Wall clock time and date at job start Tue Mar 31 2020 19:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30840 * 126.46678 * 2 1 4 4 N 1.28909 * 109.73917 * 180.02562 * 3 2 1 5 5 C 1.29838 * 109.47765 * 0.04114 * 4 3 2 6 6 N 1.34688 * 126.46361 * 180.02562 * 2 1 3 7 7 C 1.46263 * 128.84861 * 359.82220 * 6 2 1 8 8 C 1.53316 * 108.73100 * 197.12330 * 7 6 2 9 9 H 1.09000 * 109.45457 * 69.71274 * 8 7 6 10 10 C 1.50702 * 109.45161 * 189.66571 * 8 7 6 11 11 O 1.21278 * 119.99943 * 359.97438 * 10 8 7 12 12 N 1.34773 * 119.99985 * 179.97438 * 10 8 7 13 13 C 1.46494 * 120.00027 * 180.02562 * 12 10 8 14 14 H 1.09002 * 109.47201 * 324.99620 * 13 12 10 15 15 C 1.53003 * 109.47636 * 84.99927 * 13 12 10 16 16 C 1.53001 * 109.47227 * 205.00066 * 13 12 10 17 17 C 1.52995 * 109.47472 * 64.99497 * 16 13 12 18 18 C 1.53001 * 109.47472 * 179.97438 * 17 16 13 19 19 N 1.46501 * 109.47255 * 180.02562 * 18 17 16 20 20 C 1.36935 * 120.00198 * 180.02562 * 19 18 17 21 21 H 1.08000 * 119.99631 * 359.97438 * 20 19 18 22 22 C 1.38810 * 119.99927 * 180.02562 * 20 19 18 23 23 N 1.31619 * 120.00373 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99816 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.47212 * 59.99731 * 24 22 20 26 26 H 1.48499 * 109.47430 * 179.97438 * 24 22 20 27 27 H 1.48503 * 109.47312 * 299.99886 * 24 22 20 28 28 C 1.53142 * 109.58121 * 309.69859 * 8 7 6 29 29 C 1.50802 * 128.52082 * 179.91228 * 5 4 3 30 30 H 1.08999 * 109.46763 * 89.97284 * 1 2 3 31 31 H 1.08991 * 109.47426 * 209.97740 * 1 2 3 32 32 H 1.08998 * 109.46737 * 329.97856 * 1 2 3 33 33 H 1.08998 * 109.59326 * 77.34419 * 7 6 2 34 34 H 1.09008 * 109.59033 * 316.89418 * 7 6 2 35 35 H 0.97006 * 119.99835 * 359.97438 * 12 10 8 36 36 H 1.08993 * 109.47521 * 180.02562 * 15 13 12 37 37 H 1.08997 * 109.46551 * 300.00002 * 15 13 12 38 38 H 1.09002 * 109.47076 * 59.99616 * 15 13 12 39 39 H 1.08997 * 109.47377 * 185.00032 * 16 13 12 40 40 H 1.09007 * 109.46681 * 304.99750 * 16 13 12 41 41 H 1.08997 * 109.47257 * 300.00609 * 17 16 13 42 42 H 1.09007 * 109.46960 * 60.00424 * 17 16 13 43 43 H 1.08997 * 109.47377 * 300.00536 * 18 17 16 44 44 H 1.09003 * 109.46967 * 60.00669 * 18 17 16 45 45 H 0.97000 * 119.99714 * 0.02562 * 19 18 17 46 46 H 0.96999 * 119.99801 * 180.02562 * 23 22 20 47 47 H 1.08992 * 109.49951 * 189.37999 * 28 8 7 48 48 H 1.08998 * 109.49866 * 309.48678 * 28 8 7 49 49 H 1.08993 * 109.73676 * 76.21709 * 29 5 4 50 50 H 1.09001 * 109.72892 * 315.52698 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2847 1.0522 0.0000 4 7 3.5192 0.6812 -0.0005 5 6 3.5815 -0.6157 -0.0018 6 7 2.3075 -1.0832 -0.0005 7 6 1.9367 -2.4980 0.0024 8 6 3.1552 -3.3255 0.4280 9 1 3.3629 -3.1494 1.4835 10 6 2.8688 -4.7890 0.2103 11 8 1.7977 -5.1369 -0.2397 12 7 3.8031 -5.7111 0.5156 13 6 3.5250 -7.1337 0.3034 14 1 2.4727 -7.3325 0.5068 15 6 3.8432 -7.5049 -1.1464 16 6 4.3932 -7.9693 1.2462 17 6 3.9885 -7.6894 2.6948 18 6 4.8563 -8.5255 3.6375 19 7 4.4683 -8.2579 5.0247 20 6 5.1118 -8.8963 6.0510 21 1 5.9051 -9.5975 5.8378 22 6 4.7438 -8.6432 7.3653 23 7 3.7766 -7.7891 7.6250 24 14 5.6211 -9.5147 8.7653 25 1 7.0677 -9.1808 8.7271 26 1 5.0458 -9.0732 10.0612 27 1 5.4479 -10.9825 8.6207 28 6 4.3717 -2.9142 -0.4063 29 6 4.8051 -1.4972 -0.0046 30 1 -0.3633 0.0005 -1.0277 31 1 -0.3634 -0.8901 0.5134 32 1 -0.3633 0.8898 0.5142 33 1 1.6239 -2.7960 -0.9983 34 1 1.1205 -2.6605 0.7065 35 1 4.6599 -5.4328 0.8752 36 1 3.6359 -8.5632 -1.3044 37 1 3.2246 -6.9097 -1.8179 38 1 4.8955 -7.3061 -1.3498 39 1 4.2523 -9.0277 1.0275 40 1 5.4413 -7.7054 1.1043 41 1 4.1295 -6.6309 2.9134 42 1 2.9404 -7.9532 2.8367 43 1 4.7149 -9.5839 3.4188 44 1 5.9045 -8.2620 3.4959 45 1 3.7555 -7.6284 5.2160 46 1 3.5197 -7.6119 8.5434 47 1 5.1903 -3.6101 -0.2235 48 1 4.1095 -2.9298 -1.4641 49 1 5.2483 -1.5149 0.9910 50 1 5.5304 -1.1176 -0.7243 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485750861.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:30 Heat of formation + Delta-G solvation = 4.685263 kcal Electronic energy + Delta-G solvation = -28800.899846 eV Core-core repulsion = 24862.775125 eV Total energy + Delta-G solvation = -3938.124720 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -44.39078 -41.25796 -38.40372 -37.57679 -36.50268 -35.20234 -34.18473 -33.06273 -32.10034 -31.41965 -30.66264 -28.36001 -27.23090 -26.17495 -24.76860 -24.29074 -22.68227 -22.35197 -21.97927 -21.53352 -20.53051 -19.12830 -18.64825 -17.69145 -17.36322 -17.23358 -16.63649 -16.42410 -15.96649 -15.81940 -15.40859 -15.31784 -15.13587 -15.04791 -14.87590 -14.76097 -14.37021 -13.97907 -13.80699 -13.50051 -13.42046 -13.26522 -13.19341 -13.12933 -12.98720 -12.74046 -12.63262 -12.37621 -12.28097 -12.24414 -12.09206 -12.05613 -11.84335 -11.69251 -11.47185 -11.39746 -11.17421 -10.92140 -10.87774 -10.07973 -10.05163 -9.00319 -7.96288 -5.25104 0.77280 1.34557 1.47075 1.49905 1.53457 1.56177 1.75011 2.16176 2.55646 3.04545 3.24556 3.37680 3.38274 3.52136 3.55738 3.67127 3.91529 3.99813 4.01493 4.12942 4.14188 4.23206 4.29461 4.31826 4.44829 4.53771 4.61085 4.61327 4.63179 4.71487 4.81735 4.83276 4.85785 4.89955 4.94222 4.95581 4.99365 5.02727 5.04417 5.15994 5.21027 5.35658 5.39484 5.44975 5.51601 5.58910 5.85838 6.26544 6.50989 7.18392 7.32349 7.65098 8.10398 8.31478 9.27187 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.011475 B = 0.002283 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2439.533661 B =12261.343076 C =13630.072237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.178 3.822 3 N -0.347 5.347 4 N -0.337 5.337 5 C 0.173 3.827 6 N -0.469 5.469 7 C 0.125 3.875 8 C -0.119 4.119 9 H 0.121 0.879 10 C 0.530 3.470 11 O -0.575 6.575 12 N -0.706 5.706 13 C 0.145 3.855 14 H 0.065 0.935 15 C -0.155 4.155 16 C -0.110 4.110 17 C -0.112 4.112 18 C 0.148 3.852 19 N -0.751 5.751 20 C -0.247 4.247 21 H 0.077 0.923 22 C -0.078 4.078 23 N -0.971 5.971 24 Si 0.974 3.026 25 H -0.276 1.276 26 H -0.296 1.296 27 H -0.278 1.278 28 C -0.107 4.107 29 C -0.030 4.030 30 H 0.102 0.898 31 H 0.095 0.905 32 H 0.099 0.901 33 H 0.103 0.897 34 H 0.106 0.894 35 H 0.415 0.585 36 H 0.073 0.927 37 H 0.046 0.954 38 H 0.074 0.926 39 H 0.087 0.913 40 H 0.090 0.910 41 H 0.061 0.939 42 H 0.044 0.956 43 H 0.017 0.983 44 H 0.026 0.974 45 H 0.372 0.628 46 H 0.251 0.749 47 H 0.120 0.880 48 H 0.079 0.921 49 H 0.114 0.886 50 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.398 8.289 -23.025 24.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.090 4.090 3 N -0.187 5.187 4 N -0.175 5.175 5 C -0.096 4.096 6 N -0.160 5.160 7 C 0.002 3.998 8 C -0.141 4.141 9 H 0.139 0.861 10 C 0.316 3.684 11 O -0.455 6.455 12 N -0.358 5.358 13 C 0.041 3.959 14 H 0.084 0.916 15 C -0.213 4.213 16 C -0.149 4.149 17 C -0.150 4.150 18 C 0.022 3.978 19 N -0.393 5.393 20 C -0.379 4.379 21 H 0.095 0.905 22 C -0.270 4.270 23 N -0.622 5.622 24 Si 0.802 3.198 25 H -0.201 1.201 26 H -0.223 1.223 27 H -0.204 1.204 28 C -0.146 4.146 29 C -0.069 4.069 30 H 0.120 0.880 31 H 0.114 0.886 32 H 0.118 0.882 33 H 0.121 0.879 34 H 0.125 0.875 35 H 0.252 0.748 36 H 0.092 0.908 37 H 0.065 0.935 38 H 0.093 0.907 39 H 0.105 0.895 40 H 0.109 0.891 41 H 0.080 0.920 42 H 0.063 0.937 43 H 0.035 0.965 44 H 0.044 0.956 45 H 0.203 0.797 46 H 0.060 0.940 47 H 0.139 0.861 48 H 0.098 0.902 49 H 0.132 0.868 50 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -0.605 9.339 -23.280 25.091 hybrid contribution -0.282 -1.140 1.442 1.859 sum -0.886 8.199 -21.839 23.344 Atomic orbital electron populations 1.20421 0.81065 1.05698 1.05394 1.25377 0.98602 0.82402 1.02634 1.74386 0.96734 1.25540 1.22058 1.73934 1.12784 1.10041 1.20781 1.25443 0.88518 0.92281 1.03318 1.46123 1.06714 1.08929 1.54277 1.21841 0.98283 0.74312 1.05344 1.21606 0.96763 0.91174 1.04534 0.86089 1.20235 0.83645 0.87746 0.76794 1.90726 1.25699 1.82551 1.46535 1.46001 1.18653 1.06327 1.64838 1.20957 0.99787 0.79526 0.95657 0.91632 1.22092 1.02553 1.02235 0.94393 1.21761 1.00557 1.00917 0.91630 1.21594 0.98741 0.99798 0.94899 1.20882 0.96742 0.96830 0.83329 1.42647 1.43075 1.51941 1.01642 1.19631 1.13075 1.18158 0.86997 0.90541 1.25595 1.00245 1.01221 0.99934 1.69808 1.33463 1.39985 1.18947 0.85212 0.78087 0.78188 0.78296 1.20146 1.22270 1.20376 1.21747 0.96621 0.96286 0.99905 1.20468 0.89806 0.90556 1.06097 0.87989 0.88629 0.88181 0.87880 0.87531 0.74766 0.90771 0.93479 0.90653 0.89455 0.89135 0.92009 0.93683 0.96504 0.95555 0.79683 0.94029 0.86126 0.90212 0.86810 0.86294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.82 10.29 71.24 0.73 -0.09 16 2 C 0.18 3.81 8.07 138.14 1.11 4.92 16 3 N -0.35 -10.00 12.23 -50.46 -0.62 -10.62 16 4 N -0.34 -9.58 12.21 -50.28 -0.61 -10.19 16 5 C 0.17 3.54 7.75 138.14 1.07 4.61 16 6 N -0.47 -8.73 3.11 -504.64 -1.57 -10.30 16 7 C 0.12 1.76 5.48 86.53 0.47 2.23 16 8 C -0.12 -1.38 2.53 -11.39 -0.03 -1.41 16 9 H 0.12 1.32 8.12 -2.39 -0.02 1.30 16 10 C 0.53 8.61 7.12 87.66 0.62 9.23 16 11 O -0.58 -13.79 15.49 -3.02 -0.05 -13.84 16 12 N -0.71 -9.51 4.35 -442.54 -1.93 -11.44 16 13 C 0.15 2.35 2.57 44.99 0.12 2.46 16 14 H 0.07 1.43 7.58 -2.39 -0.02 1.41 16 15 C -0.15 -2.01 9.48 71.98 0.68 -1.32 16 16 C -0.11 -1.89 4.75 30.59 0.15 -1.74 16 17 C -0.11 -3.01 5.22 30.59 0.16 -2.85 16 18 C 0.15 5.39 6.26 86.38 0.54 5.93 16 19 N -0.75 -37.26 5.60 -343.45 -1.92 -39.18 16 20 C -0.25 -13.59 9.99 84.03 0.84 -12.75 16 21 H 0.08 4.01 7.83 -2.91 -0.02 3.98 16 22 C -0.08 -4.43 5.50 84.86 0.47 -3.97 16 23 N -0.97 -59.14 13.06 21.65 0.28 -58.86 16 24 Si 0.97 45.44 29.55 68.60 2.03 47.47 16 25 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 26 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 27 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 28 C -0.11 -0.78 5.23 30.82 0.16 -0.62 16 29 C -0.03 -0.32 6.34 30.06 0.19 -0.13 16 30 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.10 0.85 7.75 -2.39 -0.02 0.83 16 32 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.10 1.46 7.80 -2.39 -0.02 1.44 16 34 H 0.11 1.45 7.85 -2.38 -0.02 1.43 16 35 H 0.42 3.59 7.93 -92.70 -0.74 2.85 16 36 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 41 H 0.06 1.64 7.75 -2.39 -0.02 1.62 16 42 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16 43 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 44 H 0.03 0.92 8.14 -2.39 -0.02 0.91 16 45 H 0.37 19.77 7.67 -92.71 -0.71 19.06 16 46 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 47 H 0.12 0.27 7.31 -2.39 -0.02 0.25 16 48 H 0.08 0.64 8.12 -2.39 -0.02 0.62 16 49 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 50 H 0.12 0.97 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -80.89 405.23 2.40 -78.50 By element: Atomic # 1 Polarization: 24.45 SS G_CDS: -0.50 Total: 23.95 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: 7.29 Total: 4.51 kcal Atomic # 7 Polarization: -134.22 SS G_CDS: -6.37 Total: -140.59 kcal Atomic # 8 Polarization: -13.79 SS G_CDS: -0.05 Total: -13.84 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -80.89 2.40 -78.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485750861.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.182 kcal (2) G-P(sol) polarization free energy of solvation -80.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds