Wall clock time and date at job start Tue Mar 31 2020 19:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30288 * 126.34564 * 2 1 4 4 N 1.28527 * 110.05257 * 179.97438 * 3 2 1 5 5 C 1.31222 * 109.86021 * 359.74585 * 4 3 2 6 6 N 1.38582 * 126.47257 * 180.25719 * 5 4 3 7 7 C 1.46903 * 110.99786 * 110.95189 * 6 5 4 8 8 C 1.46900 * 111.00008 * 346.99501 * 6 5 4 9 9 H 1.09000 * 109.47265 * 310.00114 * 8 6 5 10 10 C 1.52998 * 109.46951 * 70.00420 * 8 6 5 11 11 C 1.50700 * 109.46734 * 189.99750 * 8 6 5 12 12 H 1.07998 * 120.00508 * 0.02562 * 11 8 6 13 13 C 1.37881 * 119.99543 * 179.97438 * 11 8 6 14 14 N 1.31519 * 119.99434 * 180.02562 * 13 11 8 15 15 Si 1.86799 * 120.00454 * 0.02562 * 13 11 8 16 16 H 1.48501 * 109.46926 * 89.99427 * 15 13 11 17 17 H 1.48497 * 109.47241 * 210.00060 * 15 13 11 18 18 H 1.48499 * 109.46851 * 329.99768 * 15 13 11 19 19 N 1.36451 * 107.05149 * 0.40089 * 5 4 3 20 20 C 1.46499 * 127.13701 * 179.87610 * 19 5 4 21 21 C 1.53001 * 109.46893 * 271.96810 * 20 19 5 22 22 C 1.50701 * 110.01516 * 65.50256 * 21 20 19 23 23 N 1.34775 * 119.99731 * 288.66896 * 22 21 20 24 24 O 1.21281 * 120.00372 * 108.67445 * 22 21 20 25 25 C 1.54259 * 110.03439 * 304.10500 * 21 20 19 26 26 C 1.54962 * 104.16191 * 217.13483 * 25 21 20 27 27 C 1.54887 * 102.77470 * 37.88999 * 26 25 21 28 28 C 1.53878 * 110.03115 * 186.88862 * 21 20 19 29 29 H 1.08992 * 109.46968 * 275.62302 * 1 2 3 30 30 H 1.08997 * 109.46828 * 35.62635 * 1 2 3 31 31 H 1.09005 * 109.46610 * 155.62155 * 1 2 3 32 32 H 1.08999 * 109.47295 * 66.57440 * 7 6 5 33 33 H 1.08998 * 109.46998 * 186.57586 * 7 6 5 34 34 H 1.09002 * 109.46893 * 306.56970 * 7 6 5 35 35 H 1.09003 * 109.47280 * 180.02562 * 10 8 6 36 36 H 1.09006 * 109.47011 * 299.99209 * 10 8 6 37 37 H 1.09000 * 109.47386 * 59.99768 * 10 8 6 38 38 H 0.97002 * 119.99690 * 180.02562 * 14 13 11 39 39 H 1.08999 * 109.46781 * 31.96732 * 20 19 5 40 40 H 1.08992 * 109.47233 * 151.96841 * 20 19 5 41 41 H 0.96997 * 120.00080 * 4.73061 * 23 22 21 42 42 H 0.97003 * 120.00282 * 184.72145 * 23 22 21 43 43 H 1.09001 * 110.48501 * 335.79005 * 25 21 20 44 44 H 1.09007 * 110.48290 * 98.42895 * 25 21 20 45 45 H 1.08998 * 110.72300 * 279.57662 * 26 25 21 46 46 H 1.09005 * 110.92172 * 156.29693 * 26 25 21 47 47 H 1.09003 * 110.48593 * 203.39907 * 27 26 25 48 48 H 1.09007 * 110.48600 * 80.76312 * 27 26 25 49 49 H 1.09001 * 110.03524 * 238.57321 * 28 21 20 50 50 H 1.09006 * 110.03250 * 359.97438 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2792 1.0494 0.0000 4 7 3.5129 0.6888 0.0005 5 6 3.5945 -0.6208 0.0064 6 7 4.7580 -1.3737 0.0138 7 6 4.9289 -2.0659 1.2981 8 6 5.9270 -0.5391 -0.2942 9 1 5.7304 0.0438 -1.1940 10 6 6.2009 0.4070 0.8766 11 6 7.1283 -1.4207 -0.5191 12 1 7.0329 -2.4937 -0.4416 13 6 8.3491 -0.8575 -0.8251 14 7 9.3974 -1.6270 -1.0219 15 14 8.5142 0.9983 -0.9600 16 1 8.8664 1.5617 0.3680 17 1 9.5813 1.3305 -1.9377 18 1 7.2258 1.5778 -1.4176 19 7 2.3174 -1.1014 0.0006 20 6 1.9009 -2.5059 0.0012 21 6 1.8112 -3.0119 -1.4399 22 6 3.1801 -3.0200 -2.0699 23 7 3.7825 -1.8571 -2.3879 24 8 3.7397 -4.0731 -2.2909 25 6 0.8588 -2.1144 -2.2567 26 6 0.1214 -3.1011 -3.1970 27 6 -0.0859 -4.3433 -2.2954 28 6 1.2111 -4.4286 -1.4647 29 1 -0.3633 0.1007 1.0227 30 1 -0.3633 0.8353 -0.5986 31 1 -0.3633 -0.9361 -0.4242 32 1 4.1449 -2.8141 1.4148 33 1 5.9032 -2.5541 1.3209 34 1 4.8656 -1.3432 2.1116 35 1 7.0680 1.0266 0.6480 36 1 5.3320 1.0447 1.0394 37 1 6.3975 -0.1759 1.7765 38 1 10.2563 -1.2308 -1.2367 39 1 2.6306 -3.1009 0.5505 40 1 0.9255 -2.5954 0.4791 41 1 3.3661 -1.0141 -2.1493 42 1 4.6325 -1.8630 -2.8552 43 1 0.1495 -1.6125 -1.5986 44 1 1.4251 -1.3851 -2.8361 45 1 0.7410 -3.3484 -4.0589 46 1 -0.8368 -2.6915 -3.5168 47 1 -0.2093 -5.2396 -2.9033 48 1 -0.9480 -4.2019 -1.6434 49 1 1.9096 -5.1219 -1.9332 50 1 0.9843 -4.7559 -0.4500 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001460402059.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:08 Heat of formation + Delta-G solvation = 51.041837 kcal Electronic energy + Delta-G solvation = -32631.051901 eV Core-core repulsion = 28694.937352 eV Total energy + Delta-G solvation = -3936.114548 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -44.17184 -41.30286 -39.29626 -38.27385 -35.95641 -34.83862 -34.49230 -32.92735 -31.69624 -31.01066 -29.62313 -28.79299 -27.32003 -26.73291 -26.28906 -23.81533 -23.34388 -21.95177 -21.54375 -21.09889 -20.03319 -18.93043 -18.49988 -17.86560 -17.42900 -17.34008 -17.22988 -16.72253 -16.06722 -15.87932 -15.72042 -15.43121 -15.08972 -14.98719 -14.77761 -14.54995 -14.35418 -14.16899 -13.62668 -13.54973 -13.48416 -13.27698 -13.24792 -12.91062 -12.80547 -12.58554 -12.31733 -12.21341 -12.06387 -11.98781 -11.94587 -11.89718 -11.56742 -11.47195 -11.34858 -11.06901 -10.98585 -10.85387 -10.75853 -10.54654 -10.26728 -9.07992 -8.32120 -6.35247 0.79330 1.26299 1.27403 1.34110 1.43571 1.71055 1.89041 2.27448 2.57573 2.86124 3.03307 3.40502 3.45906 3.52033 3.60599 3.75054 3.91644 4.00171 4.09721 4.20938 4.30869 4.34202 4.37719 4.46310 4.46874 4.54113 4.58607 4.66613 4.76210 4.79308 4.79818 4.87448 4.91266 4.95421 5.03581 5.08739 5.10242 5.13512 5.22786 5.27071 5.30487 5.32008 5.52420 5.53643 5.75920 5.84394 5.85629 6.17868 6.48504 6.56640 6.70524 7.28520 7.35826 7.85586 8.83694 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014951 B = 0.004958 C = 0.004211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.383386 B = 5645.639673 C = 6648.403576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.185 3.815 3 N -0.328 5.328 4 N -0.357 5.357 5 C 0.359 3.641 6 N -0.440 5.440 7 C 0.035 3.965 8 C 0.217 3.783 9 H 0.032 0.968 10 C -0.180 4.180 11 C -0.499 4.499 12 H 0.046 0.954 13 C 0.027 3.973 14 N -0.939 5.939 15 Si 0.939 3.061 16 H -0.271 1.271 17 H -0.298 1.298 18 H -0.257 1.257 19 N -0.477 5.477 20 C 0.119 3.881 21 C -0.089 4.089 22 C 0.528 3.472 23 N -0.824 5.824 24 O -0.590 6.590 25 C -0.123 4.123 26 C -0.123 4.123 27 C -0.113 4.113 28 C -0.111 4.111 29 H 0.106 0.894 30 H 0.104 0.896 31 H 0.111 0.889 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.037 0.963 35 H 0.035 0.965 36 H 0.068 0.932 37 H 0.052 0.948 38 H 0.266 0.734 39 H 0.092 0.908 40 H 0.158 0.842 41 H 0.393 0.607 42 H 0.394 0.606 43 H 0.117 0.883 44 H 0.048 0.952 45 H 0.042 0.958 46 H 0.097 0.903 47 H 0.068 0.932 48 H 0.101 0.899 49 H 0.059 0.941 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.625 -1.617 2.197 27.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.083 4.083 3 N -0.167 5.167 4 N -0.201 5.201 5 C 0.002 3.998 6 N -0.162 5.162 7 C -0.112 4.112 8 C 0.110 3.890 9 H 0.050 0.950 10 C -0.238 4.238 11 C -0.537 4.537 12 H 0.064 0.936 13 C -0.171 4.171 14 N -0.579 5.579 15 Si 0.767 3.233 16 H -0.197 1.197 17 H -0.225 1.225 18 H -0.182 1.182 19 N -0.174 5.174 20 C -0.003 4.003 21 C -0.094 4.094 22 C 0.313 3.687 23 N -0.383 5.383 24 O -0.470 6.470 25 C -0.160 4.160 26 C -0.160 4.160 27 C -0.150 4.150 28 C -0.149 4.149 29 H 0.124 0.876 30 H 0.122 0.878 31 H 0.129 0.871 32 H 0.098 0.902 33 H 0.093 0.907 34 H 0.055 0.945 35 H 0.053 0.947 36 H 0.087 0.913 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.110 0.890 40 H 0.176 0.824 41 H 0.223 0.777 42 H 0.224 0.776 43 H 0.135 0.865 44 H 0.067 0.933 45 H 0.061 0.939 46 H 0.115 0.885 47 H 0.087 0.913 48 H 0.120 0.880 49 H 0.078 0.922 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -26.832 -1.287 1.723 26.918 hybrid contribution 1.734 0.325 0.140 1.770 sum -25.098 -0.962 1.863 25.185 Atomic orbital electron populations 1.20743 0.79992 1.06152 1.06016 1.25642 0.98091 0.81189 1.03358 1.73924 0.96523 1.25894 1.20324 1.74735 1.12632 1.08261 1.24487 1.22938 0.85850 0.89247 1.01738 1.59023 0.98946 1.27122 1.31144 1.22419 1.03589 0.97833 0.87357 1.19299 0.86025 0.89832 0.93848 0.95008 1.22741 1.00723 1.00065 1.00289 1.20936 0.92100 0.93685 1.47024 0.93550 1.25511 0.95397 1.01614 0.94608 1.70004 1.01093 1.37061 1.49724 0.86011 0.77905 0.81753 0.77589 1.19703 1.22534 1.18180 1.46433 1.04624 1.09082 1.57215 1.22369 1.05265 0.76724 0.95960 1.21876 0.92030 1.00372 0.95092 1.20768 0.88135 0.82908 0.76859 1.43931 1.25661 1.08338 1.60418 1.90675 1.67532 1.32458 1.56375 1.22911 0.97650 0.96960 0.98472 1.22515 1.00773 0.95624 0.97105 1.22365 0.96835 0.97864 0.97944 1.22200 0.97672 0.92088 1.02973 0.87585 0.87766 0.87052 0.90197 0.90708 0.94468 0.94658 0.91338 0.92884 0.92442 0.88973 0.82444 0.77672 0.77626 0.86483 0.93338 0.93939 0.88458 0.91307 0.88045 0.92193 0.88397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.64 9.62 71.24 0.69 0.05 16 2 C 0.19 4.07 7.34 137.64 1.01 5.08 16 3 N -0.33 -10.52 12.18 -49.54 -0.60 -11.13 16 4 N -0.36 -13.52 9.31 -58.00 -0.54 -14.06 16 5 C 0.36 12.19 3.70 260.11 0.96 13.15 16 6 N -0.44 -17.11 2.99 -711.00 -2.13 -19.24 16 7 C 0.04 1.25 8.39 127.69 1.07 2.32 16 8 C 0.22 10.15 1.61 44.17 0.07 10.22 16 9 H 0.03 1.60 7.01 -2.39 -0.02 1.58 16 10 C -0.18 -8.05 7.89 71.98 0.57 -7.48 16 11 C -0.50 -27.76 8.39 25.60 0.21 -27.55 16 12 H 0.05 2.89 7.43 -2.91 -0.02 2.87 16 13 C 0.03 1.58 5.45 84.65 0.46 2.04 16 14 N -0.94 -58.30 13.96 21.45 0.30 -58.00 16 15 Si 0.94 46.29 24.37 68.60 1.67 47.96 16 16 H -0.27 -12.89 6.87 99.48 0.68 -12.20 16 17 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 18 H -0.26 -12.34 6.53 99.48 0.65 -11.69 16 19 N -0.48 -11.36 1.97 -514.86 -1.01 -12.37 16 20 C 0.12 2.09 4.49 86.38 0.39 2.47 16 21 C -0.09 -1.81 0.64 -52.20 -0.03 -1.84 16 22 C 0.53 17.24 6.27 87.66 0.55 17.79 16 23 N -0.82 -28.23 6.07 -173.53 -1.05 -29.28 16 24 O -0.59 -24.76 16.14 -3.03 -0.05 -24.81 16 25 C -0.12 -1.87 4.90 31.69 0.16 -1.72 16 26 C -0.12 -1.62 6.91 31.91 0.22 -1.40 16 27 C -0.11 -1.25 6.83 31.67 0.22 -1.03 16 28 C -0.11 -1.89 6.03 31.32 0.19 -1.70 16 29 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.11 0.35 4.68 -2.38 -0.01 0.33 16 32 H 0.08 2.32 5.84 -2.39 -0.01 2.31 16 33 H 0.07 3.08 6.64 -2.39 -0.02 3.07 16 34 H 0.04 1.27 6.83 -2.39 -0.02 1.26 16 35 H 0.03 1.64 3.27 -2.39 -0.01 1.64 16 36 H 0.07 2.97 5.90 -2.38 -0.01 2.95 16 37 H 0.05 2.28 6.57 -2.39 -0.02 2.27 16 38 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 39 H 0.09 1.91 5.73 -2.39 -0.01 1.89 16 40 H 0.16 1.13 7.62 -2.39 -0.02 1.11 16 41 H 0.39 12.87 5.29 -92.71 -0.49 12.38 16 42 H 0.39 15.40 8.93 -92.71 -0.83 14.57 16 43 H 0.12 1.02 3.73 -2.39 -0.01 1.01 16 44 H 0.05 0.98 6.75 -2.38 -0.02 0.96 16 45 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 46 H 0.10 0.81 8.14 -2.38 -0.02 0.79 16 47 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 48 H 0.10 0.50 8.14 -2.38 -0.02 0.48 16 49 H 0.06 1.51 6.48 -2.39 -0.02 1.49 16 50 H 0.10 1.13 7.67 -2.38 -0.02 1.11 16 Total: -1.00 -79.32 359.50 2.92 -76.39 By element: Atomic # 1 Polarization: 34.50 SS G_CDS: -0.39 Total: 34.11 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: 6.73 Total: 10.42 kcal Atomic # 7 Polarization: -139.04 SS G_CDS: -5.04 Total: -144.07 kcal Atomic # 8 Polarization: -24.76 SS G_CDS: -0.05 Total: -24.81 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 1.67 Total: 47.96 kcal Total: -79.32 2.92 -76.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460402059.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.435 kcal (2) G-P(sol) polarization free energy of solvation -79.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds