Wall clock time and date at job start Tue Mar 31 2020 18:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.36603 * 126.57827 * 2 1 4 4 C 1.47522 * 125.76730 * 0.03296 * 3 2 1 5 5 O 1.21592 * 120.00276 * 359.72343 * 4 3 2 6 6 N 1.34784 * 119.99823 * 179.71374 * 4 3 2 7 7 C 1.47426 * 125.64751 * 4.83407 * 6 4 3 8 8 C 1.54910 * 104.83360 * 155.88702 * 7 6 4 9 9 C 1.55158 * 101.57889 * 37.00996 * 8 7 6 10 10 C 1.47015 * 125.64911 * 184.85139 * 6 4 3 11 11 H 1.08994 * 110.01586 * 300.53452 * 10 6 4 12 12 C 1.53002 * 109.88157 * 61.62717 * 10 6 4 13 13 N 1.46501 * 109.47172 * 184.17187 * 12 10 6 14 14 C 1.46501 * 119.99949 * 267.65202 * 13 12 10 15 15 C 1.36932 * 119.99731 * 87.65535 * 13 12 10 16 16 H 1.07993 * 120.00341 * 335.61893 * 15 13 12 17 17 C 1.38814 * 119.99877 * 155.63080 * 15 13 12 18 18 N 1.31614 * 120.00256 * 159.27024 * 17 15 13 19 19 Si 1.86799 * 119.99988 * 339.54114 * 17 15 13 20 20 H 1.48506 * 109.47231 * 85.73396 * 19 17 15 21 21 H 1.48500 * 109.47444 * 205.73776 * 19 17 15 22 22 H 1.48506 * 109.47044 * 325.73906 * 19 17 15 23 23 N 1.34393 * 108.45725 * 179.77289 * 3 2 1 24 24 N 1.28761 * 109.52458 * 0.22583 * 23 3 2 25 25 N 1.34815 * 126.58356 * 180.16430 * 2 1 3 26 26 C 1.46496 * 126.59258 * 0.02562 * 25 2 1 27 27 C 1.53003 * 109.47020 * 120.27335 * 26 25 2 28 28 C 1.53001 * 109.46848 * 240.27428 * 26 25 2 29 29 H 1.09005 * 109.47047 * 90.02759 * 1 2 3 30 30 H 1.08999 * 109.47159 * 210.02315 * 1 2 3 31 31 H 1.09004 * 109.47430 * 330.02750 * 1 2 3 32 32 H 1.09011 * 110.36757 * 37.05089 * 7 6 4 33 33 H 1.08994 * 110.45965 * 274.77947 * 7 6 4 34 34 H 1.09000 * 111.00521 * 278.93458 * 8 7 6 35 35 H 1.09000 * 111.00113 * 155.08042 * 8 7 6 36 36 H 1.08995 * 110.71987 * 206.13211 * 9 8 7 37 37 H 1.09007 * 110.71807 * 82.85686 * 9 8 7 38 38 H 1.09008 * 109.47077 * 64.16966 * 12 10 6 39 39 H 1.08994 * 109.47275 * 304.17229 * 12 10 6 40 40 H 1.09003 * 109.47189 * 267.39745 * 14 13 12 41 41 H 1.08998 * 109.46944 * 27.39148 * 14 13 12 42 42 H 1.08996 * 109.47267 * 147.39450 * 14 13 12 43 43 H 0.96998 * 120.00338 * 179.97438 * 18 17 15 44 44 H 1.09000 * 109.47067 * 0.27066 * 26 25 2 45 45 H 1.09001 * 109.46691 * 179.97438 * 27 26 25 46 46 H 1.08998 * 109.46764 * 299.99542 * 27 26 25 47 47 H 1.09001 * 109.46899 * 60.00005 * 27 26 25 48 48 H 1.08997 * 109.47352 * 60.00505 * 28 26 25 49 49 H 1.09011 * 109.46952 * 180.02562 * 28 26 25 50 50 H 1.09000 * 109.46991 * 299.99684 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3210 1.0970 0.0000 4 6 1.8736 2.5027 0.0007 5 8 0.6858 2.7628 -0.0038 6 7 2.7815 3.4989 0.0064 7 6 4.2430 3.3299 -0.0885 8 6 4.7619 4.6758 -0.6535 9 6 3.8217 5.6912 0.0482 10 6 2.4785 4.9338 0.1088 11 1 1.8420 5.2408 -0.7210 12 6 1.7771 5.2240 1.4373 13 7 1.3905 6.6362 1.4872 14 6 2.2935 7.6221 2.0862 15 6 0.1852 7.0346 0.9739 16 1 -0.2980 6.4441 0.2096 17 6 -0.4156 8.1976 1.4358 18 7 -1.3262 8.8035 0.7037 19 14 0.0738 8.9070 3.0931 20 1 1.2661 9.7766 2.9267 21 1 -1.0506 9.7079 3.6403 22 1 0.3953 7.8003 4.0298 23 7 3.5983 0.6790 0.0051 24 7 3.6298 -0.6082 0.0034 25 7 2.3104 -1.0825 -0.0031 26 6 1.8864 -2.4848 -0.0077 27 6 2.4354 -3.1795 -1.2555 28 6 2.4231 -3.1838 1.2431 29 1 -0.3633 -0.0005 -1.0277 30 1 -0.3633 -0.8898 0.5142 31 1 -0.3634 0.8902 0.5134 32 1 4.4871 2.5137 -0.7686 33 1 4.6696 3.1422 0.8967 34 1 4.6431 4.7168 -1.7362 35 1 5.8006 4.8442 -0.3693 36 1 3.7252 6.6007 -0.5447 37 1 4.1811 5.9199 1.0516 38 1 2.4551 5.0035 2.2619 39 1 0.8871 4.6005 1.5221 40 1 2.0465 7.7476 3.1405 41 1 3.3228 7.2758 1.9930 42 1 2.1830 8.5762 1.5710 43 1 -1.7462 9.6160 1.0266 44 1 0.7976 -2.5351 -0.0131 45 1 2.1202 -4.2230 -1.2586 46 1 2.0530 -2.6815 -2.1464 47 1 3.5242 -3.1292 -1.2500 48 1 2.0319 -2.6890 2.1320 49 1 2.1079 -4.2274 1.2395 50 1 3.5119 -3.1335 1.2485 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485073717.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:21 Heat of formation + Delta-G solvation = 68.849744 kcal Electronic energy + Delta-G solvation = -30183.218479 eV Core-core repulsion = 26247.876140 eV Total energy + Delta-G solvation = -3935.342339 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.36464 -41.02506 -38.74686 -37.43518 -37.24304 -34.03815 -33.85619 -32.86234 -31.81433 -30.98417 -28.79802 -28.27702 -28.14948 -26.95030 -25.31033 -24.83549 -23.25062 -22.73269 -21.65277 -21.27124 -20.06042 -18.85892 -18.34067 -17.67242 -17.24279 -17.18130 -17.14114 -16.46254 -15.71848 -15.43575 -15.31782 -15.28099 -15.07301 -14.94178 -14.42600 -14.28707 -14.16219 -14.04989 -13.99393 -13.92586 -13.76639 -13.28351 -13.20052 -13.18764 -13.05628 -12.92921 -12.56616 -12.52911 -12.50687 -12.19027 -12.12048 -12.01617 -11.77890 -11.75183 -11.60093 -11.37661 -11.14639 -11.01560 -10.72336 -10.24753 -9.71504 -8.90479 -8.15240 -5.48334 0.09188 0.61608 1.02211 1.32043 1.42527 1.52185 1.92703 2.20249 2.43122 3.07042 3.13195 3.25424 3.39644 3.49004 3.64654 3.74678 3.80966 3.84801 3.97380 4.03371 4.10101 4.30700 4.37329 4.44574 4.49587 4.55537 4.58982 4.61231 4.63595 4.67633 4.68004 4.75213 4.81457 4.86255 4.90522 4.97096 4.99850 5.07773 5.11369 5.13069 5.17970 5.18569 5.22436 5.40013 5.49029 5.56241 5.85378 6.13192 6.50427 6.84547 6.91937 7.13283 7.63574 7.95511 9.05573 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.018541 B = 0.002921 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.813230 B = 9584.943495 C =10400.405925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.129 3.871 3 C -0.125 4.125 4 C 0.605 3.395 5 O -0.566 6.566 6 N -0.601 5.601 7 C 0.107 3.893 8 C -0.122 4.122 9 C -0.112 4.112 10 C 0.125 3.875 11 H 0.038 0.962 12 C 0.152 3.848 13 N -0.616 5.616 14 C 0.097 3.903 15 C -0.248 4.248 16 H 0.041 0.959 17 C -0.036 4.036 18 N -0.959 5.959 19 Si 0.963 3.037 20 H -0.262 1.262 21 H -0.314 1.314 22 H -0.275 1.275 23 N -0.214 5.214 24 N -0.081 5.081 25 N -0.344 5.344 26 C 0.130 3.870 27 C -0.158 4.158 28 C -0.159 4.159 29 H 0.102 0.898 30 H 0.112 0.888 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.115 0.885 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.062 0.938 39 H 0.030 0.970 40 H 0.009 0.991 41 H 0.085 0.915 42 H 0.043 0.957 43 H 0.262 0.738 44 H 0.138 0.862 45 H 0.113 0.887 46 H 0.056 0.944 47 H 0.059 0.941 48 H 0.056 0.944 49 H 0.113 0.887 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.163 -26.715 -1.239 29.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.010 4.010 3 C -0.264 4.264 4 C 0.392 3.608 5 O -0.444 6.444 6 N -0.334 5.334 7 C -0.015 4.015 8 C -0.160 4.160 9 C -0.150 4.150 10 C 0.020 3.980 11 H 0.056 0.944 12 C 0.025 3.975 13 N -0.341 5.341 14 C -0.047 4.047 15 C -0.378 4.378 16 H 0.059 0.941 17 C -0.230 4.230 18 N -0.606 5.606 19 Si 0.792 3.208 20 H -0.187 1.187 21 H -0.243 1.243 22 H -0.201 1.201 23 N -0.087 5.087 24 N -0.060 5.060 25 N -0.131 5.131 26 C 0.031 3.969 27 C -0.215 4.215 28 C -0.217 4.217 29 H 0.121 0.879 30 H 0.130 0.870 31 H 0.105 0.895 32 H 0.106 0.894 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.133 0.867 36 H 0.095 0.905 37 H 0.106 0.894 38 H 0.080 0.920 39 H 0.049 0.951 40 H 0.027 0.973 41 H 0.103 0.897 42 H 0.061 0.939 43 H 0.071 0.929 44 H 0.155 0.845 45 H 0.131 0.869 46 H 0.075 0.925 47 H 0.079 0.921 48 H 0.075 0.925 49 H 0.131 0.869 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 13.910 -26.969 -1.243 30.371 hybrid contribution -1.516 0.978 0.506 1.874 sum 12.394 -25.992 -0.737 28.805 Atomic orbital electron populations 1.20789 0.83086 1.05907 1.05515 1.22202 0.97191 0.86052 0.95537 1.21024 0.89975 0.94608 1.20794 1.16773 0.84549 0.82994 0.76457 1.90804 1.16977 1.83884 1.52782 1.48424 1.08381 1.05692 1.70865 1.22555 0.77688 0.99127 1.02097 1.22843 1.00494 0.92314 1.00310 1.22628 0.92029 0.98023 1.02329 1.22162 0.98158 0.79107 0.98572 0.94374 1.21054 0.97409 0.84074 0.94979 1.44109 1.16744 1.03045 1.70187 1.21598 0.94675 0.93165 0.95273 1.18739 0.97280 1.07131 1.14659 0.94140 1.25856 0.97399 0.98274 1.01499 1.69986 1.32431 1.19783 1.38363 0.85813 0.76082 0.77597 0.81333 1.18721 1.24315 1.20144 1.74624 1.18957 1.04502 1.10584 1.81779 0.97944 1.02998 1.23314 1.50916 1.05126 1.08310 1.48726 1.22212 1.02346 0.73071 0.99258 1.22153 1.02133 1.02425 0.94822 1.22168 1.02216 1.02427 0.94849 0.87919 0.86973 0.89537 0.89370 0.90559 0.90842 0.86659 0.90548 0.89400 0.91973 0.95144 0.97339 0.89710 0.93859 0.92906 0.84454 0.86872 0.92459 0.92150 0.92518 0.86860 0.92157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.76 9.40 71.23 0.67 -1.09 16 2 C 0.13 3.07 7.02 41.72 0.29 3.36 16 3 C -0.12 -3.79 6.83 40.82 0.28 -3.51 16 4 C 0.60 22.30 7.58 86.69 0.66 22.96 16 5 O -0.57 -24.68 13.89 -4.01 -0.06 -24.74 16 6 N -0.60 -20.64 3.06 -791.78 -2.43 -23.06 16 7 C 0.11 2.77 5.96 86.86 0.52 3.29 16 8 C -0.12 -2.68 7.09 31.99 0.23 -2.45 16 9 C -0.11 -3.23 5.54 31.78 0.18 -3.06 16 10 C 0.13 4.80 3.09 45.34 0.14 4.94 16 11 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 12 C 0.15 6.63 5.12 86.38 0.44 7.07 16 13 N -0.62 -30.71 2.61 -726.94 -1.90 -32.61 16 14 C 0.10 4.10 8.00 127.77 1.02 5.12 16 15 C -0.25 -15.12 10.06 84.03 0.85 -14.28 16 16 H 0.04 2.79 8.06 -2.91 -0.02 2.77 16 17 C -0.04 -2.21 5.26 84.86 0.45 -1.76 16 18 N -0.96 -63.00 13.97 21.65 0.30 -62.70 16 19 Si 0.96 48.82 23.94 68.60 1.64 50.46 16 20 H -0.26 -12.07 6.54 99.48 0.65 -11.42 16 21 H -0.31 -16.15 7.11 99.48 0.71 -15.44 16 22 H -0.28 -13.66 6.67 99.48 0.66 -13.00 16 23 N -0.21 -6.11 9.53 -50.00 -0.48 -6.59 16 24 N -0.08 -2.03 13.67 37.02 0.51 -1.53 16 25 N -0.34 -6.67 3.28 -313.39 -1.03 -7.70 16 26 C 0.13 1.25 3.68 44.99 0.17 1.42 16 27 C -0.16 -1.21 9.47 71.98 0.68 -0.53 16 28 C -0.16 -1.25 9.47 71.98 0.68 -0.57 16 29 H 0.10 1.69 8.14 -2.38 -0.02 1.67 16 30 H 0.11 1.14 7.20 -2.39 -0.02 1.12 16 31 H 0.09 2.23 6.43 -2.38 -0.02 2.21 16 32 H 0.09 2.27 6.46 -2.38 -0.02 2.25 16 33 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 37 H 0.09 2.30 6.11 -2.38 -0.01 2.29 16 38 H 0.06 2.39 7.96 -2.38 -0.02 2.38 16 39 H 0.03 1.53 6.81 -2.39 -0.02 1.51 16 40 H 0.01 0.38 4.92 -2.39 -0.01 0.37 16 41 H 0.08 2.80 5.84 -2.39 -0.01 2.79 16 42 H 0.04 1.94 6.39 -2.39 -0.02 1.93 16 43 H 0.26 16.24 8.31 -92.71 -0.77 15.47 16 44 H 0.14 0.59 6.79 -2.39 -0.02 0.57 16 45 H 0.11 0.19 8.14 -2.39 -0.02 0.17 16 46 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 47 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 48 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 49 H 0.11 0.21 8.14 -2.38 -0.02 0.19 16 50 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 Total: -1.00 -82.77 386.80 4.65 -78.13 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: 0.84 Total: 9.44 kcal Atomic # 6 Polarization: 13.66 SS G_CDS: 7.24 Total: 20.90 kcal Atomic # 7 Polarization: -129.17 SS G_CDS: -5.02 Total: -134.19 kcal Atomic # 8 Polarization: -24.68 SS G_CDS: -0.06 Total: -24.74 kcal Atomic # 14 Polarization: 48.82 SS G_CDS: 1.64 Total: 50.46 kcal Total: -82.77 4.65 -78.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485073717.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.978 kcal (2) G-P(sol) polarization free energy of solvation -82.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds