Wall clock time and date at job start Tue Mar 31 2020 20:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47242 * 2 1 4 4 C 1.52998 * 109.46871 * 119.99968 * 2 1 3 5 5 H 1.09003 * 109.47147 * 299.99604 * 4 2 1 6 6 C 1.52994 * 109.47480 * 60.00190 * 4 2 1 7 7 N 1.46496 * 109.47562 * 175.00009 * 6 4 2 8 8 C 1.34780 * 120.00515 * 179.97438 * 7 6 4 9 9 O 1.21283 * 119.99260 * 359.97438 * 8 7 6 10 10 C 1.50698 * 120.00451 * 180.02562 * 8 7 6 11 11 H 1.08997 * 109.45803 * 59.96619 * 10 8 7 12 12 C 1.53112 * 109.45374 * 299.99800 * 10 8 7 13 13 C 1.53427 * 109.55881 * 169.93148 * 12 10 8 14 14 C 1.50551 * 108.35707 * 49.82119 * 13 12 10 15 15 N 1.32911 * 129.17113 * 163.35409 * 14 13 12 16 16 N 1.29015 * 108.63666 * 180.23885 * 15 14 13 17 17 N 1.29110 * 110.25912 * 359.97438 * 16 15 14 18 18 C 1.46499 * 126.00228 * 179.97438 * 17 16 15 19 19 C 1.34386 * 107.98460 * 359.93129 * 17 16 15 20 20 C 1.50541 * 129.25214 * 180.12813 * 19 17 16 21 21 N 1.46503 * 109.46920 * 180.02562 * 4 2 1 22 22 C 1.36935 * 120.00217 * 84.99994 * 21 4 2 23 23 H 1.07998 * 120.00049 * 0.02562 * 22 21 4 24 24 C 1.38810 * 120.00089 * 179.97438 * 22 21 4 25 25 N 1.31620 * 119.99889 * 179.97438 * 24 22 21 26 26 Si 1.86798 * 120.00020 * 0.02562 * 24 22 21 27 27 H 1.48503 * 109.47409 * 89.99767 * 26 24 22 28 28 H 1.48504 * 109.47400 * 209.99485 * 26 24 22 29 29 H 1.48504 * 109.47040 * 329.99870 * 26 24 22 30 30 H 1.09005 * 109.47132 * 299.99786 * 1 2 3 31 31 H 1.09004 * 109.47237 * 60.00036 * 1 2 3 32 32 H 1.08998 * 109.47572 * 180.02562 * 1 2 3 33 33 H 1.08993 * 109.46944 * 239.99793 * 2 1 3 34 34 H 1.09001 * 109.47436 * 180.02562 * 3 2 1 35 35 H 1.09004 * 109.46975 * 300.00124 * 3 2 1 36 36 H 1.09003 * 109.47400 * 60.00014 * 3 2 1 37 37 H 1.08996 * 109.47204 * 54.99214 * 6 4 2 38 38 H 1.09001 * 109.46959 * 294.99733 * 6 4 2 39 39 H 0.96998 * 119.99995 * 359.97438 * 7 6 4 40 40 H 1.09002 * 109.45470 * 289.95632 * 12 10 8 41 41 H 1.09000 * 109.45531 * 49.91582 * 12 10 8 42 42 H 1.08996 * 109.68841 * 169.51311 * 13 12 10 43 43 H 1.08991 * 109.69309 * 290.09488 * 13 12 10 44 44 H 1.09001 * 109.47165 * 270.00289 * 18 17 16 45 45 H 1.08999 * 109.47646 * 30.00617 * 18 17 16 46 46 H 1.09008 * 109.46730 * 150.00443 * 18 17 16 47 47 H 1.08993 * 109.69338 * 43.89039 * 20 19 17 48 48 H 1.08995 * 109.72859 * 283.32174 * 20 19 17 49 49 H 0.97002 * 119.99858 * 264.99729 * 21 4 2 50 50 H 0.97006 * 119.99693 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 1.2492 5 1 1.6766 -0.2073 2.1392 6 6 1.5300 -2.1637 1.2493 7 7 2.1141 -2.8882 2.3807 8 6 1.8052 -4.1845 2.5828 9 8 1.0433 -4.7509 1.8281 10 6 2.4056 -4.9295 3.7470 11 1 2.1175 -4.4414 4.6780 12 6 3.9315 -4.9280 3.6212 13 6 4.5544 -5.4592 4.9188 14 6 3.8729 -6.7530 5.2769 15 7 4.2639 -7.7022 6.1211 16 7 3.3808 -8.6428 6.1216 17 7 2.4190 -8.3534 5.3105 18 6 1.2389 -9.1797 5.0444 19 6 2.6902 -7.1606 4.7540 20 6 1.8917 -6.3752 3.7481 21 7 3.5050 -0.7207 1.2496 22 6 4.1892 0.3542 1.7510 23 1 3.6488 1.2015 2.1467 24 6 5.5773 0.3545 1.7518 25 7 6.2349 1.3879 2.2334 26 14 6.5119 -1.1113 1.0681 27 1 6.7602 -0.9076 -0.3818 28 1 7.8092 -1.2462 1.7782 29 1 5.7095 -2.3453 1.2643 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 1.8183 -2.6510 0.3179 38 1 0.4437 -2.1650 1.3389 39 1 2.7231 -2.4350 2.9845 40 1 4.2278 -5.5659 2.7885 41 1 4.2799 -3.9109 3.4412 42 1 5.6198 -5.6348 4.7696 43 1 4.4097 -4.7340 5.7194 44 1 1.4481 -9.8557 4.2153 45 1 0.9938 -9.7604 5.9337 46 1 0.3966 -8.5377 4.7862 47 1 0.8373 -6.3902 4.0237 48 1 2.0184 -6.8104 2.7569 49 1 3.9903 -1.4819 0.8946 50 1 7.2050 1.3882 2.2336 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482549418.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:38 Heat of formation + Delta-G solvation = 55.197617 kcal Electronic energy + Delta-G solvation = -29863.962708 eV Core-core repulsion = 25928.028368 eV Total energy + Delta-G solvation = -3935.934340 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -43.57867 -40.01176 -37.66014 -36.62409 -35.10952 -34.07761 -33.18921 -31.03953 -30.76612 -30.56359 -28.29762 -28.04139 -26.31800 -24.93178 -23.62709 -23.13373 -21.74590 -21.57598 -20.56125 -19.82991 -19.32629 -17.90480 -17.36618 -17.09863 -16.52223 -15.95038 -15.53375 -15.10625 -14.75008 -14.17593 -14.11789 -14.07691 -13.99085 -13.93382 -13.57607 -13.52302 -13.12454 -12.99286 -12.93089 -12.53110 -12.29224 -12.22170 -12.18389 -11.71590 -11.69065 -11.40463 -11.23735 -11.17565 -11.12903 -10.93256 -10.73873 -10.63470 -10.32723 -10.19205 -10.15145 -10.04766 -9.69300 -9.53894 -9.00807 -8.99776 -8.82707 -7.39453 -5.86296 -3.22976 1.36716 2.09539 2.39030 2.68509 3.27201 3.28146 3.33589 3.40785 3.97336 4.20809 4.36190 4.49761 4.54819 4.57747 4.62282 4.72460 4.88037 4.98336 5.07610 5.09724 5.21027 5.25708 5.27623 5.36747 5.40786 5.52918 5.62864 5.65722 5.67093 5.71786 5.84119 5.86677 5.90489 5.99603 6.01441 6.12576 6.13147 6.23884 6.33626 6.35580 6.44057 6.52291 6.56832 6.76290 6.95211 7.29077 7.69964 7.89200 8.31300 8.33038 8.34260 9.09440 9.81507 10.00558 11.31177 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.012862 B = 0.003307 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2176.416355 B = 8466.075541 C =10234.563081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.108 4.108 3 C -0.140 4.140 4 C 0.175 3.825 5 H 0.062 0.938 6 C 0.110 3.890 7 N -0.712 5.712 8 C 0.518 3.482 9 O -0.553 6.553 10 C -0.102 4.102 11 H 0.105 0.895 12 C -0.115 4.115 13 C -0.032 4.032 14 C -0.017 4.017 15 N -0.261 5.261 16 N -0.101 5.101 17 N -0.285 5.285 18 C 0.080 3.920 19 C -0.017 4.017 20 C -0.022 4.022 21 N -0.746 5.746 22 C -0.243 4.243 23 H 0.094 0.906 24 C 0.009 3.991 25 N -0.929 5.929 26 Si 0.879 3.121 27 H -0.286 1.286 28 H -0.292 1.292 29 H -0.276 1.276 30 H 0.051 0.949 31 H 0.047 0.953 32 H 0.050 0.950 33 H 0.061 0.939 34 H 0.089 0.911 35 H 0.031 0.969 36 H 0.043 0.957 37 H 0.063 0.937 38 H 0.070 0.930 39 H 0.411 0.589 40 H 0.074 0.926 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.092 0.908 45 H 0.101 0.899 46 H 0.099 0.901 47 H 0.085 0.915 48 H 0.096 0.904 49 H 0.362 0.638 50 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.306 -15.064 2.512 19.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.130 4.130 3 C -0.197 4.197 4 C 0.065 3.935 5 H 0.080 0.920 6 C -0.015 4.015 7 N -0.364 5.364 8 C 0.303 3.697 9 O -0.432 6.432 10 C -0.124 4.124 11 H 0.124 0.876 12 C -0.154 4.154 13 C -0.071 4.071 14 C -0.157 4.157 15 N -0.126 5.126 16 N -0.079 5.079 17 N -0.077 5.077 18 C -0.061 4.061 19 C -0.151 4.151 20 C -0.062 4.062 21 N -0.389 5.389 22 C -0.373 4.373 23 H 0.112 0.888 24 C -0.187 4.187 25 N -0.576 5.576 26 Si 0.709 3.291 27 H -0.213 1.213 28 H -0.218 1.218 29 H -0.202 1.202 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.107 0.893 35 H 0.050 0.950 36 H 0.062 0.938 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.248 0.752 40 H 0.093 0.907 41 H 0.109 0.891 42 H 0.108 0.892 43 H 0.107 0.893 44 H 0.110 0.890 45 H 0.120 0.880 46 H 0.118 0.882 47 H 0.104 0.896 48 H 0.114 0.886 49 H 0.195 0.805 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.230 -16.319 3.124 20.631 hybrid contribution 0.515 -0.169 -1.021 1.155 sum -11.716 -16.488 2.104 20.336 Atomic orbital electron populations 1.21939 0.96657 1.00917 1.01193 1.21696 0.93759 0.98073 0.99493 1.21826 1.04432 0.94205 0.99226 1.20528 0.85078 0.91195 0.96713 0.91962 1.21808 0.97759 0.93145 0.88746 1.46030 1.48490 1.10898 1.30956 1.20309 0.81278 0.82215 0.85893 1.90669 1.36807 1.68016 1.47672 1.21313 0.97124 0.95128 0.98805 0.87647 1.21704 0.92066 1.03538 0.98047 1.19962 0.99687 0.90092 0.97378 1.21740 0.95101 0.99461 0.99413 1.74799 1.20104 0.99612 1.18038 1.78573 0.95219 1.21298 1.12770 1.46806 1.18026 1.14561 1.28325 1.22275 0.83821 0.95572 1.04452 1.21833 0.99941 0.89646 1.03672 1.19893 0.97828 0.92021 0.96414 1.42830 1.00311 1.20669 1.75100 1.19027 0.89248 0.96132 1.32868 0.88789 1.24655 0.96203 0.97044 1.00838 1.69689 1.07141 1.29718 1.51090 0.86662 0.79987 0.83378 0.79056 1.21269 1.21796 1.20237 0.93007 0.93417 0.93114 0.92035 0.89263 0.94993 0.93767 0.91893 0.91139 0.75229 0.90687 0.89130 0.89150 0.89270 0.88972 0.87996 0.88219 0.89622 0.88559 0.80528 0.92979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 8.84 37.16 0.33 -1.56 16 2 C -0.11 -1.67 2.69 -90.62 -0.24 -1.92 16 3 C -0.14 -2.40 8.26 37.15 0.31 -2.10 16 4 C 0.17 2.83 2.18 -67.93 -0.15 2.69 16 5 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 6 C 0.11 1.58 4.73 -4.05 -0.02 1.56 16 7 N -0.71 -9.74 5.21 -60.30 -0.31 -10.05 16 8 C 0.52 6.86 7.15 -10.99 -0.08 6.78 16 9 O -0.55 -8.79 15.82 5.56 0.09 -8.70 16 10 C -0.10 -1.07 2.50 -91.49 -0.23 -1.30 16 11 H 0.11 0.97 8.12 -51.93 -0.42 0.55 16 12 C -0.12 -1.25 5.17 -26.45 -0.14 -1.39 16 13 C -0.03 -0.35 6.30 -27.73 -0.17 -0.53 16 14 C -0.02 -0.22 7.11 -83.14 -0.59 -0.81 16 15 N -0.26 -3.92 12.40 33.15 0.41 -3.51 16 16 N -0.10 -1.39 13.19 60.35 0.80 -0.59 16 17 N -0.29 -3.04 3.73 -64.00 -0.24 -3.28 16 18 C 0.08 0.43 11.27 59.85 0.67 1.10 16 19 C -0.02 -0.19 6.76 -82.50 -0.56 -0.75 16 20 C -0.02 -0.22 4.71 -27.74 -0.13 -0.35 16 21 N -0.75 -14.82 4.24 -53.43 -0.23 -15.05 16 22 C -0.24 -5.91 8.05 -15.06 -0.12 -6.03 16 23 H 0.09 2.49 7.63 -52.49 -0.40 2.09 16 24 C 0.01 0.24 5.50 -17.43 -0.10 0.14 16 25 N -0.93 -27.03 13.97 55.49 0.78 -26.26 16 26 Si 0.88 20.30 27.74 -169.99 -4.71 15.58 16 27 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 28 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 29 H -0.28 -5.83 6.52 56.52 0.37 -5.46 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.05 0.60 6.54 -51.93 -0.34 0.26 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.09 1.86 6.01 -51.93 -0.31 1.55 16 35 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.07 0.96 6.71 -51.93 -0.35 0.61 16 39 H 0.41 5.62 7.47 -40.82 -0.30 5.32 16 40 H 0.07 0.85 8.12 -51.93 -0.42 0.42 16 41 H 0.09 1.03 7.31 -51.93 -0.38 0.66 16 42 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 45 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 46 H 0.10 0.34 7.71 -51.92 -0.40 -0.06 16 47 H 0.09 0.73 7.87 -51.93 -0.41 0.32 16 48 H 0.10 1.00 7.78 -51.93 -0.40 0.60 16 49 H 0.36 7.31 5.66 -40.82 -0.23 7.08 16 50 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 392.98 15.07 5.92 5.92 Total: -1.00 -32.12 392.98 -6.91 -39.03 By element: Atomic # 1 Polarization: 19.54 SS G_CDS: -8.19 Total: 11.35 kcal Atomic # 6 Polarization: -3.23 SS G_CDS: -1.22 Total: -4.45 kcal Atomic # 7 Polarization: -59.94 SS G_CDS: 1.20 Total: -58.74 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: 0.09 Total: -8.70 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -4.71 Total: 15.58 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.12 -6.91 -39.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482549418.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.227 kcal (2) G-P(sol) polarization free energy of solvation -32.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds