Wall clock time and date at job start Tue Mar 31 2020 19:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30835 * 126.46776 * 2 1 4 4 N 1.28911 * 109.74238 * 180.02562 * 3 2 1 5 5 C 1.29840 * 109.47562 * 359.97255 * 4 3 2 6 6 N 1.34695 * 126.46127 * 180.02562 * 2 1 3 7 7 C 1.46257 * 128.84605 * 0.07262 * 6 2 1 8 8 C 1.53324 * 108.72762 * 162.93274 * 7 6 2 9 9 H 1.09004 * 109.45085 * 290.26387 * 8 7 6 10 10 C 1.50699 * 109.44777 * 170.31440 * 8 7 6 11 11 O 1.21277 * 120.00311 * 359.95455 * 10 8 7 12 12 N 1.34781 * 119.99755 * 179.97438 * 10 8 7 13 13 C 1.46502 * 120.00059 * 180.02562 * 12 10 8 14 14 H 1.08997 * 109.46984 * 34.99747 * 13 12 10 15 15 C 1.53002 * 109.46680 * 274.99983 * 13 12 10 16 16 C 1.52996 * 109.47041 * 154.99948 * 13 12 10 17 17 C 1.52997 * 109.47131 * 294.99476 * 16 13 12 18 18 C 1.53006 * 109.47127 * 180.02562 * 17 16 13 19 19 N 1.46496 * 109.46995 * 180.02562 * 18 17 16 20 20 C 1.36937 * 119.99946 * 180.02562 * 19 18 17 21 21 H 1.08005 * 120.00046 * 0.02562 * 20 19 18 22 22 C 1.38814 * 120.00249 * 179.97438 * 20 19 18 23 23 N 1.31618 * 119.99665 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00093 * 180.02562 * 22 20 19 25 25 H 1.48493 * 109.47290 * 60.00009 * 24 22 20 26 26 H 1.48496 * 109.47109 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47327 * 300.00253 * 24 22 20 28 28 C 1.53136 * 109.56630 * 50.29106 * 8 7 6 29 29 C 1.50799 * 128.51869 * 180.14818 * 5 4 3 30 30 H 1.08999 * 109.47552 * 269.96662 * 1 2 3 31 31 H 1.09004 * 109.46876 * 29.96434 * 1 2 3 32 32 H 1.08999 * 109.47136 * 149.96018 * 1 2 3 33 33 H 1.09003 * 109.59218 * 43.16434 * 7 6 2 34 34 H 1.08994 * 109.59621 * 282.70479 * 7 6 2 35 35 H 0.96999 * 120.00010 * 359.97438 * 12 10 8 36 36 H 1.09010 * 109.47120 * 299.99962 * 15 13 12 37 37 H 1.08992 * 109.47133 * 59.99601 * 15 13 12 38 38 H 1.08998 * 109.47095 * 180.02562 * 15 13 12 39 39 H 1.09001 * 109.46993 * 174.99345 * 16 13 12 40 40 H 1.09004 * 109.47298 * 54.99759 * 16 13 12 41 41 H 1.09001 * 109.46832 * 60.00325 * 17 16 13 42 42 H 1.08993 * 109.47194 * 299.99846 * 17 16 13 43 43 H 1.09001 * 109.46801 * 300.00272 * 18 17 16 44 44 H 1.09001 * 109.46998 * 59.99868 * 18 17 16 45 45 H 0.96998 * 120.00192 * 359.97438 * 19 18 17 46 46 H 0.97001 * 119.99952 * 180.02562 * 23 22 20 47 47 H 1.09005 * 109.50087 * 50.50907 * 28 8 7 48 48 H 1.09007 * 109.49949 * 170.60673 * 28 8 7 49 49 H 1.08997 * 109.73542 * 283.69569 * 29 5 4 50 50 H 1.09004 * 109.72934 * 44.33330 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2846 1.0522 0.0000 4 7 3.5192 0.6812 -0.0005 5 6 3.5815 -0.6157 -0.0003 6 7 2.3075 -1.0833 -0.0005 7 6 1.9365 -2.4980 -0.0026 8 6 3.1548 -3.3258 -0.4285 9 1 3.3617 -3.1504 -1.4843 10 6 2.8687 -4.7891 -0.2095 11 8 1.7984 -5.1366 0.2428 12 7 3.8024 -5.7115 -0.5158 13 6 3.5241 -7.1341 -0.3034 14 1 2.4716 -7.3325 -0.5057 15 6 3.8437 -7.5053 1.1461 16 6 4.3912 -7.9698 -1.2471 17 6 3.9849 -7.6898 -2.6953 18 6 4.8516 -8.5260 -3.6390 19 7 4.4629 -8.2574 -5.0256 20 6 5.1047 -8.8966 -6.0527 21 1 5.8971 -9.5991 -5.8403 22 6 4.7361 -8.6425 -7.3666 23 7 3.7701 -7.7869 -7.6254 24 14 5.6111 -9.5150 -8.7675 25 1 5.4358 -10.9825 -8.6231 26 1 5.0355 -9.0723 -10.0628 27 1 7.0581 -9.1835 -8.7303 28 6 4.3716 -2.9137 0.4050 29 6 4.8051 -1.4972 0.0023 30 1 -0.3634 -0.0006 1.0276 31 1 -0.3633 0.8903 -0.5133 32 1 -0.3633 -0.8896 -0.5144 33 1 1.1200 -2.6608 -0.7061 34 1 1.6243 -2.7956 0.9984 35 1 4.6584 -5.4335 -0.8776 36 1 4.8963 -7.3068 1.3484 37 1 3.2260 -6.9099 1.8183 38 1 3.6371 -8.5638 1.3040 39 1 4.2502 -9.0283 -1.0283 40 1 5.4395 -7.7062 -1.1063 41 1 4.1259 -6.6313 -2.9140 42 1 2.9367 -7.9534 -2.8360 43 1 5.9000 -8.2628 -3.4983 44 1 4.7102 -9.5844 -3.4200 45 1 3.7505 -7.6274 -5.2163 46 1 3.5122 -7.6096 -8.5435 47 1 4.1098 -2.9286 1.4630 48 1 5.1903 -3.6099 0.2224 49 1 5.2478 -1.5153 -0.9936 50 1 5.5311 -1.1167 0.7208 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485750862.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:36 Heat of formation + Delta-G solvation = 28.358644 kcal Electronic energy + Delta-G solvation = -28800.110110 eV Core-core repulsion = 24863.011944 eV Total energy + Delta-G solvation = -3937.098165 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.60822 -40.53729 -37.63275 -36.67353 -34.98427 -34.49320 -32.84640 -32.02091 -31.15381 -30.62203 -29.45104 -27.67761 -25.90325 -25.37085 -23.73137 -23.08043 -21.86628 -21.29687 -20.89542 -20.79155 -19.89301 -17.96483 -17.08151 -16.97500 -16.61406 -16.47657 -15.73011 -15.32357 -14.79053 -14.77009 -14.58856 -14.39437 -14.21724 -14.09634 -13.83859 -13.55132 -13.47055 -13.09424 -13.00042 -12.84085 -12.65108 -12.57988 -12.34370 -12.21341 -11.86155 -11.72900 -11.54611 -11.40568 -11.28816 -10.90326 -10.87586 -10.58785 -10.56428 -10.50964 -10.42696 -10.14222 -10.07827 -9.73930 -9.34282 -9.24230 -8.91050 -6.96923 -5.80619 -3.09665 1.51674 2.03590 2.22332 2.59965 2.82257 3.40814 3.45155 3.46445 3.62901 3.84717 3.98448 4.04136 4.15091 4.46245 4.50851 4.56328 4.61946 4.69263 4.73983 4.83704 4.89702 5.01304 5.04857 5.09753 5.15106 5.22064 5.29634 5.35447 5.42018 5.44790 5.50275 5.51217 5.52433 5.64944 5.67839 5.82235 5.90867 5.93235 5.98612 6.09660 6.26012 6.27333 6.32399 6.54626 6.77862 6.81501 7.15189 7.65000 7.83856 8.38451 8.48541 9.49226 10.07479 10.41532 11.42264 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.011471 B = 0.002284 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2440.419054 B =12258.550116 C =13628.562705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.180 3.820 3 N -0.300 5.300 4 N -0.290 5.290 5 C 0.172 3.828 6 N -0.469 5.469 7 C 0.125 3.875 8 C -0.127 4.127 9 H 0.115 0.885 10 C 0.528 3.472 11 O -0.539 6.539 12 N -0.714 5.714 13 C 0.141 3.859 14 H 0.090 0.910 15 C -0.162 4.162 16 C -0.123 4.123 17 C -0.125 4.125 18 C 0.153 3.847 19 N -0.735 5.735 20 C -0.242 4.242 21 H 0.069 0.931 22 C -0.014 4.014 23 N -0.934 5.934 24 Si 0.908 3.092 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.286 1.286 28 C -0.117 4.117 29 C -0.032 4.032 30 H 0.086 0.914 31 H 0.096 0.904 32 H 0.079 0.921 33 H 0.104 0.896 34 H 0.102 0.898 35 H 0.403 0.597 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.067 0.933 39 H 0.080 0.920 40 H 0.068 0.932 41 H 0.060 0.940 42 H 0.062 0.938 43 H 0.016 0.984 44 H 0.017 0.983 45 H 0.383 0.617 46 H 0.256 0.744 47 H 0.079 0.921 48 H 0.093 0.907 49 H 0.101 0.899 50 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.951 9.626 22.068 24.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.087 4.087 3 N -0.141 5.141 4 N -0.129 5.129 5 C -0.096 4.096 6 N -0.161 5.161 7 C 0.002 3.998 8 C -0.148 4.148 9 H 0.133 0.867 10 C 0.313 3.687 11 O -0.416 6.416 12 N -0.365 5.365 13 C 0.037 3.963 14 H 0.108 0.892 15 C -0.220 4.220 16 C -0.162 4.162 17 C -0.163 4.163 18 C 0.025 3.975 19 N -0.379 5.379 20 C -0.373 4.373 21 H 0.087 0.913 22 C -0.210 4.210 23 N -0.583 5.583 24 Si 0.739 3.261 25 H -0.212 1.212 26 H -0.216 1.216 27 H -0.212 1.212 28 C -0.155 4.155 29 C -0.071 4.071 30 H 0.105 0.895 31 H 0.114 0.886 32 H 0.098 0.902 33 H 0.122 0.878 34 H 0.120 0.880 35 H 0.238 0.762 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.086 0.914 39 H 0.099 0.901 40 H 0.087 0.913 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.034 0.966 44 H 0.035 0.965 45 H 0.216 0.784 46 H 0.066 0.934 47 H 0.098 0.902 48 H 0.112 0.888 49 H 0.119 0.881 50 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -2.207 10.693 22.289 24.820 hybrid contribution 0.217 -1.511 -1.205 1.945 sum -1.990 9.182 21.084 23.083 Atomic orbital electron populations 1.20238 0.83616 1.04729 1.04116 1.24691 0.97152 0.82677 1.04179 1.74493 0.96102 1.23660 1.19853 1.74049 1.12334 1.08021 1.18514 1.24696 0.87032 0.92627 1.05231 1.45990 1.07008 1.08446 1.54635 1.21750 0.97645 0.75312 1.05127 1.21658 0.96382 0.92956 1.03851 0.86670 1.19959 0.84201 0.86944 0.77626 1.90734 1.24204 1.81902 1.44716 1.46066 1.18349 1.06851 1.65254 1.21104 1.01345 0.79037 0.94837 0.89172 1.22169 1.01726 1.02041 0.96094 1.21862 0.99345 1.00247 0.94733 1.21734 1.00697 1.00708 0.93189 1.20645 0.95474 0.96030 0.85345 1.42365 1.43583 1.52300 0.99614 1.19192 1.13482 1.18602 0.86011 0.91253 1.24757 0.99048 0.99895 0.97333 1.69648 1.31653 1.37999 1.18987 0.86254 0.78927 0.79111 0.81819 1.21235 1.21639 1.21239 1.21745 0.96728 0.96649 1.00392 1.20241 0.91246 0.90772 1.04887 0.89524 0.88576 0.90237 0.87780 0.87969 0.76220 0.92427 0.92352 0.91394 0.90121 0.91316 0.92144 0.91952 0.96571 0.96495 0.78374 0.93429 0.90203 0.88835 0.88076 0.87621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.44 10.29 36.01 0.37 -0.07 16 2 C 0.18 1.92 8.07 -155.45 -1.25 0.66 16 3 N -0.30 -4.18 12.23 32.70 0.40 -3.78 16 4 N -0.29 -4.02 12.21 32.76 0.40 -3.62 16 5 C 0.17 1.80 7.75 -155.30 -1.20 0.59 16 6 N -0.47 -4.49 3.11 -110.86 -0.35 -4.83 16 7 C 0.12 0.94 5.48 -4.01 -0.02 0.92 16 8 C -0.13 -0.85 2.54 -91.53 -0.23 -1.09 16 9 H 0.12 0.75 8.12 -51.93 -0.42 0.33 16 10 C 0.53 4.74 7.12 -10.98 -0.08 4.66 16 11 O -0.54 -6.66 15.49 5.56 0.09 -6.58 16 12 N -0.71 -5.69 4.35 -53.81 -0.23 -5.93 16 13 C 0.14 1.29 2.57 -67.93 -0.17 1.12 16 14 H 0.09 1.02 7.58 -51.93 -0.39 0.63 16 15 C -0.16 -1.27 9.48 37.16 0.35 -0.92 16 16 C -0.12 -1.23 4.75 -26.73 -0.13 -1.36 16 17 C -0.13 -1.78 5.22 -26.73 -0.14 -1.92 16 18 C 0.15 2.89 6.26 -4.04 -0.03 2.87 16 19 N -0.73 -18.37 5.60 -59.91 -0.34 -18.71 16 20 C -0.24 -6.73 9.99 -15.06 -0.15 -6.88 16 21 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 22 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 23 N -0.93 -28.16 13.06 55.49 0.72 -27.44 16 24 Si 0.91 22.23 29.55 -169.99 -5.02 17.21 16 25 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 26 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 27 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 28 C -0.12 -0.58 5.23 -26.39 -0.14 -0.72 16 29 C -0.03 -0.20 6.34 -27.57 -0.17 -0.38 16 30 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.40 7.76 -51.93 -0.40 0.00 16 33 H 0.10 0.75 7.85 -51.93 -0.41 0.34 16 34 H 0.10 0.77 7.79 -51.93 -0.40 0.37 16 35 H 0.40 2.45 7.94 -40.82 -0.32 2.13 16 36 H 0.06 0.39 8.14 -51.92 -0.42 -0.03 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.06 0.85 7.75 -51.93 -0.40 0.45 16 42 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 44 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.38 10.09 7.67 -40.82 -0.31 9.77 16 46 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 47 H 0.08 0.43 8.12 -51.93 -0.42 0.00 16 48 H 0.09 0.30 7.32 -51.93 -0.38 -0.08 16 49 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 50 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 405.23 15.07 6.11 6.11 Total: -1.00 -36.53 405.23 -9.80 -46.33 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -8.49 Total: 4.26 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: -3.09 Total: -3.02 kcal Atomic # 7 Polarization: -64.92 SS G_CDS: 0.61 Total: -64.31 kcal Atomic # 8 Polarization: -6.66 SS G_CDS: 0.09 Total: -6.58 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -36.53 -9.80 -46.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485750862.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.691 kcal (2) G-P(sol) polarization free energy of solvation -36.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds