1.956 1.994 sum -9.399 -4.633 -16.682 19.700 Atomic orbital electron populations 1.20393 0.80247 1.06041 1.04906 1.25580 0.98157 0.81569 1.04624 1.73753 0.96801 1.25919 1.20469 1.74514 1.12626 1.08643 1.24976 1.22638 0.85853 0.88894 0.99667 1.59324 0.99190 1.29303 1.30028 1.19522 0.96490 0.93481 0.81511 1.21846 1.48301 0.93673 0.95206 0.93295 1.25514 0.94612 0.97032 1.00106 1.70015 1.48269 1.17317 1.19786 0.85743 0.78354 0.79651 0.79430 1.20607 1.20376 1.19381 1.21339 0.87615 0.93208 0.98873 1.22075 0.88627 1.00741 1.05404 1.22941 1.01616 1.03038 0.94542 1.23040 0.98660 1.00890 0.96010 1.46220 1.05206 1.08789 1.56748 1.21522 1.02692 0.76775 0.98302 1.21847 1.05369 0.93383 0.96972 1.20563 0.76381 0.88964 0.83545 1.90736 1.54328 1.68375 1.32762 1.47851 1.67140 1.13256 1.06983 1.21812 1.01161 0.80344 1.03352 1.22105 1.03382 0.97753 0.83974 0.89280 0.87259 0.87983 0.97533 0.94251 0.92447 0.91018 0.94703 0.87415 0.90903 0.88572 0.86309 0.88529 0.87621 0.90522 0.87570 0.85159 0.91931 0.89715 0.90666 0.91693 0.88313 0.89762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.16 10.17 71.23 0.72 -0.44 16 2 C 0.17 5.77 8.07 137.64 1.11 6.88 16 3 N -0.33 -14.11 12.18 -49.54 -0.60 -14.71 16 4 N -0.36 -17.22 11.01 -58.00 -0.64 -17.86 16 5 C 0.39 17.02 5.83 260.11 1.52 18.54 16 6 N -0.46 -19.99 4.69 -710.36 -3.33 -23.33 16 7 C 0.21 11.15 4.81 85.56 0.41 11.56 16 8 C -0.55 -31.54 7.53 25.60 0.19 -31.35 16 9 H 0.05 2.98 6.43 -2.91 -0.02 2.96 16 10 C 0.03 1.61 5.46 84.66 0.46 2.08 16 11 N -0.91 -54.15 13.29 21.45 0.28 -53.87 16 12 Si 0.94 46.50 29.54 68.60 2.03 48.52 16 13 H -0.28 -14.25 7.11 99.48 0.71 -13.55 16 14 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 15 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 16 C 0.12 4.81 4.57 86.30 0.39 5.21 16 17 C -0.15 -5.18 5.06 -10.79 -0.05 -5.23 16 18 C -0.18 -6.28 10.18 30.62 0.31 -5.97 16 19 C -0.15 -4.04 10.26 30.62 0.31 -3.73 16 20 N -0.47 -17.34 2.81 -514.86 -1.45 -18.79 16 21 C 0.13 4.06 5.08 86.38 0.44 4.50 16 22 C -0.14 -2.97 4.58 29.85 0.14 -2.83 16 23 C 0.52 12.55 7.67 87.66 0.67 13.22 16 24 O -0.58 -19.55 15.31 -3.03 -0.05 -19.60 16 25 N -0.62 -10.49 3.27 -871.88 -2.85 -13.35 16 26 C 0.08 1.09 10.68 127.77 1.37 2.46 16 27 C 0.07 0.61 10.29 127.77 1.31 1.93 16 28 H 0.09 1.74 8.14 -2.39 -0.02 1.73 16 29 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.10 1.43 7.84 -2.38 -0.02 1.41 16 31 H 0.01 0.37 6.27 -2.38 -0.01 0.36 16 32 H 0.04 2.16 7.43 -2.39 -0.02 2.14 16 33 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 34 H 0.07 2.82 7.81 -2.38 -0.02 2.81 16 35 H 0.03 1.67 6.18 -2.39 -0.01 1.65 16 36 H 0.11 3.63 8.14 -2.38 -0.02 3.61 16 37 H 0.07 2.84 8.03 -2.39 -0.02 2.82 16 38 H 0.10 3.07 8.14 -2.39 -0.02 3.05 16 39 H 0.12 2.54 8.14 -2.39 -0.02 2.52 16 40 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 41 H 0.11 3.03 7.99 -2.38 -0.02 3.01 16 42 H 0.08 2.99 6.12 -2.39 -0.01 2.98 16 43 H 0.11 2.37 8.11 -2.39 -0.02 2.35 16 44 H 0.13 1.96 7.27 -2.39 -0.02 1.94 16 45 H 0.06 1.27 6.90 -2.38 -0.02 1.25 16 46 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 47 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 48 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 49 H 0.10 0.40 8.07 -2.38 -0.02 0.38 16 50 H 0.08 0.60 6.44 -2.39 -0.02 0.58 16 Total: -1.00 -79.80 406.12 3.63 -76.17 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: 0.93 Total: 19.99 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: 9.31 Total: 16.82 kcal Atomic # 7 Polarization: -133.31 SS G_CDS: -8.59 Total: -141.90 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: -0.05 Total: -19.60 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.52 kcal Total: -79.80 3.63 -76.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001454760829.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.792 kcal (2) G-P(sol) polarization free energy of solvation -79.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds