Wall clock time and date at job start Tue Mar 31 2020 19:35:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30288 * 126.34564 * 2 1 4 4 N 1.28527 * 110.05257 * 179.97438 * 3 2 1 5 5 C 1.31222 * 109.86021 * 359.74585 * 4 3 2 6 6 N 1.38582 * 126.47257 * 180.25719 * 5 4 3 7 7 C 1.46903 * 110.99786 * 110.95189 * 6 5 4 8 8 C 1.46900 * 111.00008 * 346.99501 * 6 5 4 9 9 H 1.09000 * 109.47265 * 310.00114 * 8 6 5 10 10 C 1.52998 * 109.46951 * 70.00420 * 8 6 5 11 11 C 1.50700 * 109.46734 * 189.99750 * 8 6 5 12 12 H 1.07998 * 120.00508 * 0.02562 * 11 8 6 13 13 C 1.37881 * 119.99543 * 179.97438 * 11 8 6 14 14 N 1.31519 * 119.99434 * 180.02562 * 13 11 8 15 15 Si 1.86799 * 120.00454 * 0.02562 * 13 11 8 16 16 H 1.48501 * 109.46926 * 89.99427 * 15 13 11 17 17 H 1.48497 * 109.47241 * 210.00060 * 15 13 11 18 18 H 1.48499 * 109.46851 * 329.99768 * 15 13 11 19 19 N 1.36451 * 107.05149 * 0.40089 * 5 4 3 20 20 C 1.46499 * 127.13701 * 179.87610 * 19 5 4 21 21 C 1.53001 * 109.46893 * 271.96810 * 20 19 5 22 22 C 1.50701 * 110.01516 * 65.50256 * 21 20 19 23 23 N 1.34775 * 119.99731 * 288.66896 * 22 21 20 24 24 O 1.21281 * 120.00372 * 108.67445 * 22 21 20 25 25 C 1.54259 * 110.03439 * 304.10500 * 21 20 19 26 26 C 1.54962 * 104.16191 * 217.13483 * 25 21 20 27 27 C 1.54887 * 102.77470 * 37.88999 * 26 25 21 28 28 C 1.53878 * 110.03115 * 186.88862 * 21 20 19 29 29 H 1.08992 * 109.46968 * 275.62302 * 1 2 3 30 30 H 1.08997 * 109.46828 * 35.62635 * 1 2 3 31 31 H 1.09005 * 109.46610 * 155.62155 * 1 2 3 32 32 H 1.08999 * 109.47295 * 66.57440 * 7 6 5 33 33 H 1.08998 * 109.46998 * 186.57586 * 7 6 5 34 34 H 1.09002 * 109.46893 * 306.56970 * 7 6 5 35 35 H 1.09003 * 109.47280 * 180.02562 * 10 8 6 36 36 H 1.09006 * 109.47011 * 299.99209 * 10 8 6 37 37 H 1.09000 * 109.47386 * 59.99768 * 10 8 6 38 38 H 0.97002 * 119.99690 * 180.02562 * 14 13 11 39 39 H 1.08999 * 109.46781 * 31.96732 * 20 19 5 40 40 H 1.08992 * 109.47233 * 151.96841 * 20 19 5 41 41 H 0.96997 * 120.00080 * 4.73061 * 23 22 21 42 42 H 0.97003 * 120.00282 * 184.72145 * 23 22 21 43 43 H 1.09001 * 110.48501 * 335.79005 * 25 21 20 44 44 H 1.09007 * 110.48290 * 98.42895 * 25 21 20 45 45 H 1.08998 * 110.72300 * 279.57662 * 26 25 21 46 46 H 1.09005 * 110.92172 * 156.29693 * 26 25 21 47 47 H 1.09003 * 110.48593 * 203.39907 * 27 26 25 48 48 H 1.09007 * 110.48600 * 80.76312 * 27 26 25 49 49 H 1.09001 * 110.03524 * 238.57321 * 28 21 20 50 50 H 1.09006 * 110.03250 * 359.97438 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2792 1.0494 0.0000 4 7 3.5129 0.6888 0.0005 5 6 3.5945 -0.6208 0.0064 6 7 4.7580 -1.3737 0.0138 7 6 4.9289 -2.0659 1.2981 8 6 5.9270 -0.5391 -0.2942 9 1 5.7304 0.0438 -1.1940 10 6 6.2009 0.4070 0.8766 11 6 7.1283 -1.4207 -0.5191 12 1 7.0329 -2.4937 -0.4416 13 6 8.3491 -0.8575 -0.8251 14 7 9.3974 -1.6270 -1.0219 15 14 8.5142 0.9983 -0.9600 16 1 8.8664 1.5617 0.3680 17 1 9.5813 1.3305 -1.9377 18 1 7.2258 1.5778 -1.4176 19 7 2.3174 -1.1014 0.0006 20 6 1.9009 -2.5059 0.0012 21 6 1.8112 -3.0119 -1.4399 22 6 3.1801 -3.0200 -2.0699 23 7 3.7825 -1.8571 -2.3879 24 8 3.7397 -4.0731 -2.2909 25 6 0.8588 -2.1144 -2.2567 26 6 0.1214 -3.1011 -3.1970 27 6 -0.0859 -4.3433 -2.2954 28 6 1.2111 -4.4286 -1.4647 29 1 -0.3633 0.1007 1.0227 30 1 -0.3633 0.8353 -0.5986 31 1 -0.3633 -0.9361 -0.4242 32 1 4.1449 -2.8141 1.4148 33 1 5.9032 -2.5541 1.3209 34 1 4.8656 -1.3432 2.1116 35 1 7.0680 1.0266 0.6480 36 1 5.3320 1.0447 1.0394 37 1 6.3975 -0.1759 1.7765 38 1 10.2563 -1.2308 -1.2367 39 1 2.6306 -3.1009 0.5505 40 1 0.9255 -2.5954 0.4791 41 1 3.3661 -1.0141 -2.1493 42 1 4.6325 -1.8630 -2.8552 43 1 0.1495 -1.6125 -1.5986 44 1 1.4251 -1.3851 -2.8361 45 1 0.7410 -3.3484 -4.0589 46 1 -0.8368 -2.6915 -3.5168 47 1 -0.2093 -5.2396 -2.9033 48 1 -0.9480 -4.2019 -1.6434 49 1 1.9096 -5.1219 -1.9332 50 1 0.9843 -4.7559 -0.4500 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001460402059.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:09 Heat of formation + Delta-G solvation = 74.396028 kcal Electronic energy + Delta-G solvation = -32630.039187 eV Core-core repulsion = 28694.937352 eV Total energy + Delta-G solvation = -3935.101835 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.98786 -40.21760 -37.72864 -37.13748 -34.91166 -33.18107 -32.87968 -31.76645 -30.43205 -29.61042 -28.85950 -27.69415 -25.81758 -25.35256 -24.81314 -22.69832 -21.90199 -21.04915 -20.62699 -19.61261 -18.87051 -17.62528 -16.85556 -16.68323 -16.25261 -16.05823 -15.59546 -15.24419 -15.00144 -14.85857 -14.42558 -13.99371 -13.96293 -13.80253 -13.59508 -13.45266 -12.99217 -12.67747 -12.63367 -12.39420 -12.19812 -11.94489 -11.78031 -11.67824 -11.41208 -11.34035 -11.25762 -11.18480 -11.10956 -10.89454 -10.73532 -10.57521 -10.25266 -10.02982 -9.89366 -9.60733 -9.49915 -9.23395 -9.10432 -8.92135 -8.61390 -7.65514 -6.12196 -4.13206 1.93372 2.37276 2.94907 3.10501 3.27697 3.39361 3.43026 3.72637 4.13178 4.30142 4.31515 4.37165 4.42561 4.48249 4.53344 4.78215 4.91127 4.97524 5.17176 5.18771 5.21108 5.26845 5.28492 5.37325 5.41139 5.44094 5.56770 5.65672 5.69146 5.72468 5.83850 5.84180 5.93982 5.95363 6.03609 6.09554 6.21379 6.26475 6.42047 6.54616 6.56256 6.72078 6.97115 7.07937 7.27975 7.46468 7.55767 7.77208 7.85087 8.50863 8.67313 8.92679 9.07320 9.47887 10.99689 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014951 B = 0.004958 C = 0.004211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.383386 B = 5645.639673 C = 6648.403576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.153 3.847 3 N -0.285 5.285 4 N -0.322 5.322 5 C 0.375 3.625 6 N -0.435 5.435 7 C 0.032 3.968 8 C 0.204 3.796 9 H 0.048 0.952 10 C -0.189 4.189 11 C -0.512 4.512 12 H 0.084 0.916 13 C 0.078 3.922 14 N -0.893 5.893 15 Si 0.882 3.118 16 H -0.279 1.279 17 H -0.297 1.297 18 H -0.263 1.263 19 N -0.487 5.487 20 C 0.125 3.875 21 C -0.098 4.098 22 C 0.536 3.464 23 N -0.823 5.823 24 O -0.541 6.541 25 C -0.127 4.127 26 C -0.123 4.123 27 C -0.121 4.121 28 C -0.111 4.111 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.049 0.951 33 H 0.103 0.897 34 H 0.033 0.967 35 H 0.046 0.954 36 H 0.059 0.941 37 H 0.048 0.952 38 H 0.265 0.735 39 H 0.103 0.897 40 H 0.102 0.898 41 H 0.390 0.610 42 H 0.409 0.591 43 H 0.086 0.914 44 H 0.069 0.931 45 H 0.068 0.932 46 H 0.070 0.930 47 H 0.069 0.931 48 H 0.066 0.934 49 H 0.096 0.904 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.667 -2.374 0.937 22.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.114 4.114 3 N -0.125 5.125 4 N -0.166 5.166 5 C 0.020 3.980 6 N -0.158 5.158 7 C -0.115 4.115 8 C 0.098 3.902 9 H 0.066 0.934 10 C -0.247 4.247 11 C -0.550 4.550 12 H 0.102 0.898 13 C -0.125 4.125 14 N -0.530 5.530 15 Si 0.712 3.288 16 H -0.206 1.206 17 H -0.225 1.225 18 H -0.188 1.188 19 N -0.184 5.184 20 C 0.001 3.999 21 C -0.102 4.102 22 C 0.319 3.681 23 N -0.386 5.386 24 O -0.418 6.418 25 C -0.165 4.165 26 C -0.161 4.161 27 C -0.159 4.159 28 C -0.149 4.149 29 H 0.100 0.900 30 H 0.110 0.890 31 H 0.099 0.901 32 H 0.068 0.932 33 H 0.122 0.878 34 H 0.051 0.949 35 H 0.065 0.935 36 H 0.078 0.922 37 H 0.068 0.932 38 H 0.075 0.925 39 H 0.122 0.878 40 H 0.120 0.880 41 H 0.220 0.780 42 H 0.241 0.759 43 H 0.104 0.896 44 H 0.088 0.912 45 H 0.087 0.913 46 H 0.089 0.911 47 H 0.088 0.912 48 H 0.085 0.915 49 H 0.114 0.886 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -21.818 -2.060 0.448 21.919 hybrid contribution 0.311 0.647 0.552 0.905 sum -21.507 -1.413 1.000 21.576 Atomic orbital electron populations 1.20375 0.84461 1.04012 1.03871 1.24571 0.96228 0.82609 1.07989 1.73985 0.96923 1.24130 1.17450 1.74882 1.10791 1.07205 1.23734 1.23310 0.85234 0.89444 0.99965 1.59242 0.99124 1.27327 1.30153 1.22446 1.04004 0.97304 0.87722 1.19736 0.85964 0.90399 0.94135 0.93447 1.22861 1.00949 1.00357 1.00571 1.20813 0.90562 0.94924 1.48693 0.89755 1.24819 0.95582 0.97634 0.94502 1.69874 1.00420 1.35170 1.47541 0.86948 0.77947 0.86536 0.77378 1.20623 1.22482 1.18779 1.46339 1.06179 1.07787 1.58141 1.22002 1.02856 0.78646 0.96376 1.21835 0.95018 0.98501 0.94849 1.19795 0.86451 0.84102 0.77755 1.43841 1.26266 1.07734 1.60709 1.90700 1.65762 1.30959 1.54375 1.22861 0.97883 0.97462 0.98250 1.22499 1.00190 0.95363 0.98018 1.22352 0.97160 0.98332 0.98031 1.22176 0.97379 0.94134 1.01212 0.90045 0.88955 0.90052 0.93226 0.87847 0.94883 0.93509 0.92224 0.93249 0.92476 0.87846 0.87954 0.78021 0.75911 0.89554 0.91196 0.91329 0.91136 0.91237 0.91540 0.88554 0.91087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.52 9.62 36.01 0.35 -0.18 16 2 C 0.15 1.99 7.34 -154.02 -1.13 0.86 16 3 N -0.29 -4.88 12.18 32.99 0.40 -4.48 16 4 N -0.32 -6.23 9.31 30.32 0.28 -5.95 16 5 C 0.38 6.54 3.70 -318.87 -1.18 5.36 16 6 N -0.44 -8.33 2.99 -176.08 -0.53 -8.86 16 7 C 0.03 0.57 8.39 60.07 0.50 1.08 16 8 C 0.20 4.63 1.61 -68.87 -0.11 4.52 16 9 H 0.05 1.16 7.01 -51.93 -0.36 0.79 16 10 C -0.19 -4.22 7.89 37.16 0.29 -3.92 16 11 C -0.51 -13.57 8.39 -34.44 -0.29 -13.86 16 12 H 0.08 2.46 7.43 -52.49 -0.39 2.07 16 13 C 0.08 2.16 5.45 -17.82 -0.10 2.06 16 14 N -0.89 -26.56 13.96 55.43 0.77 -25.79 16 15 Si 0.88 21.83 24.37 -169.99 -4.14 17.69 16 16 H -0.28 -6.84 6.87 56.52 0.39 -6.45 16 17 H -0.30 -7.40 7.11 56.52 0.40 -7.00 16 18 H -0.26 -6.40 6.53 56.52 0.37 -6.03 16 19 N -0.49 -6.51 1.97 -114.09 -0.22 -6.73 16 20 C 0.12 1.34 4.49 -4.04 -0.02 1.32 16 21 C -0.10 -1.10 0.64 -154.54 -0.10 -1.20 16 22 C 0.54 8.58 6.27 -10.99 -0.07 8.51 16 23 N -0.82 -13.55 6.07 31.22 0.19 -13.36 16 24 O -0.54 -10.76 16.14 5.56 0.09 -10.67 16 25 C -0.13 -1.20 4.90 -25.04 -0.12 -1.32 16 26 C -0.12 -1.02 6.91 -24.70 -0.17 -1.19 16 27 C -0.12 -0.92 6.83 -25.08 -0.17 -1.10 16 28 C -0.11 -1.09 6.03 -25.61 -0.15 -1.25 16 29 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.08 0.45 4.68 -51.93 -0.24 0.21 16 32 H 0.05 0.74 5.84 -51.93 -0.30 0.44 16 33 H 0.10 2.03 6.64 -51.93 -0.34 1.69 16 34 H 0.03 0.57 6.83 -51.93 -0.35 0.22 16 35 H 0.05 1.10 3.27 -51.93 -0.17 0.93 16 36 H 0.06 1.30 5.90 -51.93 -0.31 0.99 16 37 H 0.05 1.06 6.57 -51.93 -0.34 0.71 16 38 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 39 H 0.10 1.23 5.73 -51.93 -0.30 0.93 16 40 H 0.10 0.74 7.62 -51.93 -0.40 0.35 16 41 H 0.39 6.29 5.29 -40.82 -0.22 6.07 16 42 H 0.41 7.40 8.93 -40.82 -0.36 7.04 16 43 H 0.09 0.65 3.73 -51.93 -0.19 0.45 16 44 H 0.07 0.78 6.75 -51.92 -0.35 0.43 16 45 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 46 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 47 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 49 H 0.10 1.22 6.48 -51.93 -0.34 0.88 16 50 H 0.07 0.57 7.67 -51.93 -0.40 0.17 16 LS Contribution 359.50 15.07 5.42 5.42 Total: -1.00 -33.03 359.50 -7.30 -40.33 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: -7.09 Total: 12.71 kcal Atomic # 6 Polarization: 2.17 SS G_CDS: -2.47 Total: -0.30 kcal Atomic # 7 Polarization: -66.06 SS G_CDS: 0.90 Total: -65.17 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.09 Total: -10.67 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.14 Total: 17.69 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.03 -7.30 -40.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460402059.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.724 kcal (2) G-P(sol) polarization free energy of solvation -33.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds