Wall clock time and date at job start Tue Mar 31 2020 20:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52993 * 109.47407 * 2 1 4 4 C 1.52996 * 109.47112 * 120.00412 * 2 1 3 5 5 H 1.08998 * 109.47262 * 299.99862 * 4 2 1 6 6 C 1.53002 * 109.47202 * 179.97438 * 4 2 1 7 7 N 1.46510 * 109.47146 * 185.00014 * 6 4 2 8 8 C 1.34771 * 119.99815 * 180.02562 * 7 6 4 9 9 O 1.21289 * 120.00067 * 0.02562 * 8 7 6 10 10 C 1.50702 * 120.00079 * 179.97438 * 8 7 6 11 11 H 1.09002 * 109.45725 * 59.96288 * 10 8 7 12 12 C 1.53112 * 109.45467 * 300.00016 * 10 8 7 13 13 C 1.53427 * 109.55881 * 169.91354 * 12 10 8 14 14 C 1.50551 * 108.35707 * 49.82119 * 13 12 10 15 15 N 1.32911 * 129.17113 * 163.35409 * 14 13 12 16 16 N 1.29015 * 108.63666 * 180.23885 * 15 14 13 17 17 N 1.29110 * 110.25912 * 359.97438 * 16 15 14 18 18 C 1.46499 * 126.00228 * 179.97438 * 17 16 15 19 19 C 1.34386 * 107.98460 * 359.93129 * 17 16 15 20 20 C 1.50541 * 129.25214 * 180.12813 * 19 17 16 21 21 N 1.46499 * 109.47391 * 59.99808 * 4 2 1 22 22 C 1.36940 * 120.00185 * 275.00152 * 21 4 2 23 23 H 1.07998 * 119.99780 * 0.02562 * 22 21 4 24 24 C 1.38811 * 120.00214 * 179.97438 * 22 21 4 25 25 N 1.31620 * 119.99815 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 120.00079 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47486 * 89.99842 * 26 24 22 28 28 H 1.48499 * 109.47105 * 210.00106 * 26 24 22 29 29 H 1.48500 * 109.46764 * 329.99664 * 26 24 22 30 30 H 1.09003 * 109.47338 * 299.99763 * 1 2 3 31 31 H 1.09002 * 109.47356 * 59.99693 * 1 2 3 32 32 H 1.08999 * 109.47300 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47338 * 240.00237 * 2 1 3 34 34 H 1.08995 * 109.47694 * 179.97438 * 3 2 1 35 35 H 1.09004 * 109.47635 * 300.00427 * 3 2 1 36 36 H 1.09007 * 109.47149 * 59.99956 * 3 2 1 37 37 H 1.09001 * 109.46880 * 65.00179 * 6 4 2 38 38 H 1.09001 * 109.47235 * 304.99845 * 6 4 2 39 39 H 0.97001 * 119.99709 * 359.97438 * 7 6 4 40 40 H 1.09002 * 109.45470 * 289.93839 * 12 10 8 41 41 H 1.09000 * 109.45531 * 49.89788 * 12 10 8 42 42 H 1.08996 * 109.68841 * 169.51311 * 13 12 10 43 43 H 1.08991 * 109.69309 * 290.09488 * 13 12 10 44 44 H 1.09001 * 109.47165 * 270.00289 * 18 17 16 45 45 H 1.08999 * 109.47646 * 30.00617 * 18 17 16 46 46 H 1.09008 * 109.46730 * 150.00443 * 18 17 16 47 47 H 1.08993 * 109.69338 * 43.89039 * 20 19 17 48 48 H 1.08995 * 109.72859 * 283.32174 * 20 19 17 49 49 H 0.96999 * 120.00091 * 94.99855 * 21 4 2 50 50 H 0.96998 * 120.00084 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2492 5 1 1.6766 -0.2076 2.1392 6 6 3.5699 -0.7219 1.2489 7 7 4.0582 -1.5143 2.3803 8 6 5.3832 -1.6555 2.5821 9 8 6.1714 -1.1263 1.8272 10 6 5.8856 -2.4701 3.7462 11 1 5.5215 -3.4937 3.6571 12 6 5.3751 -1.8592 5.0541 13 6 5.6679 -2.8165 6.2168 14 6 7.1149 -3.2253 6.1414 15 7 7.8791 -3.7839 7.0744 16 7 9.0604 -3.9622 6.5873 17 7 9.1086 -3.5438 5.3668 18 6 10.2813 -3.5807 4.4895 19 6 7.8938 -3.0695 5.0425 20 6 7.4198 -2.4721 3.7446 21 7 1.5516 -2.1025 1.2491 22 6 0.3100 -2.3898 1.7503 23 1 -0.3093 -1.5981 2.1452 24 6 -0.1529 -3.6985 1.7498 25 7 0.6013 -4.6631 1.2672 26 14 -1.8468 -4.0902 2.4328 27 1 -2.8532 -3.9964 1.3449 28 1 -1.8491 -5.4660 2.9919 29 1 -2.1848 -3.1198 3.5049 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1299 1.4425 0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.6766 1.9563 0.8900 37 1 3.9336 0.3018 1.3383 38 1 3.9329 -1.1564 0.3174 39 1 3.4278 -1.9366 2.9846 40 1 5.8778 -0.9084 5.2312 41 1 4.3001 -1.6937 4.9822 42 1 5.4781 -2.3122 7.1643 43 1 5.0324 -3.6982 6.1356 44 1 10.8489 -2.6570 4.6027 45 1 10.9103 -4.4290 4.7591 46 1 9.9571 -3.6834 3.4539 47 1 7.7857 -3.0699 2.9098 48 1 7.7880 -1.4503 3.6537 49 1 2.1077 -2.8136 0.8941 50 1 0.2780 -5.5776 1.2671 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482549420.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:47 Heat of formation + Delta-G solvation = 30.224324 kcal Electronic energy + Delta-G solvation = -29651.124547 eV Core-core repulsion = 25714.107284 eV Total energy + Delta-G solvation = -3937.017263 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 3.32 seconds Orbital eigenvalues (eV) -44.43968 -41.02040 -38.86054 -37.54986 -35.89029 -35.22428 -34.86731 -32.21641 -31.57164 -31.48771 -29.43551 -28.71137 -27.44054 -26.08735 -25.07334 -24.28024 -23.14164 -22.39092 -21.56394 -20.83777 -20.35633 -19.14043 -18.36280 -17.93588 -17.41993 -17.12325 -16.78209 -16.26651 -15.72598 -15.62160 -15.21328 -15.01375 -14.96974 -14.79784 -14.71977 -14.60754 -14.12502 -14.08382 -13.71455 -13.60758 -13.39175 -13.12064 -13.03647 -12.86938 -12.81045 -12.67909 -12.60746 -12.41270 -12.22255 -12.15140 -11.95522 -11.94883 -11.72789 -11.55334 -11.39124 -11.23731 -10.95629 -10.85488 -10.66663 -9.92675 -9.86154 -8.90460 -7.83623 -5.09570 0.52734 1.43347 1.46043 1.52393 1.55098 1.60810 1.69652 2.30261 2.63477 3.16919 3.44307 3.50864 3.71686 3.76499 3.79030 3.92241 3.97521 3.99766 4.15815 4.25256 4.29248 4.35352 4.38487 4.44733 4.49953 4.53194 4.57369 4.66254 4.70566 4.84258 4.89358 4.91960 4.96985 5.02742 5.04088 5.08549 5.13040 5.19689 5.20638 5.30698 5.31790 5.38439 5.59496 5.62053 5.66624 5.70195 5.81132 6.36970 6.67253 7.30741 7.43664 7.45665 8.17653 8.42143 9.39061 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.012248 B = 0.002989 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2285.628852 B = 9366.250418 C =10900.985065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.107 4.107 3 C -0.140 4.140 4 C 0.172 3.828 5 H 0.058 0.942 6 C 0.122 3.878 7 N -0.709 5.709 8 C 0.522 3.478 9 O -0.581 6.581 10 C -0.097 4.097 11 H 0.108 0.892 12 C -0.102 4.102 13 C -0.029 4.029 14 C -0.033 4.033 15 N -0.299 5.299 16 N -0.127 5.127 17 N -0.277 5.277 18 C 0.066 3.934 19 C -0.013 4.013 20 C -0.014 4.014 21 N -0.726 5.726 22 C -0.210 4.210 23 H 0.079 0.921 24 C -0.069 4.069 25 N -0.966 5.966 26 Si 0.953 3.047 27 H -0.298 1.298 28 H -0.304 1.304 29 H -0.269 1.269 30 H 0.047 0.953 31 H 0.048 0.952 32 H 0.048 0.952 33 H 0.049 0.951 34 H 0.059 0.941 35 H 0.057 0.943 36 H 0.059 0.941 37 H 0.083 0.917 38 H 0.048 0.952 39 H 0.411 0.589 40 H 0.079 0.921 41 H 0.093 0.907 42 H 0.097 0.903 43 H 0.090 0.910 44 H 0.111 0.889 45 H 0.114 0.886 46 H 0.119 0.881 47 H 0.095 0.905 48 H 0.099 0.901 49 H 0.373 0.627 50 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.476 8.829 3.786 17.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.129 4.129 3 C -0.198 4.198 4 C 0.063 3.937 5 H 0.076 0.924 6 C -0.002 4.002 7 N -0.359 5.359 8 C 0.309 3.691 9 O -0.462 6.462 10 C -0.119 4.119 11 H 0.126 0.874 12 C -0.140 4.140 13 C -0.068 4.068 14 C -0.174 4.174 15 N -0.163 5.163 16 N -0.105 5.105 17 N -0.069 5.069 18 C -0.073 4.073 19 C -0.149 4.149 20 C -0.053 4.053 21 N -0.366 5.366 22 C -0.342 4.342 23 H 0.097 0.903 24 C -0.261 4.261 25 N -0.617 5.617 26 Si 0.784 3.216 27 H -0.226 1.226 28 H -0.232 1.232 29 H -0.193 1.193 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.101 0.899 38 H 0.066 0.934 39 H 0.248 0.752 40 H 0.097 0.903 41 H 0.112 0.888 42 H 0.116 0.884 43 H 0.108 0.892 44 H 0.130 0.870 45 H 0.133 0.867 46 H 0.138 0.862 47 H 0.113 0.887 48 H 0.117 0.883 49 H 0.205 0.795 50 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 15.722 8.562 4.526 18.465 hybrid contribution -1.546 -0.884 -0.651 1.896 sum 14.176 7.678 3.875 16.581 Atomic orbital electron populations 1.21739 0.95641 1.01688 1.00220 1.21633 0.96231 0.96345 0.98657 1.21849 1.00988 0.94921 1.02072 1.20687 0.90396 0.85949 0.96639 0.92357 1.21609 0.94275 0.95711 0.88648 1.45988 1.06967 1.52459 1.30490 1.20637 0.82147 0.80375 0.85976 1.90652 1.56026 1.50481 1.49038 1.21278 0.95652 1.01145 0.93830 0.87429 1.21602 1.02891 0.98693 0.90834 1.20006 0.86632 1.00053 1.00118 1.22155 0.99762 1.04933 0.90543 1.74730 0.97729 1.16602 1.27194 1.78473 1.16299 1.21613 0.94091 1.47195 1.11152 1.37892 1.10702 1.22755 0.84065 1.07074 0.93441 1.22002 0.86387 1.06038 1.00445 1.19855 0.93547 1.01885 0.90014 1.42570 1.17168 1.03431 1.73430 1.19444 0.93254 0.91941 1.29584 0.90330 1.25273 1.00865 0.96310 1.03682 1.69785 1.38210 0.99662 1.54074 0.85439 0.81467 0.76676 0.77995 1.22586 1.23173 1.19341 0.93393 0.93303 0.93269 0.93272 0.92153 0.92364 0.92191 0.89907 0.93354 0.75183 0.90262 0.88801 0.88434 0.89160 0.87019 0.86746 0.86227 0.88666 0.88286 0.79528 0.94569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.42 8.26 71.98 0.59 -3.83 16 2 C -0.11 -3.24 2.69 -10.80 -0.03 -3.27 16 3 C -0.14 -3.25 8.84 71.98 0.64 -2.62 16 4 C 0.17 5.59 2.18 44.99 0.10 5.69 16 5 H 0.06 1.88 8.08 -2.39 -0.02 1.86 16 6 C 0.12 3.57 4.73 86.38 0.41 3.98 16 7 N -0.71 -19.71 5.21 -463.03 -2.41 -22.12 16 8 C 0.52 13.94 7.15 87.66 0.63 14.56 16 9 O -0.58 -18.58 15.82 -3.06 -0.05 -18.62 16 10 C -0.10 -2.04 2.50 -11.36 -0.03 -2.07 16 11 H 0.11 2.31 8.12 -2.39 -0.02 2.29 16 12 C -0.10 -1.85 5.17 30.77 0.16 -1.69 16 13 C -0.03 -0.58 6.30 29.94 0.19 -0.39 16 14 C -0.03 -0.82 7.11 41.74 0.30 -0.53 16 15 N -0.30 -9.04 12.40 -49.02 -0.61 -9.65 16 16 N -0.13 -3.54 13.19 37.02 0.49 -3.05 16 17 N -0.28 -5.82 3.73 -356.40 -1.33 -7.15 16 18 C 0.07 0.64 11.27 127.77 1.44 2.08 16 19 C -0.01 -0.29 6.76 41.50 0.28 -0.01 16 20 C -0.01 -0.26 4.71 29.94 0.14 -0.12 16 21 N -0.73 -30.61 4.44 -322.95 -1.43 -32.04 16 22 C -0.21 -10.00 7.57 84.03 0.64 -9.36 16 23 H 0.08 3.61 7.39 -2.91 -0.02 3.59 16 24 C -0.07 -3.59 5.50 84.86 0.47 -3.12 16 25 N -0.97 -54.56 13.06 21.65 0.28 -54.28 16 26 Si 0.95 43.15 29.55 68.60 2.03 45.18 16 27 H -0.30 -13.68 7.11 99.48 0.71 -12.97 16 28 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 29 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 30 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.05 1.98 6.01 -2.39 -0.01 1.96 16 33 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.06 1.30 6.54 -2.39 -0.02 1.28 16 35 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 37 H 0.08 2.18 6.71 -2.39 -0.02 2.17 16 38 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.41 11.65 7.47 -92.71 -0.69 10.95 16 40 H 0.08 1.37 8.12 -2.39 -0.02 1.35 16 41 H 0.09 1.60 7.31 -2.39 -0.02 1.58 16 42 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 44 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 45 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 46 H 0.12 0.72 7.71 -2.38 -0.02 0.70 16 47 H 0.09 1.66 7.87 -2.39 -0.02 1.64 16 48 H 0.10 1.88 7.78 -2.39 -0.02 1.86 16 49 H 0.37 17.65 7.80 -92.71 -0.72 16.93 16 50 H 0.25 13.84 8.31 -92.71 -0.77 13.07 16 Total: -1.00 -67.43 396.09 2.43 -65.00 By element: Atomic # 1 Polarization: 37.89 SS G_CDS: -0.46 Total: 37.43 kcal Atomic # 6 Polarization: -6.61 SS G_CDS: 5.92 Total: -0.69 kcal Atomic # 7 Polarization: -123.28 SS G_CDS: -5.01 Total: -128.29 kcal Atomic # 8 Polarization: -18.58 SS G_CDS: -0.05 Total: -18.62 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -67.43 2.43 -65.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482549420.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.227 kcal (2) G-P(sol) polarization free energy of solvation -67.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.32 seconds