Wall clock time and date at job start Tue Mar 31 2020 18:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.36601 * 126.58376 * 2 1 4 4 C 1.47524 * 125.76873 * 359.97438 * 3 2 1 5 5 O 1.21591 * 119.99774 * 0.02562 * 4 3 2 6 6 N 1.34770 * 119.99759 * 179.97438 * 4 3 2 7 7 C 1.47425 * 125.65198 * 4.59953 * 6 4 3 8 8 C 1.54909 * 104.83510 * 204.14832 * 7 6 4 9 9 C 1.55164 * 101.58004 * 322.98920 * 8 7 6 10 10 C 1.47032 * 125.64822 * 184.61761 * 6 4 3 11 11 H 1.09001 * 110.00311 * 59.43204 * 10 6 4 12 12 C 1.53000 * 109.88137 * 298.34222 * 10 6 4 13 13 N 1.46505 * 109.46866 * 175.44413 * 12 10 6 14 14 C 1.46500 * 119.99671 * 267.34436 * 13 12 10 15 15 C 1.36937 * 120.00100 * 87.34689 * 13 12 10 16 16 H 1.08003 * 119.99470 * 3.55470 * 15 13 12 17 17 C 1.38802 * 119.99847 * 183.55609 * 15 13 12 18 18 N 1.31622 * 120.00402 * 352.83134 * 17 15 13 19 19 Si 1.86802 * 119.99926 * 172.83255 * 17 15 13 20 20 H 1.48500 * 109.47279 * 269.99878 * 19 17 15 21 21 H 1.48500 * 109.46952 * 30.00034 * 19 17 15 22 22 H 1.48503 * 109.47140 * 149.99768 * 19 17 15 23 23 N 1.34402 * 108.45878 * 180.26580 * 3 2 1 24 24 N 1.28759 * 109.52089 * 359.58309 * 23 3 2 25 25 N 1.34818 * 126.57801 * 180.02562 * 2 1 3 26 26 C 1.46500 * 126.59653 * 359.94241 * 25 2 1 27 27 C 1.52995 * 109.47247 * 120.00014 * 26 25 2 28 28 C 1.53001 * 109.47160 * 240.00532 * 26 25 2 29 29 H 1.08999 * 109.47244 * 89.97177 * 1 2 3 30 30 H 1.08998 * 109.47198 * 209.97904 * 1 2 3 31 31 H 1.09001 * 109.47069 * 329.97742 * 1 2 3 32 32 H 1.09004 * 110.37000 * 85.30633 * 7 6 4 33 33 H 1.09007 * 110.45689 * 323.03087 * 7 6 4 34 34 H 1.08999 * 111.00718 * 204.91819 * 8 7 6 35 35 H 1.09000 * 111.00433 * 81.05974 * 8 7 6 36 36 H 1.09002 * 110.71440 * 277.13860 * 9 8 7 37 37 H 1.08997 * 110.87493 * 153.93829 * 9 8 7 38 38 H 1.08994 * 109.46967 * 55.44084 * 12 10 6 39 39 H 1.08997 * 109.46646 * 295.43978 * 12 10 6 40 40 H 1.09001 * 109.47232 * 242.04982 * 14 13 12 41 41 H 1.09003 * 109.47094 * 2.05078 * 14 13 12 42 42 H 1.09002 * 109.46722 * 122.04483 * 14 13 12 43 43 H 0.96995 * 120.00699 * 180.02562 * 18 17 15 44 44 H 1.08999 * 109.46542 * 359.97438 * 26 25 2 45 45 H 1.09004 * 109.47161 * 180.02562 * 27 26 25 46 46 H 1.09001 * 109.46951 * 300.00369 * 27 26 25 47 47 H 1.08999 * 109.47602 * 59.99970 * 27 26 25 48 48 H 1.08995 * 109.47617 * 59.99275 * 28 26 25 49 49 H 1.08997 * 109.47296 * 179.97438 * 28 26 25 50 50 H 1.09007 * 109.46434 * 299.99573 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3211 1.0969 0.0000 4 6 1.8738 2.5027 -0.0005 5 8 0.6861 2.7628 -0.0006 6 7 2.7818 3.4986 0.0000 7 6 4.2432 3.3291 -0.0948 8 6 4.8335 4.6059 0.5541 9 6 3.8254 5.6882 0.0853 10 6 2.4790 4.9342 0.0958 11 1 1.9452 5.1416 1.0232 12 6 1.6303 5.3679 -1.1011 13 7 1.2428 6.7718 -0.9418 14 6 -0.0291 7.1122 -0.2994 15 6 2.0694 7.7658 -1.3933 16 1 2.9794 7.5144 -1.9180 17 6 1.7378 9.0961 -1.1768 18 7 0.5657 9.4073 -0.6651 19 14 2.9549 10.4448 -1.6116 20 1 3.8202 10.7278 -0.4384 21 1 3.7967 10.0029 -2.7524 22 1 2.2154 11.6758 -1.9898 23 7 3.5984 0.6788 -0.0059 24 7 3.6298 -0.6084 -0.0008 25 7 2.3103 -1.0827 -0.0005 26 6 1.8863 -2.4849 0.0001 27 6 2.4280 -3.1821 -1.2494 28 6 2.4299 -3.1817 1.2490 29 1 -0.3634 0.0005 -1.0276 30 1 -0.3633 -0.8901 0.5135 31 1 -0.3633 0.8898 0.5142 32 1 4.5499 3.2575 -1.1384 33 1 4.5604 2.4429 0.4548 34 1 5.8334 4.8118 0.1722 35 1 4.8413 4.5239 1.6410 36 1 4.0677 6.0308 -0.9207 37 1 3.8035 6.5263 0.7818 38 1 0.7355 4.7479 -1.1556 39 1 2.2089 5.2525 -2.0175 40 1 -0.6642 7.6424 -1.0091 41 1 -0.5289 6.1990 0.0237 42 1 0.1595 7.7485 0.5653 43 1 0.3338 10.3369 -0.5142 44 1 0.7974 -2.5351 0.0014 45 1 2.1121 -4.2253 -1.2492 46 1 2.0406 -2.6856 -2.1392 47 1 3.5168 -3.1318 -1.2504 48 1 2.0441 -2.6850 2.1392 49 1 2.1141 -4.2249 1.2497 50 1 3.5188 -3.1313 1.2481 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485073718.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:27 Heat of formation + Delta-G solvation = 95.397513 kcal Electronic energy + Delta-G solvation = -30150.959682 eV Core-core repulsion = 26216.768540 eV Total energy + Delta-G solvation = -3934.191142 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.38102 -39.58580 -37.18054 -36.69951 -35.20213 -33.18665 -31.83655 -31.23930 -30.68103 -28.85601 -27.88447 -27.81652 -25.80718 -25.09610 -24.16294 -23.73188 -21.81246 -21.08331 -20.48565 -20.06590 -18.72719 -17.37383 -16.82647 -16.34363 -16.27712 -15.89517 -15.11881 -14.80179 -14.53002 -14.31465 -14.15295 -13.60083 -13.53585 -13.46875 -13.25606 -13.23559 -12.85238 -12.80378 -12.67699 -12.60623 -12.50592 -12.08202 -12.05114 -11.89862 -11.72302 -11.61627 -11.24412 -11.04657 -10.84531 -10.67198 -10.47055 -10.37057 -10.32917 -10.15464 -10.03214 -9.80052 -9.60074 -9.43088 -9.17183 -8.48202 -8.19093 -6.76907 -5.53469 -2.94879 1.04001 1.77250 1.81684 3.26913 3.44390 3.49709 3.50312 3.51616 3.89670 4.07625 4.25691 4.37251 4.44175 4.58287 4.63529 4.84614 4.96790 5.02126 5.03483 5.14369 5.16536 5.27390 5.32569 5.39466 5.46095 5.53271 5.55496 5.57268 5.70721 5.79308 5.81952 5.87325 5.98405 6.14312 6.19016 6.28023 6.31640 6.48847 6.56062 6.72054 6.78098 6.94729 7.00644 7.12260 7.78621 7.82418 7.85029 7.95531 8.06710 8.45703 8.50652 9.38165 10.02134 10.46687 11.45895 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.024686 B = 0.002696 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.960218 B =10384.375580 C =11102.520084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.120 3.880 3 C -0.094 4.094 4 C 0.611 3.389 5 O -0.535 6.535 6 N -0.595 5.595 7 C 0.099 3.901 8 C -0.140 4.140 9 C -0.108 4.108 10 C 0.117 3.883 11 H 0.069 0.931 12 C 0.148 3.852 13 N -0.607 5.607 14 C 0.170 3.830 15 C -0.237 4.237 16 H 0.074 0.926 17 C -0.008 4.008 18 N -0.918 5.918 19 Si 0.903 3.097 20 H -0.289 1.289 21 H -0.282 1.282 22 H -0.293 1.293 23 N -0.203 5.203 24 N -0.072 5.072 25 N -0.359 5.359 26 C 0.144 3.856 27 C -0.162 4.162 28 C -0.163 4.163 29 H 0.091 0.909 30 H 0.071 0.929 31 H 0.114 0.886 32 H 0.064 0.936 33 H 0.093 0.907 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.056 0.944 39 H 0.039 0.961 40 H 0.037 0.963 41 H -0.006 1.006 42 H 0.044 0.956 43 H 0.248 0.752 44 H 0.109 0.891 45 H 0.081 0.919 46 H 0.064 0.936 47 H 0.074 0.926 48 H 0.064 0.936 49 H 0.081 0.919 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.357 -26.654 3.046 27.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.018 4.018 3 C -0.234 4.234 4 C 0.397 3.603 5 O -0.412 6.412 6 N -0.327 5.327 7 C -0.024 4.024 8 C -0.178 4.178 9 C -0.146 4.146 10 C 0.012 3.988 11 H 0.088 0.912 12 C 0.020 3.980 13 N -0.330 5.330 14 C 0.026 3.974 15 C -0.366 4.366 16 H 0.092 0.908 17 C -0.203 4.203 18 N -0.566 5.566 19 Si 0.734 3.266 20 H -0.216 1.216 21 H -0.208 1.208 22 H -0.219 1.219 23 N -0.076 5.076 24 N -0.051 5.051 25 N -0.146 5.146 26 C 0.043 3.957 27 C -0.220 4.220 28 C -0.220 4.220 29 H 0.109 0.891 30 H 0.090 0.910 31 H 0.133 0.867 32 H 0.082 0.918 33 H 0.111 0.889 34 H 0.096 0.904 35 H 0.087 0.913 36 H 0.098 0.902 37 H 0.100 0.900 38 H 0.074 0.926 39 H 0.058 0.942 40 H 0.056 0.944 41 H 0.012 0.988 42 H 0.063 0.937 43 H 0.059 0.941 44 H 0.127 0.873 45 H 0.100 0.900 46 H 0.083 0.917 47 H 0.093 0.907 48 H 0.083 0.917 49 H 0.100 0.900 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.061 -26.805 3.055 27.283 hybrid contribution -0.191 0.907 -0.186 0.946 sum 3.869 -25.898 2.869 26.342 Atomic orbital electron populations 1.20722 0.84796 1.05266 1.04672 1.21906 0.96215 0.86314 0.97335 1.21293 0.88855 0.95472 1.17762 1.16305 0.84910 0.81714 0.77341 1.90767 1.15439 1.83100 1.51940 1.48448 1.06942 1.06840 1.70488 1.22520 0.79678 0.99268 1.00981 1.22868 0.99226 0.95209 1.00468 1.22569 0.92161 0.96739 1.03095 1.22733 0.97553 0.76525 1.01979 0.91240 1.21056 0.96893 0.86252 0.93844 1.44016 1.20226 0.99641 1.69132 1.21044 0.85489 0.93454 0.97418 1.19308 1.01857 0.85850 1.29631 0.90803 1.24845 0.97040 0.97241 1.01206 1.70247 1.19549 1.16362 1.50440 0.86246 0.80470 0.82019 0.77837 1.21649 1.20775 1.21910 1.74657 1.19089 1.03728 1.10091 1.81890 0.96407 1.03633 1.23209 1.50588 1.06357 1.07089 1.50579 1.21615 1.00465 0.75438 0.98218 1.22150 1.03199 1.00794 0.95856 1.22158 1.03210 1.00815 0.95866 0.89055 0.91009 0.86726 0.91792 0.88932 0.90409 0.91344 0.90228 0.90015 0.92571 0.94239 0.94445 0.98766 0.93728 0.94102 0.87340 0.89985 0.91685 0.90706 0.91731 0.89986 0.90704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.87 9.41 36.00 0.34 -0.53 16 2 C 0.12 1.43 7.02 -81.88 -0.57 0.85 16 3 C -0.09 -1.42 6.84 -83.55 -0.57 -1.99 16 4 C 0.61 10.73 7.66 -12.48 -0.10 10.64 16 5 O -0.54 -10.42 13.53 5.29 0.07 -10.35 16 6 N -0.59 -10.38 3.06 -164.23 -0.50 -10.89 16 7 C 0.10 1.46 6.28 -2.53 -0.02 1.45 16 8 C -0.14 -1.97 7.09 -24.58 -0.17 -2.15 16 9 C -0.11 -1.93 5.47 -24.89 -0.14 -2.06 16 10 C 0.12 2.30 3.15 -66.95 -0.21 2.09 16 11 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 12 C 0.15 3.33 5.17 -4.04 -0.02 3.31 16 13 N -0.61 -15.82 2.90 -181.12 -0.52 -16.35 16 14 C 0.17 4.52 8.99 59.85 0.54 5.06 16 15 C -0.24 -6.49 8.63 -15.06 -0.13 -6.62 16 16 H 0.07 1.95 6.90 -52.48 -0.36 1.59 16 17 C -0.01 -0.21 5.44 -17.43 -0.09 -0.31 16 18 N -0.92 -27.16 9.46 55.49 0.52 -26.64 16 19 Si 0.90 22.14 29.56 -169.99 -5.02 17.11 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 23 N -0.20 -2.99 9.32 32.85 0.31 -2.69 16 24 N -0.07 -0.95 13.67 60.35 0.82 -0.12 16 25 N -0.36 -3.71 3.28 -50.41 -0.17 -3.88 16 26 C 0.14 0.87 3.68 -67.93 -0.25 0.62 16 27 C -0.16 -0.84 9.47 37.15 0.35 -0.49 16 28 C -0.16 -0.82 9.47 37.16 0.35 -0.47 16 29 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.07 0.42 7.18 -51.93 -0.37 0.04 16 31 H 0.11 1.30 6.43 -51.93 -0.33 0.97 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.09 1.33 5.87 -51.93 -0.30 1.03 16 34 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.08 1.51 6.57 -51.93 -0.34 1.16 16 37 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 38 H 0.06 1.31 6.32 -51.93 -0.33 0.98 16 39 H 0.04 0.88 7.95 -51.93 -0.41 0.47 16 40 H 0.04 1.07 7.18 -51.93 -0.37 0.69 16 41 H -0.01 -0.16 7.78 -51.93 -0.40 -0.56 16 42 H 0.04 1.26 6.89 -51.93 -0.36 0.90 16 43 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 44 H 0.11 0.42 6.78 -51.93 -0.35 0.07 16 45 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 46 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 47 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 49 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 50 H 0.07 0.47 8.14 -51.92 -0.42 0.05 16 LS Contribution 391.73 15.07 5.90 5.90 Total: -1.00 -33.08 391.73 -7.43 -40.51 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -8.15 Total: -2.00 kcal Atomic # 6 Polarization: 10.08 SS G_CDS: -0.69 Total: 9.39 kcal Atomic # 7 Polarization: -61.03 SS G_CDS: 0.46 Total: -60.56 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: 0.07 Total: -10.35 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.08 -7.43 -40.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485073718.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.910 kcal (2) G-P(sol) polarization free energy of solvation -33.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds