Wall clock time and date at job start Tue Mar 31 2020 20:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52993 * 109.47407 * 2 1 4 4 C 1.52996 * 109.47112 * 120.00412 * 2 1 3 5 5 H 1.08998 * 109.47262 * 299.99862 * 4 2 1 6 6 C 1.53002 * 109.47202 * 179.97438 * 4 2 1 7 7 N 1.46510 * 109.47146 * 185.00014 * 6 4 2 8 8 C 1.34771 * 119.99815 * 180.02562 * 7 6 4 9 9 O 1.21289 * 120.00067 * 0.02562 * 8 7 6 10 10 C 1.50702 * 120.00079 * 179.97438 * 8 7 6 11 11 H 1.09002 * 109.45725 * 59.96288 * 10 8 7 12 12 C 1.53112 * 109.45467 * 300.00016 * 10 8 7 13 13 C 1.53427 * 109.55881 * 169.91354 * 12 10 8 14 14 C 1.50551 * 108.35707 * 49.82119 * 13 12 10 15 15 N 1.32911 * 129.17113 * 163.35409 * 14 13 12 16 16 N 1.29015 * 108.63666 * 180.23885 * 15 14 13 17 17 N 1.29110 * 110.25912 * 359.97438 * 16 15 14 18 18 C 1.46499 * 126.00228 * 179.97438 * 17 16 15 19 19 C 1.34386 * 107.98460 * 359.93129 * 17 16 15 20 20 C 1.50541 * 129.25214 * 180.12813 * 19 17 16 21 21 N 1.46499 * 109.47391 * 59.99808 * 4 2 1 22 22 C 1.36940 * 120.00185 * 275.00152 * 21 4 2 23 23 H 1.07998 * 119.99780 * 0.02562 * 22 21 4 24 24 C 1.38811 * 120.00214 * 179.97438 * 22 21 4 25 25 N 1.31620 * 119.99815 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 120.00079 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47486 * 89.99842 * 26 24 22 28 28 H 1.48499 * 109.47105 * 210.00106 * 26 24 22 29 29 H 1.48500 * 109.46764 * 329.99664 * 26 24 22 30 30 H 1.09003 * 109.47338 * 299.99763 * 1 2 3 31 31 H 1.09002 * 109.47356 * 59.99693 * 1 2 3 32 32 H 1.08999 * 109.47300 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47338 * 240.00237 * 2 1 3 34 34 H 1.08995 * 109.47694 * 179.97438 * 3 2 1 35 35 H 1.09004 * 109.47635 * 300.00427 * 3 2 1 36 36 H 1.09007 * 109.47149 * 59.99956 * 3 2 1 37 37 H 1.09001 * 109.46880 * 65.00179 * 6 4 2 38 38 H 1.09001 * 109.47235 * 304.99845 * 6 4 2 39 39 H 0.97001 * 119.99709 * 359.97438 * 7 6 4 40 40 H 1.09002 * 109.45470 * 289.93839 * 12 10 8 41 41 H 1.09000 * 109.45531 * 49.89788 * 12 10 8 42 42 H 1.08996 * 109.68841 * 169.51311 * 13 12 10 43 43 H 1.08991 * 109.69309 * 290.09488 * 13 12 10 44 44 H 1.09001 * 109.47165 * 270.00289 * 18 17 16 45 45 H 1.08999 * 109.47646 * 30.00617 * 18 17 16 46 46 H 1.09008 * 109.46730 * 150.00443 * 18 17 16 47 47 H 1.08993 * 109.69338 * 43.89039 * 20 19 17 48 48 H 1.08995 * 109.72859 * 283.32174 * 20 19 17 49 49 H 0.96999 * 120.00091 * 94.99855 * 21 4 2 50 50 H 0.96998 * 120.00084 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2492 5 1 1.6766 -0.2076 2.1392 6 6 3.5699 -0.7219 1.2489 7 7 4.0582 -1.5143 2.3803 8 6 5.3832 -1.6555 2.5821 9 8 6.1714 -1.1263 1.8272 10 6 5.8856 -2.4701 3.7462 11 1 5.5215 -3.4937 3.6571 12 6 5.3751 -1.8592 5.0541 13 6 5.6679 -2.8165 6.2168 14 6 7.1149 -3.2253 6.1414 15 7 7.8791 -3.7839 7.0744 16 7 9.0604 -3.9622 6.5873 17 7 9.1086 -3.5438 5.3668 18 6 10.2813 -3.5807 4.4895 19 6 7.8938 -3.0695 5.0425 20 6 7.4198 -2.4721 3.7446 21 7 1.5516 -2.1025 1.2491 22 6 0.3100 -2.3898 1.7503 23 1 -0.3093 -1.5981 2.1452 24 6 -0.1529 -3.6985 1.7498 25 7 0.6013 -4.6631 1.2672 26 14 -1.8468 -4.0902 2.4328 27 1 -2.8532 -3.9964 1.3449 28 1 -1.8491 -5.4660 2.9919 29 1 -2.1848 -3.1198 3.5049 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1299 1.4425 0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.6766 1.9563 0.8900 37 1 3.9336 0.3018 1.3383 38 1 3.9329 -1.1564 0.3174 39 1 3.4278 -1.9366 2.9846 40 1 5.8778 -0.9084 5.2312 41 1 4.3001 -1.6937 4.9822 42 1 5.4781 -2.3122 7.1643 43 1 5.0324 -3.6982 6.1356 44 1 10.8489 -2.6570 4.6027 45 1 10.9103 -4.4290 4.7591 46 1 9.9571 -3.6834 3.4539 47 1 7.7857 -3.0699 2.9098 48 1 7.7880 -1.4503 3.6537 49 1 2.1077 -2.8136 0.8941 50 1 0.2780 -5.5776 1.2671 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482549420.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:50 Heat of formation + Delta-G solvation = 50.823583 kcal Electronic energy + Delta-G solvation = -29650.231297 eV Core-core repulsion = 25714.107284 eV Total energy + Delta-G solvation = -3936.124012 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.52565 -39.88135 -37.51553 -36.53619 -35.05139 -33.95076 -33.16409 -30.83740 -30.71064 -30.23302 -28.14585 -27.93598 -26.17918 -24.84573 -23.68920 -23.23228 -21.81322 -21.53402 -20.46737 -19.68684 -19.16960 -17.63778 -17.20313 -17.01556 -16.43476 -15.86818 -15.33794 -15.01907 -14.71846 -14.10990 -14.06366 -14.01994 -13.87722 -13.82284 -13.50957 -13.44990 -13.23684 -13.01803 -12.81966 -12.34701 -12.13945 -12.11854 -12.06796 -11.66920 -11.65585 -11.28097 -11.15279 -11.05773 -10.97969 -10.87350 -10.70916 -10.61949 -10.32501 -10.14420 -10.10078 -10.00194 -9.61094 -9.54697 -8.97233 -8.94240 -8.67674 -7.07892 -5.86551 -3.15892 1.42332 2.15313 2.43691 2.82612 3.36407 3.40453 3.43218 3.44801 4.03155 4.27617 4.43593 4.50160 4.62121 4.63905 4.68933 4.77731 4.94175 5.06388 5.19154 5.29156 5.30981 5.31853 5.36213 5.46951 5.49987 5.59136 5.71347 5.72109 5.72658 5.85661 5.89002 5.91132 5.96143 6.03591 6.14234 6.15859 6.20033 6.33614 6.40682 6.41260 6.49549 6.58614 6.63367 6.87006 7.02816 7.25575 7.62644 7.85343 8.30673 8.39016 8.47133 9.43014 9.97170 10.32991 11.35111 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.012248 B = 0.002989 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2285.628852 B = 9366.250418 C =10900.985065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.109 4.109 3 C -0.149 4.149 4 C 0.170 3.830 5 H 0.054 0.946 6 C 0.113 3.887 7 N -0.708 5.708 8 C 0.519 3.481 9 O -0.556 6.556 10 C -0.103 4.103 11 H 0.108 0.892 12 C -0.110 4.110 13 C -0.032 4.032 14 C -0.019 4.019 15 N -0.262 5.262 16 N -0.102 5.102 17 N -0.285 5.285 18 C 0.080 3.920 19 C -0.015 4.015 20 C -0.022 4.022 21 N -0.721 5.721 22 C -0.238 4.238 23 H 0.073 0.927 24 C -0.009 4.009 25 N -0.929 5.929 26 Si 0.902 3.098 27 H -0.291 1.291 28 H -0.292 1.292 29 H -0.282 1.282 30 H 0.040 0.960 31 H 0.031 0.969 32 H 0.086 0.914 33 H 0.062 0.938 34 H 0.050 0.950 35 H 0.045 0.955 36 H 0.049 0.951 37 H 0.066 0.934 38 H 0.062 0.938 39 H 0.411 0.589 40 H 0.073 0.927 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.092 0.908 45 H 0.101 0.899 46 H 0.100 0.900 47 H 0.086 0.914 48 H 0.096 0.904 49 H 0.385 0.615 50 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.001 6.822 3.865 16.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.131 4.131 3 C -0.207 4.207 4 C 0.059 3.941 5 H 0.072 0.928 6 C -0.011 4.011 7 N -0.359 5.359 8 C 0.304 3.696 9 O -0.435 6.435 10 C -0.125 4.125 11 H 0.126 0.874 12 C -0.149 4.149 13 C -0.071 4.071 14 C -0.159 4.159 15 N -0.126 5.126 16 N -0.080 5.080 17 N -0.077 5.077 18 C -0.061 4.061 19 C -0.149 4.149 20 C -0.062 4.062 21 N -0.363 5.363 22 C -0.369 4.369 23 H 0.091 0.909 24 C -0.206 4.206 25 N -0.577 5.577 26 Si 0.733 3.267 27 H -0.218 1.218 28 H -0.219 1.219 29 H -0.207 1.207 30 H 0.060 0.940 31 H 0.050 0.950 32 H 0.105 0.895 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.248 0.752 40 H 0.092 0.908 41 H 0.105 0.895 42 H 0.107 0.893 43 H 0.108 0.892 44 H 0.110 0.890 45 H 0.120 0.880 46 H 0.118 0.882 47 H 0.104 0.896 48 H 0.114 0.886 49 H 0.219 0.781 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 15.230 6.504 4.586 17.184 hybrid contribution -1.461 -0.368 -0.596 1.620 sum 13.770 6.136 3.991 15.594 Atomic orbital electron populations 1.21820 0.94938 1.03906 0.99011 1.21729 0.96928 0.94400 1.00073 1.21942 1.00450 0.97355 1.00945 1.20545 0.89308 0.88201 0.96008 0.92830 1.21754 0.95709 0.94824 0.88852 1.45985 1.06607 1.52487 1.30792 1.20260 0.82736 0.80839 0.85773 1.90663 1.55583 1.49335 1.47954 1.21316 0.95045 1.01710 0.94439 0.87434 1.21652 1.02506 0.98794 0.91922 1.19962 0.87808 0.99853 0.99494 1.21718 0.98758 1.04970 0.90426 1.74784 0.96942 1.15134 1.25788 1.78563 1.16345 1.20352 0.92695 1.46802 1.10163 1.39589 1.11144 1.22280 0.85144 1.05397 0.93321 1.21861 0.86230 1.06305 1.00488 1.19900 0.94282 1.01655 0.90362 1.42461 1.18104 1.01836 1.73859 1.19184 0.92802 0.92343 1.32527 0.90921 1.24716 0.98232 0.95892 1.01726 1.69653 1.36830 0.99907 1.51269 0.86282 0.84436 0.77425 0.78588 1.21795 1.21852 1.20729 0.94042 0.95015 0.89499 0.91937 0.93067 0.93583 0.93185 0.91565 0.91917 0.75173 0.90809 0.89466 0.89317 0.89244 0.88989 0.88009 0.88158 0.89580 0.88601 0.78122 0.93480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 8.26 37.15 0.31 -2.09 16 2 C -0.11 -1.76 2.69 -90.63 -0.24 -2.00 16 3 C -0.15 -1.97 8.84 37.15 0.33 -1.64 16 4 C 0.17 2.89 2.18 -67.93 -0.15 2.75 16 5 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 6 C 0.11 1.75 4.73 -4.04 -0.02 1.73 16 7 N -0.71 -10.35 5.21 -60.28 -0.31 -10.66 16 8 C 0.52 7.33 7.15 -10.99 -0.08 7.25 16 9 O -0.56 -9.36 15.82 5.55 0.09 -9.27 16 10 C -0.10 -1.16 2.50 -91.49 -0.23 -1.39 16 11 H 0.11 1.22 8.12 -51.93 -0.42 0.80 16 12 C -0.11 -1.09 5.17 -26.45 -0.14 -1.23 16 13 C -0.03 -0.33 6.30 -27.73 -0.17 -0.51 16 14 C -0.02 -0.24 7.11 -83.14 -0.59 -0.83 16 15 N -0.26 -3.96 12.40 33.15 0.41 -3.55 16 16 N -0.10 -1.43 13.19 60.35 0.80 -0.63 16 17 N -0.29 -3.16 3.73 -64.00 -0.24 -3.40 16 18 C 0.08 0.47 11.27 59.85 0.67 1.15 16 19 C -0.01 -0.17 6.76 -82.50 -0.56 -0.73 16 20 C -0.02 -0.23 4.71 -27.74 -0.13 -0.36 16 21 N -0.72 -15.37 4.44 -53.43 -0.24 -15.60 16 22 C -0.24 -5.72 7.57 -15.06 -0.11 -5.83 16 23 H 0.07 1.72 7.39 -52.49 -0.39 1.34 16 24 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 25 N -0.93 -25.74 13.06 55.49 0.72 -25.02 16 26 Si 0.90 20.86 29.55 -169.99 -5.02 15.83 16 27 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 28 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 29 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 30 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.09 1.78 6.01 -51.93 -0.31 1.47 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.05 0.64 6.54 -51.93 -0.34 0.30 16 35 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.05 0.63 8.14 -51.92 -0.42 0.21 16 37 H 0.07 0.96 6.71 -51.93 -0.35 0.62 16 38 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.41 6.09 7.47 -40.82 -0.30 5.78 16 40 H 0.07 0.72 8.12 -51.93 -0.42 0.29 16 41 H 0.09 0.82 7.31 -51.93 -0.38 0.44 16 42 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 46 H 0.10 0.43 7.71 -51.92 -0.40 0.03 16 47 H 0.09 0.84 7.87 -51.93 -0.41 0.43 16 48 H 0.10 1.01 7.78 -51.93 -0.40 0.61 16 49 H 0.38 9.06 7.80 -40.82 -0.32 8.74 16 50 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 396.09 15.07 5.97 5.97 Total: -1.00 -31.16 396.09 -7.26 -38.42 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: -8.23 Total: 12.00 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: -1.21 Total: -4.08 kcal Atomic # 7 Polarization: -60.01 SS G_CDS: 1.14 Total: -58.87 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: 0.09 Total: -9.27 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -31.16 -7.26 -38.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482549420.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.247 kcal (2) G-P(sol) polarization free energy of solvation -31.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds