Wall clock time and date at job start Tue Mar 31 2020 19:35:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30291 * 126.34783 * 2 1 4 4 N 1.28527 * 110.05272 * 180.02562 * 3 2 1 5 5 C 1.31213 * 109.86410 * 359.97438 * 4 3 2 6 6 N 1.38579 * 126.47853 * 179.97438 * 5 4 3 7 7 C 1.46904 * 110.99835 * 112.03811 * 6 5 4 8 8 C 1.46900 * 110.99834 * 348.09318 * 6 5 4 9 9 H 1.09000 * 109.47517 * 59.99670 * 8 6 5 10 10 C 1.53007 * 109.46639 * 299.99535 * 8 6 5 11 11 C 1.50699 * 109.47044 * 179.97438 * 8 6 5 12 12 H 1.08004 * 119.99988 * 359.97438 * 11 8 6 13 13 C 1.37880 * 119.99754 * 179.97438 * 11 8 6 14 14 N 1.31509 * 120.00273 * 0.02562 * 13 11 8 15 15 Si 1.86806 * 119.99774 * 179.97438 * 13 11 8 16 16 H 1.48503 * 109.46759 * 60.00236 * 15 13 11 17 17 H 1.48496 * 109.47149 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47323 * 300.00718 * 15 13 11 19 19 N 1.36459 * 107.04975 * 0.23151 * 5 4 3 20 20 C 1.46499 * 127.13594 * 179.77781 * 19 5 4 21 21 C 1.53002 * 109.46700 * 265.88211 * 20 19 5 22 22 C 1.50699 * 110.01675 * 56.00696 * 21 20 19 23 23 N 1.34779 * 120.00242 * 292.33353 * 22 21 20 24 24 O 1.21287 * 119.99904 * 112.33478 * 22 21 20 25 25 C 1.54266 * 110.03415 * 294.61314 * 21 20 19 26 26 C 1.54961 * 104.16275 * 217.13736 * 25 21 20 27 27 C 1.54885 * 102.77710 * 37.88608 * 26 25 21 28 28 C 1.53876 * 110.03280 * 177.39673 * 21 20 19 29 29 H 1.08997 * 109.47325 * 89.97546 * 1 2 3 30 30 H 1.09000 * 109.47253 * 209.97763 * 1 2 3 31 31 H 1.09004 * 109.46903 * 329.97842 * 1 2 3 32 32 H 1.09000 * 109.47468 * 290.12472 * 7 6 5 33 33 H 1.09006 * 109.47001 * 50.12741 * 7 6 5 34 34 H 1.08998 * 109.47152 * 170.11568 * 7 6 5 35 35 H 1.09007 * 109.46754 * 180.02562 * 10 8 6 36 36 H 1.08995 * 109.46851 * 299.99690 * 10 8 6 37 37 H 1.08994 * 109.47133 * 60.00099 * 10 8 6 38 38 H 0.97000 * 119.99787 * 179.97438 * 14 13 11 39 39 H 1.09003 * 109.47329 * 25.87650 * 20 19 5 40 40 H 1.09000 * 109.47597 * 145.88397 * 20 19 5 41 41 H 0.97001 * 119.99685 * 5.33099 * 23 22 21 42 42 H 0.96998 * 119.99933 * 185.33215 * 23 22 21 43 43 H 1.08994 * 110.48418 * 335.78704 * 25 21 20 44 44 H 1.09004 * 110.48155 * 98.42589 * 25 21 20 45 45 H 1.09007 * 110.72022 * 279.57336 * 26 25 21 46 46 H 1.09002 * 110.92427 * 156.30038 * 26 25 21 47 47 H 1.09002 * 110.48649 * 203.40355 * 27 26 25 48 48 H 1.09002 * 110.48708 * 80.76318 * 27 26 25 49 49 H 1.08996 * 110.03313 * 238.56940 * 28 21 20 50 50 H 1.08998 * 110.03115 * 0.02562 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2792 1.0494 0.0000 4 7 3.5128 0.6888 -0.0005 5 6 3.5945 -0.6208 -0.0004 6 7 4.7579 -1.3737 -0.0013 7 6 4.9215 -2.0915 1.2700 8 6 5.9287 -0.5332 -0.2855 9 1 6.0140 0.2410 0.4770 10 6 5.7660 0.1200 -1.6595 11 6 7.1721 -1.3846 -0.2776 12 1 7.0999 -2.4440 -0.0807 13 6 8.4019 -0.8109 -0.5218 14 7 8.4899 0.4792 -0.7610 15 14 9.9433 -1.8661 -0.5112 16 1 9.8275 -2.9219 -1.5491 17 1 11.1268 -1.0165 -0.7987 18 1 10.1010 -2.4989 0.8229 19 7 2.3173 -1.1013 -0.0049 20 6 1.9008 -2.5059 -0.0111 21 6 1.6597 -2.9599 -1.4521 22 6 2.8958 -2.7236 -2.2811 23 7 3.2983 -1.4652 -2.5474 24 8 3.5285 -3.6660 -2.7087 25 6 0.4646 -2.1930 -2.0549 26 6 -0.2558 -3.2451 -2.9356 27 6 -0.1264 -4.5405 -2.0965 28 6 1.2844 -4.4520 -1.4789 29 1 -0.3634 0.0004 -1.0276 30 1 -0.3634 -0.8902 0.5135 31 1 -0.3633 0.8898 0.5142 32 1 5.1453 -1.3787 2.0636 33 1 4.0001 -2.6230 1.5082 34 1 5.7401 -2.8056 1.1813 35 1 6.6349 0.7434 -1.8707 36 1 5.6808 -0.6541 -2.4220 37 1 4.8667 0.7358 -1.6649 38 1 9.3551 0.8828 -0.9324 39 1 2.6830 -3.1188 0.4369 40 1 0.9806 -2.6146 0.5629 41 1 2.8386 -0.7131 -2.1426 42 1 4.0476 -1.3117 -3.1439 43 1 -0.1981 -1.8382 -1.2657 44 1 0.8144 -1.3595 -2.6641 45 1 0.2486 -3.3547 -3.8957 46 1 -1.3034 -2.9808 -3.0793 47 1 -0.2083 -5.4192 -2.7363 48 1 -0.8846 -4.5654 -1.3138 49 1 1.9959 -5.0050 -2.0921 50 1 1.2737 -4.8525 -0.4652 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001460402056.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:04 Heat of formation + Delta-G solvation = 61.974034 kcal Electronic energy + Delta-G solvation = -32580.970569 eV Core-core repulsion = 28645.330076 eV Total energy + Delta-G solvation = -3935.640493 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.89939 -40.20223 -37.34372 -37.07643 -34.85406 -33.24500 -32.97886 -31.64044 -30.25815 -29.27824 -28.87151 -27.56034 -25.67906 -25.22325 -24.30105 -22.60074 -21.99143 -20.97566 -20.58579 -19.52384 -19.04351 -17.59523 -16.87052 -16.32925 -16.09083 -16.07418 -15.48114 -15.08419 -14.99522 -14.64390 -14.38420 -13.98820 -13.93767 -13.74412 -13.47984 -13.15504 -12.87997 -12.73309 -12.61269 -12.40084 -11.98345 -11.87112 -11.48716 -11.34455 -11.31710 -11.21816 -11.08768 -10.96074 -10.90968 -10.75657 -10.63094 -10.41523 -10.27481 -10.08734 -10.01926 -9.72316 -9.54973 -9.36921 -9.12199 -8.66437 -8.44027 -7.44801 -6.04828 -4.11906 2.06993 2.49230 2.90281 3.26466 3.30906 3.35706 3.38630 3.68728 4.16858 4.29852 4.32576 4.47932 4.53285 4.58296 4.63089 4.88834 4.91566 5.04386 5.16175 5.19936 5.24390 5.27884 5.35249 5.40385 5.43475 5.54046 5.58309 5.64979 5.68942 5.80297 5.84703 5.93365 5.97321 6.02428 6.11425 6.20601 6.25555 6.43777 6.80344 6.88237 7.08147 7.15067 7.19271 7.38631 7.62370 7.68759 7.73427 7.92323 8.22912 8.42243 8.59523 8.89376 9.24414 9.52935 11.01225 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.015170 B = 0.004605 C = 0.003982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.281654 B = 6079.377618 C = 7030.094574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.141 3.859 3 N -0.283 5.283 4 N -0.317 5.317 5 C 0.390 3.610 6 N -0.452 5.452 7 C 0.041 3.959 8 C 0.233 3.767 9 H 0.023 0.977 10 C -0.135 4.135 11 C -0.515 4.515 12 H 0.063 0.937 13 C 0.065 3.935 14 N -0.884 5.884 15 Si 0.899 3.101 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.277 1.277 19 N -0.494 5.494 20 C 0.125 3.875 21 C -0.096 4.096 22 C 0.537 3.463 23 N -0.833 5.833 24 O -0.539 6.539 25 C -0.124 4.124 26 C -0.124 4.124 27 C -0.121 4.121 28 C -0.112 4.112 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.035 0.965 33 H 0.043 0.957 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.026 0.974 37 H 0.028 0.972 38 H 0.263 0.737 39 H 0.105 0.895 40 H 0.100 0.900 41 H 0.393 0.607 42 H 0.404 0.596 43 H 0.085 0.915 44 H 0.070 0.930 45 H 0.067 0.933 46 H 0.070 0.930 47 H 0.068 0.932 48 H 0.066 0.934 49 H 0.096 0.904 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.617 -6.883 0.253 21.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.126 4.126 3 N -0.123 5.123 4 N -0.162 5.162 5 C 0.035 3.965 6 N -0.176 5.176 7 C -0.106 4.106 8 C 0.129 3.871 9 H 0.040 0.960 10 C -0.194 4.194 11 C -0.554 4.554 12 H 0.081 0.919 13 C -0.137 4.137 14 N -0.522 5.522 15 Si 0.726 3.274 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.203 1.203 19 N -0.193 5.193 20 C 0.001 3.999 21 C -0.101 4.101 22 C 0.320 3.680 23 N -0.397 5.397 24 O -0.416 6.416 25 C -0.161 4.161 26 C -0.161 4.161 27 C -0.159 4.159 28 C -0.150 4.150 29 H 0.101 0.899 30 H 0.091 0.909 31 H 0.108 0.892 32 H 0.054 0.946 33 H 0.061 0.939 34 H 0.111 0.889 35 H 0.106 0.894 36 H 0.045 0.955 37 H 0.047 0.953 38 H 0.073 0.927 39 H 0.123 0.877 40 H 0.118 0.882 41 H 0.223 0.777 42 H 0.237 0.763 43 H 0.103 0.897 44 H 0.088 0.912 45 H 0.086 0.914 46 H 0.089 0.911 47 H 0.087 0.913 48 H 0.085 0.915 49 H 0.115 0.885 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -19.730 -6.338 -0.345 20.726 hybrid contribution 0.820 -0.933 0.542 1.355 sum -18.910 -7.271 0.197 20.260 Atomic orbital electron populations 1.20261 0.84607 1.03779 1.03428 1.24546 0.96189 0.82770 1.09058 1.74021 0.97054 1.24100 1.17130 1.74941 1.10356 1.07189 1.23667 1.23250 0.84961 0.89427 0.98864 1.59167 1.00159 1.27795 1.30514 1.22331 1.01166 0.98607 0.88532 1.19320 0.82733 0.90137 0.94895 0.95977 1.21920 1.01265 0.99133 0.97055 1.21010 0.90105 0.94805 1.49474 0.91901 1.24868 0.98914 0.95004 0.94944 1.69901 1.24882 1.10000 1.47435 0.86551 0.82115 0.80138 0.78551 1.20166 1.21268 1.20310 1.46416 1.06411 1.07643 1.58835 1.21990 1.02760 0.79173 0.95989 1.21840 0.95157 0.98622 0.94458 1.19858 0.85075 0.83217 0.79800 1.44117 1.37112 1.07565 1.50948 1.90689 1.56037 1.41835 1.53025 1.22824 0.95456 0.98006 0.99825 1.22506 1.00266 0.94703 0.98631 1.22346 0.96426 0.97984 0.99094 1.22184 0.97823 0.92554 1.02415 0.89907 0.90916 0.89155 0.94647 0.93858 0.88874 0.89355 0.95462 0.95282 0.92726 0.87728 0.88189 0.77670 0.76254 0.89674 0.91152 0.91390 0.91101 0.91283 0.91510 0.88546 0.91065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.52 8.37 36.00 0.30 -0.22 16 2 C 0.14 1.96 6.98 -154.02 -1.08 0.88 16 3 N -0.28 -5.17 12.18 32.99 0.40 -4.77 16 4 N -0.32 -6.66 9.52 30.31 0.29 -6.37 16 5 C 0.39 7.35 3.35 -318.87 -1.07 6.28 16 6 N -0.45 -9.35 4.30 -176.07 -0.76 -10.11 16 7 C 0.04 0.76 8.89 60.07 0.53 1.29 16 8 C 0.23 5.80 1.70 -68.86 -0.12 5.69 16 9 H 0.02 0.64 7.99 -51.93 -0.41 0.22 16 10 C -0.14 -3.31 8.05 37.16 0.30 -3.01 16 11 C -0.52 -13.76 7.99 -34.44 -0.28 -14.03 16 12 H 0.06 1.66 6.41 -52.48 -0.34 1.33 16 13 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 14 N -0.88 -25.03 11.32 55.43 0.63 -24.40 16 15 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 16 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 17 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 19 N -0.49 -7.10 1.72 -114.08 -0.20 -7.29 16 20 C 0.12 1.41 4.42 -4.04 -0.02 1.39 16 21 C -0.10 -1.11 0.64 -154.54 -0.10 -1.21 16 22 C 0.54 8.71 6.44 -10.98 -0.07 8.64 16 23 N -0.83 -13.81 5.86 31.22 0.18 -13.63 16 24 O -0.54 -10.74 16.09 5.55 0.09 -10.65 16 25 C -0.12 -1.13 4.26 -25.03 -0.11 -1.24 16 26 C -0.12 -1.01 6.91 -24.70 -0.17 -1.18 16 27 C -0.12 -0.94 6.83 -25.07 -0.17 -1.11 16 28 C -0.11 -1.13 6.04 -25.61 -0.15 -1.29 16 29 H 0.08 0.58 6.81 -51.93 -0.35 0.22 16 30 H 0.07 0.44 6.90 -51.93 -0.36 0.08 16 31 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.03 0.68 8.12 -51.93 -0.42 0.26 16 33 H 0.04 0.65 5.73 -51.93 -0.30 0.36 16 34 H 0.09 1.78 6.46 -51.93 -0.34 1.45 16 35 H 0.09 2.40 6.07 -51.92 -0.32 2.09 16 36 H 0.03 0.64 6.34 -51.93 -0.33 0.31 16 37 H 0.03 0.67 5.89 -51.93 -0.31 0.37 16 38 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 39 H 0.10 1.30 5.80 -51.93 -0.30 0.99 16 40 H 0.10 0.78 7.30 -51.93 -0.38 0.40 16 41 H 0.39 6.42 5.17 -40.82 -0.21 6.21 16 42 H 0.40 7.25 7.15 -40.82 -0.29 6.95 16 43 H 0.08 0.60 4.53 -51.93 -0.24 0.36 16 44 H 0.07 0.74 7.00 -51.93 -0.36 0.38 16 45 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 46 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 49 H 0.10 1.25 6.44 -51.93 -0.33 0.92 16 50 H 0.07 0.60 7.67 -51.93 -0.40 0.20 16 LS Contribution 364.83 15.07 5.50 5.50 Total: -1.00 -32.57 364.83 -8.40 -40.97 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: -7.23 Total: 11.96 kcal Atomic # 6 Polarization: 4.86 SS G_CDS: -2.29 Total: 2.58 kcal Atomic # 7 Polarization: -67.12 SS G_CDS: 0.55 Total: -66.58 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.09 Total: -10.65 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.57 -8.40 -40.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460402056.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.945 kcal (2) G-P(sol) polarization free energy of solvation -32.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds