Wall clock time and date at job start Tue Mar 31 2020 20:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47064 * 2 1 4 4 C 1.52998 * 109.47573 * 119.99932 * 2 1 3 5 5 H 1.09009 * 109.46923 * 300.00200 * 4 2 1 6 6 C 1.53002 * 109.46752 * 59.99576 * 4 2 1 7 7 N 1.46498 * 109.46790 * 175.00161 * 6 4 2 8 8 C 1.34781 * 119.99881 * 180.02562 * 7 6 4 9 9 O 1.21276 * 120.00266 * 0.02562 * 8 7 6 10 10 C 1.50700 * 119.99946 * 179.97438 * 8 7 6 11 11 H 1.09006 * 109.45948 * 300.03288 * 10 8 7 12 12 C 1.53107 * 109.45863 * 60.00058 * 10 8 7 13 13 C 1.53424 * 109.57818 * 190.09278 * 12 10 8 14 14 C 1.50593 * 108.33581 * 310.18021 * 13 12 10 15 15 N 1.32905 * 129.16664 * 196.46854 * 14 13 12 16 16 N 1.29021 * 108.63955 * 179.89723 * 15 14 13 17 17 N 1.29109 * 110.25690 * 0.02971 * 16 15 14 18 18 C 1.46500 * 126.00919 * 180.09140 * 17 16 15 19 19 C 1.34394 * 107.98627 * 0.06103 * 17 16 15 20 20 C 1.50532 * 129.25835 * 179.72779 * 19 17 16 21 21 N 1.46490 * 109.47539 * 179.97438 * 4 2 1 22 22 C 1.36935 * 120.00121 * 84.99635 * 21 4 2 23 23 H 1.07997 * 120.00139 * 0.02562 * 22 21 4 24 24 C 1.38816 * 120.00401 * 180.02562 * 22 21 4 25 25 N 1.31624 * 119.99569 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00172 * 180.02562 * 24 22 21 27 27 H 1.48508 * 109.46685 * 269.99637 * 26 24 22 28 28 H 1.48494 * 109.47357 * 29.99716 * 26 24 22 29 29 H 1.48502 * 109.47120 * 150.00435 * 26 24 22 30 30 H 1.09002 * 109.46796 * 299.99852 * 1 2 3 31 31 H 1.08999 * 109.47225 * 59.99467 * 1 2 3 32 32 H 1.08992 * 109.47299 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.46796 * 240.00148 * 2 1 3 34 34 H 1.08998 * 109.47319 * 180.02562 * 3 2 1 35 35 H 1.09000 * 109.47012 * 300.00335 * 3 2 1 36 36 H 1.08997 * 109.47519 * 60.00076 * 3 2 1 37 37 H 1.08995 * 109.47277 * 295.00265 * 6 4 2 38 38 H 1.08998 * 109.47005 * 55.00959 * 6 4 2 39 39 H 0.97000 * 120.00512 * 359.97438 * 7 6 4 40 40 H 1.09005 * 109.45717 * 310.12706 * 12 10 8 41 41 H 1.09001 * 109.45374 * 70.08505 * 12 10 8 42 42 H 1.09006 * 109.69153 * 69.89333 * 13 12 10 43 43 H 1.09001 * 109.68969 * 190.43195 * 13 12 10 44 44 H 1.09007 * 109.46884 * 89.98023 * 18 17 16 45 45 H 1.08995 * 109.47364 * 209.97670 * 18 17 16 46 46 H 1.08996 * 109.47078 * 329.98406 * 18 17 16 47 47 H 1.09003 * 109.69610 * 76.86020 * 20 19 17 48 48 H 1.09008 * 109.69517 * 316.28022 * 20 19 17 49 49 H 0.97000 * 120.00577 * 265.00234 * 21 4 2 50 50 H 0.97001 * 119.99885 * 359.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 1.6767 -0.2073 2.1392 6 6 1.5300 -2.1637 1.2492 7 7 2.1142 -2.8881 2.3806 8 6 1.8061 -4.1847 2.5821 9 8 1.0456 -4.7518 1.8266 10 6 2.4075 -4.9301 3.7456 11 1 3.4938 -4.9279 3.6559 12 6 2.0025 -4.2458 5.0540 13 6 2.8081 -4.8408 6.2162 14 6 2.7114 -6.3417 6.1402 15 7 2.9868 -7.2488 7.0717 16 7 2.7626 -8.4220 6.5838 17 7 2.3496 -8.3275 5.3642 18 6 1.9927 -9.4450 4.4867 19 6 2.3041 -7.0237 5.0413 20 6 1.8979 -6.3773 3.7440 21 7 3.5050 -0.7217 1.2489 22 6 4.1902 0.3529 1.7497 23 1 3.6507 1.2007 2.1452 24 6 5.5784 0.3527 1.7489 25 7 6.2360 -0.6803 1.2663 26 14 6.5130 1.8184 2.4327 27 1 6.7601 2.7990 1.3451 28 1 5.7112 2.4602 3.5052 29 1 7.8109 1.3611 2.9911 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4426 -0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6767 1.9564 0.8899 37 1 0.4438 -2.1650 1.3388 38 1 1.8184 -2.6510 0.3179 39 1 2.7234 -2.4350 2.9843 40 1 2.2040 -3.1769 4.9823 41 1 0.9387 -4.4034 5.2319 42 1 3.8513 -4.5353 6.1344 43 1 2.3969 -4.4932 7.1640 44 1 0.9331 -9.6734 4.6020 45 1 2.1950 -9.1727 3.4509 46 1 2.5843 -10.3205 4.7544 47 1 0.8115 -6.3840 3.6545 48 1 2.3390 -6.9211 2.9086 49 1 3.9897 -1.4832 0.8939 50 1 5.7506 -1.4416 0.9116 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482549419.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:43 Heat of formation + Delta-G solvation = 51.475899 kcal Electronic energy + Delta-G solvation = -29701.589325 eV Core-core repulsion = 25765.493599 eV Total energy + Delta-G solvation = -3936.095726 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.55428 -39.96256 -37.62366 -36.60012 -35.08173 -34.04649 -33.48825 -30.86137 -30.74882 -30.11586 -28.13858 -27.91280 -26.16897 -24.80014 -23.63959 -23.24778 -21.96589 -21.57122 -20.54337 -19.75925 -19.22607 -17.68572 -17.38628 -17.10105 -16.52516 -16.00770 -15.35416 -14.97911 -14.72550 -14.38878 -14.10680 -14.06019 -13.93800 -13.73745 -13.69005 -13.53924 -13.41706 -13.05647 -12.96478 -12.38895 -12.21950 -12.17054 -12.00797 -11.71060 -11.69120 -11.31897 -11.27721 -11.14170 -10.98764 -10.81576 -10.69311 -10.46046 -10.19047 -10.13096 -10.12560 -9.96716 -9.64435 -9.26304 -8.99363 -8.95986 -8.77105 -7.15018 -6.17381 -3.19595 1.39271 2.12327 2.40836 2.74387 3.32058 3.47052 3.49928 3.64117 3.99116 4.23958 4.39103 4.57955 4.58359 4.59724 4.64818 4.73502 4.91602 5.01170 5.12739 5.21468 5.25382 5.27153 5.29179 5.42088 5.45707 5.53503 5.66924 5.67427 5.68505 5.76489 5.83949 5.86961 5.87799 5.98867 6.05943 6.11951 6.12311 6.26116 6.32623 6.38034 6.42788 6.51512 6.56265 6.78751 6.95338 7.21598 7.74035 7.75806 8.36224 8.38151 8.66289 9.10503 9.97415 10.11995 11.29478 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.012308 B = 0.002993 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2274.435052 B = 9354.391783 C =10879.516880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.109 4.109 3 C -0.139 4.139 4 C 0.176 3.824 5 H 0.055 0.945 6 C 0.112 3.888 7 N -0.710 5.710 8 C 0.518 3.482 9 O -0.554 6.554 10 C -0.103 4.103 11 H 0.107 0.893 12 C -0.110 4.110 13 C -0.032 4.032 14 C -0.018 4.018 15 N -0.262 5.262 16 N -0.101 5.101 17 N -0.285 5.285 18 C 0.080 3.920 19 C -0.016 4.016 20 C -0.022 4.022 21 N -0.732 5.732 22 C -0.328 4.328 23 H 0.068 0.932 24 C -0.041 4.041 25 N -0.941 5.941 26 Si 1.077 2.923 27 H -0.296 1.296 28 H -0.294 1.294 29 H -0.289 1.289 30 H 0.050 0.950 31 H 0.046 0.954 32 H 0.050 0.950 33 H 0.060 0.940 34 H 0.086 0.914 35 H 0.031 0.969 36 H 0.041 0.959 37 H 0.068 0.932 38 H 0.061 0.939 39 H 0.411 0.589 40 H 0.086 0.914 41 H 0.074 0.926 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.092 0.908 45 H 0.100 0.900 46 H 0.102 0.898 47 H 0.096 0.904 48 H 0.086 0.914 49 H 0.367 0.633 50 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.445 -10.629 4.076 16.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.131 4.131 3 C -0.196 4.196 4 C 0.065 3.935 5 H 0.073 0.927 6 C -0.013 4.013 7 N -0.361 5.361 8 C 0.304 3.696 9 O -0.433 6.433 10 C -0.125 4.125 11 H 0.125 0.875 12 C -0.149 4.149 13 C -0.071 4.071 14 C -0.158 4.158 15 N -0.126 5.126 16 N -0.079 5.079 17 N -0.077 5.077 18 C -0.061 4.061 19 C -0.150 4.150 20 C -0.062 4.062 21 N -0.375 5.375 22 C -0.459 4.459 23 H 0.086 0.914 24 C -0.239 4.239 25 N -0.586 5.586 26 Si 0.908 3.092 27 H -0.224 1.224 28 H -0.221 1.221 29 H -0.215 1.215 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.105 0.895 35 H 0.050 0.950 36 H 0.060 0.940 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.247 0.753 40 H 0.105 0.895 41 H 0.092 0.908 42 H 0.108 0.892 43 H 0.107 0.893 44 H 0.110 0.890 45 H 0.118 0.882 46 H 0.120 0.880 47 H 0.114 0.886 48 H 0.104 0.896 49 H 0.201 0.799 50 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -10.199 -11.231 5.106 16.007 hybrid contribution -1.387 -0.113 -1.244 1.866 sum -11.585 -11.344 3.862 16.668 Atomic orbital electron populations 1.21938 0.96766 1.00935 1.01039 1.21721 0.93617 0.97911 0.99837 1.21812 1.04244 0.94503 0.99015 1.20479 0.85801 0.91043 0.96145 0.92710 1.21773 0.97473 0.93265 0.88766 1.46004 1.48395 1.10841 1.30858 1.20291 0.81301 0.82235 0.85801 1.90664 1.36858 1.67968 1.47843 1.21319 1.02710 0.94051 0.94429 0.87487 1.21652 1.00819 1.00499 0.91914 1.19968 1.01934 0.85720 0.99485 1.21721 1.05764 0.97902 0.90459 1.74787 1.17291 0.94760 1.25755 1.78570 1.18047 1.18559 0.92691 1.46806 1.42836 1.06816 1.11214 1.22281 1.03193 0.87379 0.93295 1.21845 1.08560 0.84098 1.00461 1.19897 1.02495 0.93353 0.90430 1.42470 0.99409 1.20904 1.74720 1.20006 0.91532 0.97329 1.37001 0.91423 1.25676 0.93425 1.03660 1.01173 1.70868 1.37398 1.07187 1.43165 0.83268 0.75879 0.74329 0.75727 1.22402 1.22110 1.21474 0.93129 0.93487 0.93084 0.92125 0.89480 0.95011 0.94006 0.91422 0.92024 0.75254 0.89525 0.90768 0.89237 0.89250 0.88973 0.88179 0.87974 0.88591 0.89583 0.79924 0.93333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 8.84 37.16 0.33 -1.66 16 2 C -0.11 -1.77 2.69 -90.62 -0.24 -2.02 16 3 C -0.14 -2.42 8.26 37.16 0.31 -2.11 16 4 C 0.18 3.02 2.18 -67.94 -0.15 2.88 16 5 H 0.05 0.98 8.08 -51.92 -0.42 0.56 16 6 C 0.11 1.73 4.73 -4.04 -0.02 1.71 16 7 N -0.71 -10.33 5.21 -60.30 -0.31 -10.64 16 8 C 0.52 7.27 7.15 -10.98 -0.08 7.20 16 9 O -0.55 -9.27 15.82 5.56 0.09 -9.18 16 10 C -0.10 -1.15 2.50 -91.49 -0.23 -1.38 16 11 H 0.11 1.20 8.12 -51.93 -0.42 0.78 16 12 C -0.11 -1.09 5.17 -26.46 -0.14 -1.23 16 13 C -0.03 -0.33 6.30 -27.72 -0.17 -0.51 16 14 C -0.02 -0.24 7.11 -83.12 -0.59 -0.83 16 15 N -0.26 -3.94 12.40 33.16 0.41 -3.53 16 16 N -0.10 -1.41 13.19 60.35 0.80 -0.62 16 17 N -0.28 -3.15 3.73 -64.01 -0.24 -3.38 16 18 C 0.08 0.47 11.27 59.85 0.67 1.14 16 19 C -0.02 -0.18 6.76 -82.50 -0.56 -0.74 16 20 C -0.02 -0.23 4.70 -27.74 -0.13 -0.36 16 21 N -0.73 -15.59 4.44 -53.43 -0.24 -15.83 16 22 C -0.33 -7.99 7.57 -15.06 -0.11 -8.10 16 23 H 0.07 1.65 7.40 -52.49 -0.39 1.26 16 24 C -0.04 -1.08 5.50 -17.43 -0.10 -1.18 16 25 N -0.94 -26.86 13.70 55.49 0.76 -26.10 16 26 Si 1.08 24.26 29.92 -169.99 -5.09 19.18 16 27 H -0.30 -6.61 7.11 56.52 0.40 -6.21 16 28 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 29 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.64 6.54 -51.93 -0.34 0.30 16 33 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.09 1.82 6.01 -51.93 -0.31 1.51 16 35 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.99 6.71 -51.93 -0.35 0.64 16 38 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 39 H 0.41 6.07 7.47 -40.82 -0.30 5.77 16 40 H 0.09 0.82 7.31 -51.93 -0.38 0.44 16 41 H 0.07 0.72 8.12 -51.93 -0.42 0.30 16 42 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.09 0.39 8.14 -51.92 -0.42 -0.03 16 45 H 0.10 0.42 7.71 -51.93 -0.40 0.02 16 46 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.10 1.01 7.78 -51.93 -0.40 0.60 16 48 H 0.09 0.83 7.87 -51.92 -0.41 0.42 16 49 H 0.37 8.39 6.63 -40.82 -0.27 8.12 16 50 H 0.26 7.18 6.77 -40.82 -0.28 6.91 16 LS Contribution 394.40 15.07 5.94 5.94 Total: -1.00 -32.00 394.40 -7.20 -39.20 By element: Atomic # 1 Polarization: 20.28 SS G_CDS: -8.12 Total: 12.16 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: -1.21 Total: -7.19 kcal Atomic # 7 Polarization: -61.28 SS G_CDS: 1.18 Total: -60.10 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: 0.09 Total: -9.18 kcal Atomic # 14 Polarization: 24.26 SS G_CDS: -5.09 Total: 19.18 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.00 -7.20 -39.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482549419.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.676 kcal (2) G-P(sol) polarization free energy of solvation -31.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds