Wall clock time and date at job start Tue Mar 31 2020 19:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30840 * 126.46678 * 2 1 4 4 N 1.28909 * 109.73917 * 180.02562 * 3 2 1 5 5 C 1.29838 * 109.47765 * 0.04114 * 4 3 2 6 6 N 1.34688 * 126.46361 * 180.02562 * 2 1 3 7 7 C 1.46263 * 128.84861 * 359.82220 * 6 2 1 8 8 C 1.53316 * 108.73100 * 197.12330 * 7 6 2 9 9 H 1.09000 * 109.45457 * 69.71274 * 8 7 6 10 10 C 1.50702 * 109.45161 * 189.66571 * 8 7 6 11 11 O 1.21278 * 119.99943 * 359.97438 * 10 8 7 12 12 N 1.34773 * 119.99985 * 179.97438 * 10 8 7 13 13 C 1.46494 * 120.00027 * 180.02562 * 12 10 8 14 14 H 1.09002 * 109.47201 * 324.99620 * 13 12 10 15 15 C 1.53003 * 109.47636 * 84.99927 * 13 12 10 16 16 C 1.53001 * 109.47227 * 205.00066 * 13 12 10 17 17 C 1.52995 * 109.47472 * 64.99497 * 16 13 12 18 18 C 1.53001 * 109.47472 * 179.97438 * 17 16 13 19 19 N 1.46501 * 109.47255 * 180.02562 * 18 17 16 20 20 C 1.36935 * 120.00198 * 180.02562 * 19 18 17 21 21 H 1.08000 * 119.99631 * 359.97438 * 20 19 18 22 22 C 1.38810 * 119.99927 * 180.02562 * 20 19 18 23 23 N 1.31619 * 120.00373 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99816 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.47212 * 59.99731 * 24 22 20 26 26 H 1.48499 * 109.47430 * 179.97438 * 24 22 20 27 27 H 1.48503 * 109.47312 * 299.99886 * 24 22 20 28 28 C 1.53142 * 109.58121 * 309.69859 * 8 7 6 29 29 C 1.50802 * 128.52082 * 179.91228 * 5 4 3 30 30 H 1.08999 * 109.46763 * 89.97284 * 1 2 3 31 31 H 1.08991 * 109.47426 * 209.97740 * 1 2 3 32 32 H 1.08998 * 109.46737 * 329.97856 * 1 2 3 33 33 H 1.08998 * 109.59326 * 77.34419 * 7 6 2 34 34 H 1.09008 * 109.59033 * 316.89418 * 7 6 2 35 35 H 0.97006 * 119.99835 * 359.97438 * 12 10 8 36 36 H 1.08993 * 109.47521 * 180.02562 * 15 13 12 37 37 H 1.08997 * 109.46551 * 300.00002 * 15 13 12 38 38 H 1.09002 * 109.47076 * 59.99616 * 15 13 12 39 39 H 1.08997 * 109.47377 * 185.00032 * 16 13 12 40 40 H 1.09007 * 109.46681 * 304.99750 * 16 13 12 41 41 H 1.08997 * 109.47257 * 300.00609 * 17 16 13 42 42 H 1.09007 * 109.46960 * 60.00424 * 17 16 13 43 43 H 1.08997 * 109.47377 * 300.00536 * 18 17 16 44 44 H 1.09003 * 109.46967 * 60.00669 * 18 17 16 45 45 H 0.97000 * 119.99714 * 0.02562 * 19 18 17 46 46 H 0.96999 * 119.99801 * 180.02562 * 23 22 20 47 47 H 1.08992 * 109.49951 * 189.37999 * 28 8 7 48 48 H 1.08998 * 109.49866 * 309.48678 * 28 8 7 49 49 H 1.08993 * 109.73676 * 76.21709 * 29 5 4 50 50 H 1.09001 * 109.72892 * 315.52698 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2847 1.0522 0.0000 4 7 3.5192 0.6812 -0.0005 5 6 3.5815 -0.6157 -0.0018 6 7 2.3075 -1.0832 -0.0005 7 6 1.9367 -2.4980 0.0024 8 6 3.1552 -3.3255 0.4280 9 1 3.3629 -3.1494 1.4835 10 6 2.8688 -4.7890 0.2103 11 8 1.7977 -5.1369 -0.2397 12 7 3.8031 -5.7111 0.5156 13 6 3.5250 -7.1337 0.3034 14 1 2.4727 -7.3325 0.5068 15 6 3.8432 -7.5049 -1.1464 16 6 4.3932 -7.9693 1.2462 17 6 3.9885 -7.6894 2.6948 18 6 4.8563 -8.5255 3.6375 19 7 4.4683 -8.2579 5.0247 20 6 5.1118 -8.8963 6.0510 21 1 5.9051 -9.5975 5.8378 22 6 4.7438 -8.6432 7.3653 23 7 3.7766 -7.7891 7.6250 24 14 5.6211 -9.5147 8.7653 25 1 7.0677 -9.1808 8.7271 26 1 5.0458 -9.0732 10.0612 27 1 5.4479 -10.9825 8.6207 28 6 4.3717 -2.9142 -0.4063 29 6 4.8051 -1.4972 -0.0046 30 1 -0.3633 0.0005 -1.0277 31 1 -0.3634 -0.8901 0.5134 32 1 -0.3633 0.8898 0.5142 33 1 1.6239 -2.7960 -0.9983 34 1 1.1205 -2.6605 0.7065 35 1 4.6599 -5.4328 0.8752 36 1 3.6359 -8.5632 -1.3044 37 1 3.2246 -6.9097 -1.8179 38 1 4.8955 -7.3061 -1.3498 39 1 4.2523 -9.0277 1.0275 40 1 5.4413 -7.7054 1.1043 41 1 4.1295 -6.6309 2.9134 42 1 2.9404 -7.9532 2.8367 43 1 4.7149 -9.5839 3.4188 44 1 5.9045 -8.2620 3.4959 45 1 3.7555 -7.6284 5.2160 46 1 3.5197 -7.6119 8.5434 47 1 5.1903 -3.6101 -0.2235 48 1 4.1095 -2.9298 -1.4641 49 1 5.2483 -1.5149 0.9910 50 1 5.5304 -1.1176 -0.7243 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485750861.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:32 Heat of formation + Delta-G solvation = 28.380666 kcal Electronic energy + Delta-G solvation = -28799.872336 eV Core-core repulsion = 24862.775125 eV Total energy + Delta-G solvation = -3937.097210 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.60897 -40.53775 -37.63258 -36.67335 -34.98450 -34.49345 -32.84688 -32.02119 -31.15379 -30.62210 -29.45109 -27.67818 -25.90369 -25.37102 -23.73186 -23.08061 -21.86660 -21.29735 -20.89491 -20.79188 -19.89316 -17.96534 -17.08146 -16.97473 -16.61414 -16.47712 -15.73074 -15.32363 -14.79039 -14.77012 -14.58892 -14.39437 -14.21764 -14.09614 -13.83882 -13.55113 -13.47095 -13.09421 -13.00052 -12.84069 -12.65114 -12.58026 -12.34408 -12.21360 -11.86182 -11.72947 -11.54671 -11.40548 -11.28810 -10.90301 -10.87547 -10.58802 -10.56435 -10.50896 -10.42734 -10.14217 -10.07837 -9.73945 -9.34289 -9.24249 -8.91055 -6.96911 -5.80592 -3.09659 1.51666 2.03575 2.22325 2.59943 2.82262 3.40813 3.45150 3.46444 3.62915 3.84642 3.98400 4.04089 4.15026 4.46216 4.50847 4.56293 4.61938 4.69251 4.73988 4.83677 4.89689 5.01318 5.04845 5.09735 5.15100 5.22066 5.29670 5.35433 5.41961 5.44773 5.50208 5.51167 5.52463 5.64978 5.67847 5.82234 5.90845 5.93198 5.98622 6.09693 6.26028 6.27323 6.32424 6.54593 6.77883 6.81519 7.15157 7.65015 7.83850 8.38462 8.48527 9.49256 10.07483 10.41549 11.42280 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.011475 B = 0.002283 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2439.533661 B =12261.343076 C =13630.072237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.180 3.820 3 N -0.300 5.300 4 N -0.290 5.290 5 C 0.172 3.828 6 N -0.469 5.469 7 C 0.125 3.875 8 C -0.127 4.127 9 H 0.115 0.885 10 C 0.528 3.472 11 O -0.539 6.539 12 N -0.714 5.714 13 C 0.141 3.859 14 H 0.090 0.910 15 C -0.162 4.162 16 C -0.123 4.123 17 C -0.125 4.125 18 C 0.153 3.847 19 N -0.735 5.735 20 C -0.242 4.242 21 H 0.070 0.930 22 C -0.014 4.014 23 N -0.934 5.934 24 Si 0.908 3.092 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.286 1.286 28 C -0.117 4.117 29 C -0.032 4.032 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.104 0.896 35 H 0.403 0.597 36 H 0.067 0.933 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.080 0.920 40 H 0.068 0.932 41 H 0.060 0.940 42 H 0.062 0.938 43 H 0.017 0.983 44 H 0.016 0.984 45 H 0.383 0.617 46 H 0.256 0.744 47 H 0.093 0.907 48 H 0.079 0.921 49 H 0.101 0.899 50 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.967 9.634 -22.077 24.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.087 4.087 3 N -0.141 5.141 4 N -0.129 5.129 5 C -0.096 4.096 6 N -0.161 5.161 7 C 0.002 3.998 8 C -0.149 4.149 9 H 0.133 0.867 10 C 0.313 3.687 11 O -0.416 6.416 12 N -0.365 5.365 13 C 0.037 3.963 14 H 0.108 0.892 15 C -0.220 4.220 16 C -0.162 4.162 17 C -0.163 4.163 18 C 0.025 3.975 19 N -0.379 5.379 20 C -0.373 4.373 21 H 0.087 0.913 22 C -0.210 4.210 23 N -0.583 5.583 24 Si 0.739 3.261 25 H -0.212 1.212 26 H -0.216 1.216 27 H -0.212 1.212 28 C -0.155 4.155 29 C -0.071 4.071 30 H 0.105 0.895 31 H 0.098 0.902 32 H 0.114 0.886 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.238 0.762 36 H 0.086 0.914 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.099 0.901 40 H 0.087 0.913 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.035 0.965 44 H 0.034 0.966 45 H 0.216 0.784 46 H 0.066 0.934 47 H 0.112 0.888 48 H 0.098 0.902 49 H 0.119 0.881 50 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -2.225 10.700 -22.295 24.830 hybrid contribution 0.220 -1.510 1.202 1.943 sum -2.005 9.190 -21.093 23.095 Atomic orbital electron populations 1.20237 0.83614 1.04727 1.04117 1.24692 0.97152 0.82679 1.04179 1.74496 0.96100 1.23657 1.19856 1.74047 1.12337 1.08022 1.18511 1.24695 0.87030 0.92627 1.05237 1.45989 1.07009 1.08448 1.54629 1.21750 0.97643 0.75311 1.05129 1.21658 0.96382 0.92959 1.03852 0.86672 1.19958 0.84218 0.86946 0.77609 1.90734 1.24162 1.81894 1.44768 1.46062 1.18266 1.06850 1.65333 1.21104 1.01348 0.79038 0.94837 0.89169 1.22169 1.01726 1.02047 0.96092 1.21862 0.99337 1.00246 0.94738 1.21734 1.00698 1.00708 0.93187 1.20645 0.95470 0.96035 0.85346 1.42366 1.43496 1.52391 0.99610 1.19189 1.13395 1.18682 0.86018 0.91252 1.24755 0.99035 0.99908 0.97330 1.69648 1.31613 1.38076 1.18953 0.86258 0.78936 0.79112 0.81817 1.21239 1.21638 1.21232 1.21747 0.96730 0.96650 1.00389 1.20243 0.91249 0.90769 1.04884 0.89525 0.90238 0.88576 0.87970 0.87776 0.76219 0.91392 0.92359 0.92420 0.90122 0.91319 0.92144 0.91952 0.96496 0.96568 0.78375 0.93428 0.88834 0.90203 0.88073 0.87623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.44 10.29 36.01 0.37 -0.07 16 2 C 0.18 1.92 8.07 -155.45 -1.25 0.66 16 3 N -0.30 -4.18 12.23 32.70 0.40 -3.78 16 4 N -0.29 -4.02 12.21 32.76 0.40 -3.62 16 5 C 0.17 1.80 7.75 -155.31 -1.20 0.59 16 6 N -0.47 -4.49 3.11 -110.86 -0.35 -4.83 16 7 C 0.12 0.94 5.48 -4.01 -0.02 0.92 16 8 C -0.13 -0.85 2.53 -91.53 -0.23 -1.09 16 9 H 0.12 0.75 8.12 -51.93 -0.42 0.33 16 10 C 0.53 4.74 7.12 -10.99 -0.08 4.66 16 11 O -0.54 -6.66 15.49 5.56 0.09 -6.58 16 12 N -0.71 -5.69 4.35 -53.81 -0.23 -5.92 16 13 C 0.14 1.29 2.57 -67.93 -0.17 1.12 16 14 H 0.09 1.02 7.58 -51.93 -0.39 0.63 16 15 C -0.16 -1.27 9.48 37.16 0.35 -0.92 16 16 C -0.12 -1.23 4.75 -26.73 -0.13 -1.36 16 17 C -0.13 -1.78 5.22 -26.73 -0.14 -1.92 16 18 C 0.15 2.89 6.26 -4.04 -0.03 2.87 16 19 N -0.73 -18.37 5.60 -59.91 -0.34 -18.71 16 20 C -0.24 -6.73 9.99 -15.06 -0.15 -6.88 16 21 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 22 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 23 N -0.93 -28.16 13.06 55.49 0.72 -27.44 16 24 Si 0.91 22.23 29.55 -169.99 -5.02 17.21 16 25 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 26 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 27 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 28 C -0.12 -0.58 5.23 -26.39 -0.14 -0.72 16 29 C -0.03 -0.20 6.34 -27.56 -0.17 -0.37 16 30 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.08 0.40 7.75 -51.93 -0.40 -0.01 16 32 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.10 0.77 7.80 -51.93 -0.40 0.36 16 34 H 0.10 0.75 7.85 -51.92 -0.41 0.34 16 35 H 0.40 2.45 7.93 -40.82 -0.32 2.12 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.06 0.85 7.75 -51.93 -0.40 0.45 16 42 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.38 10.09 7.67 -40.82 -0.31 9.77 16 46 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 47 H 0.09 0.30 7.31 -51.93 -0.38 -0.08 16 48 H 0.08 0.42 8.12 -51.93 -0.42 0.00 16 49 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 50 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 405.23 15.07 6.11 6.11 Total: -1.00 -36.53 405.23 -9.80 -46.34 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -8.49 Total: 4.25 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: -3.09 Total: -3.02 kcal Atomic # 7 Polarization: -64.92 SS G_CDS: 0.61 Total: -64.31 kcal Atomic # 8 Polarization: -6.66 SS G_CDS: 0.09 Total: -6.58 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -36.53 -9.80 -46.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485750861.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.717 kcal (2) G-P(sol) polarization free energy of solvation -36.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds