Wall clock time and date at job start Tue Mar 31 2020 19:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30291 * 126.34783 * 2 1 4 4 N 1.28527 * 110.05272 * 180.02562 * 3 2 1 5 5 C 1.31213 * 109.86410 * 359.97438 * 4 3 2 6 6 N 1.38579 * 126.47853 * 179.97438 * 5 4 3 7 7 C 1.46904 * 110.99835 * 112.03811 * 6 5 4 8 8 C 1.46900 * 110.99834 * 348.09318 * 6 5 4 9 9 H 1.09000 * 109.47517 * 59.99670 * 8 6 5 10 10 C 1.53007 * 109.46639 * 299.99535 * 8 6 5 11 11 C 1.50699 * 109.47044 * 179.97438 * 8 6 5 12 12 H 1.08004 * 119.99988 * 359.97438 * 11 8 6 13 13 C 1.37880 * 119.99754 * 179.97438 * 11 8 6 14 14 N 1.31509 * 120.00273 * 0.02562 * 13 11 8 15 15 Si 1.86806 * 119.99774 * 179.97438 * 13 11 8 16 16 H 1.48503 * 109.46759 * 60.00236 * 15 13 11 17 17 H 1.48496 * 109.47149 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47323 * 300.00718 * 15 13 11 19 19 N 1.36459 * 107.04975 * 0.23151 * 5 4 3 20 20 C 1.46499 * 127.13594 * 179.77781 * 19 5 4 21 21 C 1.53002 * 109.46700 * 265.88211 * 20 19 5 22 22 C 1.50699 * 110.01675 * 56.00696 * 21 20 19 23 23 N 1.34779 * 120.00242 * 292.33353 * 22 21 20 24 24 O 1.21287 * 119.99904 * 112.33478 * 22 21 20 25 25 C 1.54266 * 110.03415 * 294.61314 * 21 20 19 26 26 C 1.54961 * 104.16275 * 217.13736 * 25 21 20 27 27 C 1.54885 * 102.77710 * 37.88608 * 26 25 21 28 28 C 1.53876 * 110.03280 * 177.39673 * 21 20 19 29 29 H 1.08997 * 109.47325 * 89.97546 * 1 2 3 30 30 H 1.09000 * 109.47253 * 209.97763 * 1 2 3 31 31 H 1.09004 * 109.46903 * 329.97842 * 1 2 3 32 32 H 1.09000 * 109.47468 * 290.12472 * 7 6 5 33 33 H 1.09006 * 109.47001 * 50.12741 * 7 6 5 34 34 H 1.08998 * 109.47152 * 170.11568 * 7 6 5 35 35 H 1.09007 * 109.46754 * 180.02562 * 10 8 6 36 36 H 1.08995 * 109.46851 * 299.99690 * 10 8 6 37 37 H 1.08994 * 109.47133 * 60.00099 * 10 8 6 38 38 H 0.97000 * 119.99787 * 179.97438 * 14 13 11 39 39 H 1.09003 * 109.47329 * 25.87650 * 20 19 5 40 40 H 1.09000 * 109.47597 * 145.88397 * 20 19 5 41 41 H 0.97001 * 119.99685 * 5.33099 * 23 22 21 42 42 H 0.96998 * 119.99933 * 185.33215 * 23 22 21 43 43 H 1.08994 * 110.48418 * 335.78704 * 25 21 20 44 44 H 1.09004 * 110.48155 * 98.42589 * 25 21 20 45 45 H 1.09007 * 110.72022 * 279.57336 * 26 25 21 46 46 H 1.09002 * 110.92427 * 156.30038 * 26 25 21 47 47 H 1.09002 * 110.48649 * 203.40355 * 27 26 25 48 48 H 1.09002 * 110.48708 * 80.76318 * 27 26 25 49 49 H 1.08996 * 110.03313 * 238.56940 * 28 21 20 50 50 H 1.08998 * 110.03115 * 0.02562 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2792 1.0494 0.0000 4 7 3.5128 0.6888 -0.0005 5 6 3.5945 -0.6208 -0.0004 6 7 4.7579 -1.3737 -0.0013 7 6 4.9215 -2.0915 1.2700 8 6 5.9287 -0.5332 -0.2855 9 1 6.0140 0.2410 0.4770 10 6 5.7660 0.1200 -1.6595 11 6 7.1721 -1.3846 -0.2776 12 1 7.0999 -2.4440 -0.0807 13 6 8.4019 -0.8109 -0.5218 14 7 8.4899 0.4792 -0.7610 15 14 9.9433 -1.8661 -0.5112 16 1 9.8275 -2.9219 -1.5491 17 1 11.1268 -1.0165 -0.7987 18 1 10.1010 -2.4989 0.8229 19 7 2.3173 -1.1013 -0.0049 20 6 1.9008 -2.5059 -0.0111 21 6 1.6597 -2.9599 -1.4521 22 6 2.8958 -2.7236 -2.2811 23 7 3.2983 -1.4652 -2.5474 24 8 3.5285 -3.6660 -2.7087 25 6 0.4646 -2.1930 -2.0549 26 6 -0.2558 -3.2451 -2.9356 27 6 -0.1264 -4.5405 -2.0965 28 6 1.2844 -4.4520 -1.4789 29 1 -0.3634 0.0004 -1.0276 30 1 -0.3634 -0.8902 0.5135 31 1 -0.3633 0.8898 0.5142 32 1 5.1453 -1.3787 2.0636 33 1 4.0001 -2.6230 1.5082 34 1 5.7401 -2.8056 1.1813 35 1 6.6349 0.7434 -1.8707 36 1 5.6808 -0.6541 -2.4220 37 1 4.8667 0.7358 -1.6649 38 1 9.3551 0.8828 -0.9324 39 1 2.6830 -3.1188 0.4369 40 1 0.9806 -2.6146 0.5629 41 1 2.8386 -0.7131 -2.1426 42 1 4.0476 -1.3117 -3.1439 43 1 -0.1981 -1.8382 -1.2657 44 1 0.8144 -1.3595 -2.6641 45 1 0.2486 -3.3547 -3.8957 46 1 -1.3034 -2.9808 -3.0793 47 1 -0.2083 -5.4192 -2.7363 48 1 -0.8846 -4.5654 -1.3138 49 1 1.9959 -5.0050 -2.0921 50 1 1.2737 -4.8525 -0.4652 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001460402056.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:03 Heat of formation + Delta-G solvation = 39.533615 kcal Electronic energy + Delta-G solvation = -32581.943658 eV Core-core repulsion = 28645.330076 eV Total energy + Delta-G solvation = -3936.613582 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -44.17487 -41.29859 -38.90798 -38.28281 -35.96804 -34.92566 -34.55982 -32.74438 -31.33055 -31.06604 -29.63851 -28.79900 -27.10712 -26.71405 -25.83006 -23.67248 -23.61137 -21.91729 -21.53416 -21.09223 -20.19547 -18.82237 -18.28762 -17.88711 -17.44875 -17.32107 -17.02743 -16.44019 -16.11528 -15.88392 -15.58293 -15.57129 -15.07939 -14.79865 -14.68908 -14.37437 -14.21607 -13.94981 -13.56124 -13.50554 -13.28472 -13.10312 -12.92840 -12.79064 -12.65267 -12.42808 -12.25694 -12.19017 -12.12448 -12.03062 -11.95805 -11.91620 -11.87155 -11.49301 -11.35539 -11.09734 -10.94506 -10.80775 -10.59693 -10.57409 -10.23713 -9.02088 -8.15194 -6.29177 0.84603 1.30003 1.40482 1.42449 1.49926 1.66549 1.93561 2.38239 2.52921 2.97421 3.15610 3.41185 3.45690 3.54658 3.64589 3.78793 3.94713 4.05546 4.15066 4.24361 4.35974 4.45609 4.47083 4.50402 4.58141 4.67790 4.73682 4.78333 4.80900 4.83471 4.88076 4.93719 5.04178 5.10568 5.11336 5.14062 5.19967 5.21690 5.27662 5.31361 5.41282 5.53902 5.61188 5.63802 5.77882 5.96131 6.01449 6.17637 6.40571 6.62226 6.79880 7.28932 7.39215 7.91995 8.90525 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.015170 B = 0.004605 C = 0.003982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.281654 B = 6079.377618 C = 7030.094574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.177 3.823 3 N -0.331 5.331 4 N -0.364 5.364 5 C 0.372 3.628 6 N -0.453 5.453 7 C 0.041 3.959 8 C 0.247 3.753 9 H -0.024 1.024 10 C -0.114 4.114 11 C -0.527 4.527 12 H 0.062 0.938 13 C 0.017 3.983 14 N -0.914 5.914 15 Si 0.962 3.038 16 H -0.276 1.276 17 H -0.284 1.284 18 H -0.267 1.267 19 N -0.483 5.483 20 C 0.117 3.883 21 C -0.089 4.089 22 C 0.528 3.472 23 N -0.834 5.834 24 O -0.585 6.585 25 C -0.120 4.120 26 C -0.122 4.122 27 C -0.113 4.113 28 C -0.112 4.112 29 H 0.106 0.894 30 H 0.113 0.887 31 H 0.100 0.900 32 H 0.019 0.981 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.057 0.943 36 H 0.026 0.974 37 H 0.035 0.965 38 H 0.263 0.737 39 H 0.094 0.906 40 H 0.157 0.843 41 H 0.395 0.605 42 H 0.392 0.608 43 H 0.121 0.879 44 H 0.053 0.947 45 H 0.042 0.958 46 H 0.099 0.901 47 H 0.067 0.933 48 H 0.100 0.900 49 H 0.060 0.940 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.648 -8.688 1.399 26.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.091 4.091 3 N -0.169 5.169 4 N -0.207 5.207 5 C 0.015 3.985 6 N -0.177 5.177 7 C -0.106 4.106 8 C 0.142 3.858 9 H -0.006 1.006 10 C -0.173 4.173 11 C -0.565 4.565 12 H 0.080 0.920 13 C -0.183 4.183 14 N -0.553 5.553 15 Si 0.787 3.213 16 H -0.201 1.201 17 H -0.209 1.209 18 H -0.192 1.192 19 N -0.181 5.181 20 C -0.005 4.005 21 C -0.093 4.093 22 C 0.314 3.686 23 N -0.396 5.396 24 O -0.465 6.465 25 C -0.158 4.158 26 C -0.160 4.160 27 C -0.150 4.150 28 C -0.150 4.150 29 H 0.124 0.876 30 H 0.131 0.869 31 H 0.119 0.881 32 H 0.038 0.962 33 H 0.101 0.899 34 H 0.100 0.900 35 H 0.076 0.924 36 H 0.045 0.955 37 H 0.053 0.947 38 H 0.072 0.928 39 H 0.113 0.887 40 H 0.174 0.826 41 H 0.225 0.775 42 H 0.223 0.777 43 H 0.139 0.861 44 H 0.072 0.928 45 H 0.061 0.939 46 H 0.117 0.883 47 H 0.086 0.914 48 H 0.118 0.882 49 H 0.079 0.921 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -23.811 -8.143 0.819 25.178 hybrid contribution 1.943 -0.355 0.173 1.983 sum -21.868 -8.498 0.991 23.482 Atomic orbital electron populations 1.20696 0.79898 1.06357 1.05670 1.25678 0.98149 0.81303 1.03961 1.73948 0.96564 1.26106 1.20298 1.74806 1.12460 1.08730 1.24712 1.22912 0.85807 0.89162 1.00578 1.59002 0.99694 1.27242 1.31751 1.22371 1.02863 0.97999 0.87362 1.18854 0.84359 0.89263 0.93353 1.00622 1.21647 1.00012 0.98548 0.97075 1.21293 0.91180 0.94921 1.49140 0.91971 1.25671 1.01903 0.96072 0.94614 1.70049 1.25422 1.11538 1.48256 0.85557 0.78485 0.78441 0.78806 1.20111 1.20914 1.19225 1.46517 1.04612 1.09155 1.57806 1.22424 1.04887 0.76898 0.96325 1.21901 0.93441 1.00308 0.93641 1.20832 0.86175 0.82128 0.79480 1.44199 1.36635 1.08162 1.50599 1.90664 1.57936 1.42952 1.54974 1.22909 0.94734 0.97435 1.00690 1.22518 1.01409 0.94714 0.97345 1.22357 0.95348 0.97598 0.99725 1.22203 0.98591 0.90842 1.03393 0.87572 0.86879 0.88133 0.96198 0.89900 0.89952 0.92436 0.95459 0.94659 0.92821 0.88736 0.82583 0.77462 0.77738 0.86144 0.92838 0.93933 0.88299 0.91399 0.88190 0.92135 0.88692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.73 8.37 71.24 0.60 -0.14 16 2 C 0.18 4.37 6.98 137.64 0.96 5.33 16 3 N -0.33 -11.88 12.18 -49.54 -0.60 -12.48 16 4 N -0.36 -15.66 9.52 -58.00 -0.55 -16.22 16 5 C 0.37 14.10 3.35 260.11 0.87 14.98 16 6 N -0.45 -19.31 4.30 -710.97 -3.06 -22.36 16 7 C 0.04 1.55 8.89 127.69 1.14 2.68 16 8 C 0.25 13.01 1.70 44.17 0.08 13.08 16 9 H -0.02 -1.45 7.99 -2.39 -0.02 -1.47 16 10 C -0.11 -5.95 8.05 71.98 0.58 -5.37 16 11 C -0.53 -29.29 7.99 25.60 0.20 -29.08 16 12 H 0.06 3.39 6.41 -2.91 -0.02 3.37 16 13 C 0.02 0.97 5.30 84.66 0.45 1.41 16 14 N -0.91 -54.04 11.32 21.45 0.24 -53.80 16 15 Si 0.96 44.60 29.54 68.60 2.03 46.63 16 16 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 17 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 18 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 19 N -0.48 -12.71 1.72 -514.85 -0.88 -13.59 16 20 C 0.12 2.16 4.42 86.38 0.38 2.55 16 21 C -0.09 -1.79 0.64 -52.20 -0.03 -1.83 16 22 C 0.53 17.15 6.44 87.66 0.56 17.72 16 23 N -0.83 -28.39 5.86 -173.53 -1.02 -29.41 16 24 O -0.59 -24.12 16.09 -3.05 -0.05 -24.17 16 25 C -0.12 -1.69 4.26 31.69 0.14 -1.56 16 26 C -0.12 -1.52 6.91 31.91 0.22 -1.30 16 27 C -0.11 -1.25 6.83 31.67 0.22 -1.03 16 28 C -0.11 -1.94 6.04 31.32 0.19 -1.75 16 29 H 0.11 0.80 6.81 -2.39 -0.02 0.78 16 30 H 0.11 0.41 6.90 -2.39 -0.02 0.39 16 31 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.02 0.78 8.12 -2.39 -0.02 0.76 16 33 H 0.08 2.39 5.73 -2.38 -0.01 2.38 16 34 H 0.08 3.23 6.46 -2.39 -0.02 3.21 16 35 H 0.06 3.33 6.07 -2.38 -0.01 3.31 16 36 H 0.03 1.36 6.34 -2.39 -0.02 1.34 16 37 H 0.03 1.75 5.89 -2.39 -0.01 1.73 16 38 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 39 H 0.09 2.02 5.80 -2.39 -0.01 2.01 16 40 H 0.16 1.24 7.30 -2.39 -0.02 1.23 16 41 H 0.39 12.99 5.17 -92.71 -0.48 12.51 16 42 H 0.39 14.92 7.15 -92.71 -0.66 14.25 16 43 H 0.12 0.84 4.53 -2.39 -0.01 0.83 16 44 H 0.05 0.97 7.00 -2.38 -0.02 0.95 16 45 H 0.04 0.74 8.14 -2.38 -0.02 0.72 16 46 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 47 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 48 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 49 H 0.06 1.53 6.44 -2.39 -0.02 1.52 16 50 H 0.09 1.18 7.67 -2.39 -0.02 1.16 16 Total: -1.00 -79.53 364.83 2.51 -77.02 By element: Atomic # 1 Polarization: 32.82 SS G_CDS: -0.14 Total: 32.68 kcal Atomic # 6 Polarization: 9.15 SS G_CDS: 6.55 Total: 15.70 kcal Atomic # 7 Polarization: -141.99 SS G_CDS: -5.87 Total: -147.86 kcal Atomic # 8 Polarization: -24.12 SS G_CDS: -0.05 Total: -24.17 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -79.53 2.51 -77.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460402056.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.556 kcal (2) G-P(sol) polarization free energy of solvation -79.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds