Wall clock time and date at job start Tue Mar 31 2020 18:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.36603 * 126.57827 * 2 1 4 4 C 1.47522 * 125.76730 * 0.03296 * 3 2 1 5 5 O 1.21592 * 120.00276 * 359.72343 * 4 3 2 6 6 N 1.34784 * 119.99823 * 179.71374 * 4 3 2 7 7 C 1.47426 * 125.64751 * 4.83407 * 6 4 3 8 8 C 1.54910 * 104.83360 * 155.88702 * 7 6 4 9 9 C 1.55158 * 101.57889 * 37.00996 * 8 7 6 10 10 C 1.47015 * 125.64911 * 184.85139 * 6 4 3 11 11 H 1.08994 * 110.01586 * 300.53452 * 10 6 4 12 12 C 1.53002 * 109.88157 * 61.62717 * 10 6 4 13 13 N 1.46501 * 109.47172 * 184.17187 * 12 10 6 14 14 C 1.46501 * 119.99949 * 267.65202 * 13 12 10 15 15 C 1.36932 * 119.99731 * 87.65535 * 13 12 10 16 16 H 1.07993 * 120.00341 * 335.61893 * 15 13 12 17 17 C 1.38814 * 119.99877 * 155.63080 * 15 13 12 18 18 N 1.31614 * 120.00256 * 159.27024 * 17 15 13 19 19 Si 1.86799 * 119.99988 * 339.54114 * 17 15 13 20 20 H 1.48506 * 109.47231 * 85.73396 * 19 17 15 21 21 H 1.48500 * 109.47444 * 205.73776 * 19 17 15 22 22 H 1.48506 * 109.47044 * 325.73906 * 19 17 15 23 23 N 1.34393 * 108.45725 * 179.77289 * 3 2 1 24 24 N 1.28761 * 109.52458 * 0.22583 * 23 3 2 25 25 N 1.34815 * 126.58356 * 180.16430 * 2 1 3 26 26 C 1.46496 * 126.59258 * 0.02562 * 25 2 1 27 27 C 1.53003 * 109.47020 * 120.27335 * 26 25 2 28 28 C 1.53001 * 109.46848 * 240.27428 * 26 25 2 29 29 H 1.09005 * 109.47047 * 90.02759 * 1 2 3 30 30 H 1.08999 * 109.47159 * 210.02315 * 1 2 3 31 31 H 1.09004 * 109.47430 * 330.02750 * 1 2 3 32 32 H 1.09011 * 110.36757 * 37.05089 * 7 6 4 33 33 H 1.08994 * 110.45965 * 274.77947 * 7 6 4 34 34 H 1.09000 * 111.00521 * 278.93458 * 8 7 6 35 35 H 1.09000 * 111.00113 * 155.08042 * 8 7 6 36 36 H 1.08995 * 110.71987 * 206.13211 * 9 8 7 37 37 H 1.09007 * 110.71807 * 82.85686 * 9 8 7 38 38 H 1.09008 * 109.47077 * 64.16966 * 12 10 6 39 39 H 1.08994 * 109.47275 * 304.17229 * 12 10 6 40 40 H 1.09003 * 109.47189 * 267.39745 * 14 13 12 41 41 H 1.08998 * 109.46944 * 27.39148 * 14 13 12 42 42 H 1.08996 * 109.47267 * 147.39450 * 14 13 12 43 43 H 0.96998 * 120.00338 * 179.97438 * 18 17 15 44 44 H 1.09000 * 109.47067 * 0.27066 * 26 25 2 45 45 H 1.09001 * 109.46691 * 179.97438 * 27 26 25 46 46 H 1.08998 * 109.46764 * 299.99542 * 27 26 25 47 47 H 1.09001 * 109.46899 * 60.00005 * 27 26 25 48 48 H 1.08997 * 109.47352 * 60.00505 * 28 26 25 49 49 H 1.09011 * 109.46952 * 180.02562 * 28 26 25 50 50 H 1.09000 * 109.46991 * 299.99684 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3210 1.0970 0.0000 4 6 1.8736 2.5027 0.0007 5 8 0.6858 2.7628 -0.0038 6 7 2.7815 3.4989 0.0064 7 6 4.2430 3.3299 -0.0885 8 6 4.7619 4.6758 -0.6535 9 6 3.8217 5.6912 0.0482 10 6 2.4785 4.9338 0.1088 11 1 1.8420 5.2408 -0.7210 12 6 1.7771 5.2240 1.4373 13 7 1.3905 6.6362 1.4872 14 6 2.2935 7.6221 2.0862 15 6 0.1852 7.0346 0.9739 16 1 -0.2980 6.4441 0.2096 17 6 -0.4156 8.1976 1.4358 18 7 -1.3262 8.8035 0.7037 19 14 0.0738 8.9070 3.0931 20 1 1.2661 9.7766 2.9267 21 1 -1.0506 9.7079 3.6403 22 1 0.3953 7.8003 4.0298 23 7 3.5983 0.6790 0.0051 24 7 3.6298 -0.6082 0.0034 25 7 2.3104 -1.0825 -0.0031 26 6 1.8864 -2.4848 -0.0077 27 6 2.4354 -3.1795 -1.2555 28 6 2.4231 -3.1838 1.2431 29 1 -0.3633 -0.0005 -1.0277 30 1 -0.3633 -0.8898 0.5142 31 1 -0.3634 0.8902 0.5134 32 1 4.4871 2.5137 -0.7686 33 1 4.6696 3.1422 0.8967 34 1 4.6431 4.7168 -1.7362 35 1 5.8006 4.8442 -0.3693 36 1 3.7252 6.6007 -0.5447 37 1 4.1811 5.9199 1.0516 38 1 2.4551 5.0035 2.2619 39 1 0.8871 4.6005 1.5221 40 1 2.0465 7.7476 3.1405 41 1 3.3228 7.2758 1.9930 42 1 2.1830 8.5762 1.5710 43 1 -1.7462 9.6160 1.0266 44 1 0.7976 -2.5351 -0.0131 45 1 2.1202 -4.2230 -1.2586 46 1 2.0530 -2.6815 -2.1464 47 1 3.5242 -3.1292 -1.2500 48 1 2.0319 -2.6890 2.1320 49 1 2.1079 -4.2274 1.2395 50 1 3.5119 -3.1335 1.2485 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485073717.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:22 Heat of formation + Delta-G solvation = 93.432427 kcal Electronic energy + Delta-G solvation = -30182.152494 eV Core-core repulsion = 26247.876140 eV Total energy + Delta-G solvation = -3934.276354 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -42.38113 -39.67196 -37.30448 -36.69352 -35.47246 -33.17926 -31.91001 -31.42177 -30.77803 -29.49473 -27.87871 -27.83874 -26.35593 -25.13301 -24.18929 -23.87396 -21.92836 -21.18256 -20.48860 -20.25399 -18.79319 -17.44833 -16.66212 -16.45544 -16.22536 -16.05321 -15.18434 -15.10313 -14.79355 -14.32930 -14.12591 -13.90753 -13.58013 -13.45716 -13.39050 -13.24573 -13.17265 -12.88002 -12.80180 -12.77425 -12.58276 -12.16851 -12.12272 -12.04889 -11.97986 -11.74817 -11.65429 -11.31926 -11.25172 -10.85750 -10.69111 -10.45856 -10.31990 -10.18093 -10.02313 -9.88520 -9.65468 -9.34928 -9.16627 -8.60481 -8.23612 -6.86655 -5.83548 -3.19030 1.04318 1.76758 1.81955 3.20745 3.42077 3.48922 3.56632 3.60138 3.89952 4.08093 4.26388 4.37989 4.42778 4.61942 4.64456 4.85128 4.85518 4.97294 5.00864 5.09924 5.14994 5.18636 5.22076 5.24618 5.32230 5.45891 5.50883 5.53603 5.57707 5.64298 5.68951 5.77695 5.87839 5.93874 6.04453 6.11843 6.22892 6.27179 6.32681 6.35788 6.40287 6.56736 6.64346 6.74484 6.82015 7.03915 7.78926 7.92078 8.07414 8.42709 8.47859 9.07410 9.84747 10.15598 11.33003 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.018541 B = 0.002921 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.813230 B = 9584.943495 C =10400.405925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.122 3.878 3 C -0.096 4.096 4 C 0.611 3.389 5 O -0.526 6.526 6 N -0.598 5.598 7 C 0.107 3.893 8 C -0.137 4.137 9 C -0.118 4.118 10 C 0.118 3.882 11 H 0.083 0.917 12 C 0.147 3.853 13 N -0.606 5.606 14 C 0.099 3.901 15 C -0.256 4.256 16 H 0.089 0.911 17 C 0.022 3.978 18 N -0.911 5.911 19 Si 0.893 3.107 20 H -0.289 1.289 21 H -0.308 1.308 22 H -0.280 1.280 23 N -0.203 5.203 24 N -0.073 5.073 25 N -0.359 5.359 26 C 0.144 3.856 27 C -0.162 4.162 28 C -0.163 4.163 29 H 0.091 0.909 30 H 0.072 0.928 31 H 0.116 0.884 32 H 0.085 0.915 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.074 0.926 38 H 0.037 0.963 39 H 0.066 0.934 40 H 0.008 0.992 41 H 0.039 0.961 42 H 0.055 0.945 43 H 0.261 0.739 44 H 0.109 0.891 45 H 0.081 0.919 46 H 0.064 0.936 47 H 0.074 0.926 48 H 0.064 0.936 49 H 0.081 0.919 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.654 -24.672 -2.478 26.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.016 4.016 3 C -0.236 4.236 4 C 0.397 3.603 5 O -0.401 6.401 6 N -0.331 5.331 7 C -0.017 4.017 8 C -0.175 4.175 9 C -0.156 4.156 10 C 0.014 3.986 11 H 0.101 0.899 12 C 0.019 3.981 13 N -0.330 5.330 14 C -0.046 4.046 15 C -0.385 4.385 16 H 0.107 0.893 17 C -0.176 4.176 18 N -0.554 5.554 19 Si 0.725 3.275 20 H -0.216 1.216 21 H -0.237 1.237 22 H -0.206 1.206 23 N -0.076 5.076 24 N -0.052 5.052 25 N -0.146 5.146 26 C 0.042 3.958 27 C -0.220 4.220 28 C -0.221 4.221 29 H 0.110 0.890 30 H 0.091 0.909 31 H 0.134 0.866 32 H 0.103 0.897 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.097 0.903 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.055 0.945 39 H 0.085 0.915 40 H 0.025 0.975 41 H 0.057 0.943 42 H 0.074 0.926 43 H 0.071 0.929 44 H 0.127 0.873 45 H 0.100 0.900 46 H 0.083 0.917 47 H 0.093 0.907 48 H 0.083 0.917 49 H 0.100 0.900 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 11.320 -24.872 -2.483 27.439 hybrid contribution -0.693 0.560 0.976 1.321 sum 10.627 -24.312 -1.507 26.576 Atomic orbital electron populations 1.20746 0.84719 1.05457 1.04685 1.21926 0.96255 0.86299 0.97077 1.21262 0.88892 0.95423 1.17976 1.16315 0.84918 0.81718 0.77309 1.90829 1.15289 1.82996 1.51019 1.48326 1.06834 1.06721 1.71243 1.22380 0.79906 0.98095 1.01270 1.22842 0.99413 0.94734 1.00536 1.22682 0.93675 0.98045 1.01181 1.22516 0.96868 0.77131 1.02120 0.89923 1.21051 0.98179 0.86278 0.92603 1.44073 1.17596 1.01250 1.70064 1.21499 0.92867 0.94186 0.96009 1.18955 0.95617 1.07950 1.15930 0.89327 1.25185 0.96820 0.97534 0.98061 1.69847 1.30267 1.18801 1.36518 0.86939 0.75729 0.78098 0.86752 1.21631 1.23665 1.20620 1.74675 1.19111 1.03810 1.10005 1.81879 0.96426 1.03559 1.23338 1.50582 1.06342 1.07107 1.50576 1.21622 1.00515 0.75411 0.98209 1.22148 1.03124 1.00820 0.95863 1.22162 1.03211 1.00809 0.95884 0.89045 0.90933 0.86578 0.89702 0.91614 0.90998 0.90303 0.89996 0.90783 0.94466 0.91541 0.97479 0.94266 0.92626 0.92919 0.87297 0.89979 0.91706 0.90738 0.91682 0.89983 0.90728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.94 9.40 36.00 0.34 -0.60 16 2 C 0.12 1.48 7.02 -81.88 -0.57 0.90 16 3 C -0.10 -1.44 6.83 -83.55 -0.57 -2.01 16 4 C 0.61 10.74 7.58 -12.47 -0.09 10.65 16 5 O -0.53 -10.61 13.89 5.28 0.07 -10.53 16 6 N -0.60 -10.04 3.06 -164.24 -0.50 -10.55 16 7 C 0.11 1.45 5.96 -2.53 -0.02 1.44 16 8 C -0.14 -1.69 7.09 -24.58 -0.17 -1.86 16 9 C -0.12 -1.80 5.54 -24.89 -0.14 -1.94 16 10 C 0.12 2.20 3.09 -66.95 -0.21 1.99 16 11 H 0.08 1.78 8.14 -51.93 -0.42 1.36 16 12 C 0.15 3.14 5.12 -4.04 -0.02 3.12 16 13 N -0.61 -14.93 2.61 -181.12 -0.47 -15.41 16 14 C 0.10 2.21 8.00 59.85 0.48 2.69 16 15 C -0.26 -7.45 10.06 -15.06 -0.15 -7.60 16 16 H 0.09 2.80 8.06 -52.49 -0.42 2.38 16 17 C 0.02 0.66 5.26 -17.43 -0.09 0.57 16 18 N -0.91 -28.80 13.97 55.49 0.78 -28.02 16 19 Si 0.89 23.48 23.94 -169.99 -4.07 19.41 16 20 H -0.29 -7.23 6.54 56.52 0.37 -6.86 16 21 H -0.31 -8.23 7.11 56.52 0.40 -7.83 16 22 H -0.28 -7.34 6.67 56.52 0.38 -6.96 16 23 N -0.20 -2.94 9.53 32.85 0.31 -2.63 16 24 N -0.07 -0.95 13.67 60.35 0.82 -0.12 16 25 N -0.36 -3.74 3.28 -50.41 -0.17 -3.91 16 26 C 0.14 0.89 3.68 -67.93 -0.25 0.64 16 27 C -0.16 -0.83 9.47 37.16 0.35 -0.48 16 28 C -0.16 -0.86 9.47 37.16 0.35 -0.51 16 29 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.07 0.46 7.20 -51.93 -0.37 0.09 16 31 H 0.12 1.42 6.43 -51.93 -0.33 1.09 16 32 H 0.08 1.14 6.46 -51.92 -0.34 0.80 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.07 1.10 6.11 -51.93 -0.32 0.79 16 38 H 0.04 0.74 7.96 -51.92 -0.41 0.32 16 39 H 0.07 1.58 6.81 -51.93 -0.35 1.23 16 40 H 0.01 0.17 4.92 -51.93 -0.26 -0.08 16 41 H 0.04 0.72 5.84 -51.93 -0.30 0.42 16 42 H 0.06 1.31 6.39 -51.93 -0.33 0.98 16 43 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 44 H 0.11 0.45 6.79 -51.93 -0.35 0.10 16 45 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 46 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 49 H 0.08 0.24 8.14 -51.92 -0.42 -0.19 16 50 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 386.80 15.07 5.83 5.83 Total: -1.00 -35.24 386.80 -6.22 -41.46 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -8.06 Total: -2.53 kcal Atomic # 6 Polarization: 7.77 SS G_CDS: -0.77 Total: 7.00 kcal Atomic # 7 Polarization: -61.41 SS G_CDS: 0.77 Total: -60.64 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: 0.07 Total: -10.53 kcal Atomic # 14 Polarization: 23.48 SS G_CDS: -4.07 Total: 19.41 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.24 -6.22 -41.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485073717.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.896 kcal (2) G-P(sol) polarization free energy of solvation -35.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds