Wall clock time and date at job start Tue Mar 31 2020 19:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30835 * 126.46776 * 2 1 4 4 N 1.28911 * 109.74238 * 180.02562 * 3 2 1 5 5 C 1.29840 * 109.47562 * 359.97255 * 4 3 2 6 6 N 1.34695 * 126.46127 * 180.02562 * 2 1 3 7 7 C 1.46257 * 128.84605 * 0.07262 * 6 2 1 8 8 C 1.53324 * 108.72762 * 162.93274 * 7 6 2 9 9 H 1.09004 * 109.45085 * 290.26387 * 8 7 6 10 10 C 1.50699 * 109.44777 * 170.31440 * 8 7 6 11 11 O 1.21277 * 120.00311 * 359.95455 * 10 8 7 12 12 N 1.34781 * 119.99755 * 179.97438 * 10 8 7 13 13 C 1.46502 * 120.00059 * 180.02562 * 12 10 8 14 14 H 1.08997 * 109.46984 * 34.99747 * 13 12 10 15 15 C 1.53002 * 109.46680 * 274.99983 * 13 12 10 16 16 C 1.52996 * 109.47041 * 154.99948 * 13 12 10 17 17 C 1.52997 * 109.47131 * 294.99476 * 16 13 12 18 18 C 1.53006 * 109.47127 * 180.02562 * 17 16 13 19 19 N 1.46496 * 109.46995 * 180.02562 * 18 17 16 20 20 C 1.36937 * 119.99946 * 180.02562 * 19 18 17 21 21 H 1.08005 * 120.00046 * 0.02562 * 20 19 18 22 22 C 1.38814 * 120.00249 * 179.97438 * 20 19 18 23 23 N 1.31618 * 119.99665 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00093 * 180.02562 * 22 20 19 25 25 H 1.48493 * 109.47290 * 60.00009 * 24 22 20 26 26 H 1.48496 * 109.47109 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47327 * 300.00253 * 24 22 20 28 28 C 1.53136 * 109.56630 * 50.29106 * 8 7 6 29 29 C 1.50799 * 128.51869 * 180.14818 * 5 4 3 30 30 H 1.08999 * 109.47552 * 269.96662 * 1 2 3 31 31 H 1.09004 * 109.46876 * 29.96434 * 1 2 3 32 32 H 1.08999 * 109.47136 * 149.96018 * 1 2 3 33 33 H 1.09003 * 109.59218 * 43.16434 * 7 6 2 34 34 H 1.08994 * 109.59621 * 282.70479 * 7 6 2 35 35 H 0.96999 * 120.00010 * 359.97438 * 12 10 8 36 36 H 1.09010 * 109.47120 * 299.99962 * 15 13 12 37 37 H 1.08992 * 109.47133 * 59.99601 * 15 13 12 38 38 H 1.08998 * 109.47095 * 180.02562 * 15 13 12 39 39 H 1.09001 * 109.46993 * 174.99345 * 16 13 12 40 40 H 1.09004 * 109.47298 * 54.99759 * 16 13 12 41 41 H 1.09001 * 109.46832 * 60.00325 * 17 16 13 42 42 H 1.08993 * 109.47194 * 299.99846 * 17 16 13 43 43 H 1.09001 * 109.46801 * 300.00272 * 18 17 16 44 44 H 1.09001 * 109.46998 * 59.99868 * 18 17 16 45 45 H 0.96998 * 120.00192 * 359.97438 * 19 18 17 46 46 H 0.97001 * 119.99952 * 180.02562 * 23 22 20 47 47 H 1.09005 * 109.50087 * 50.50907 * 28 8 7 48 48 H 1.09007 * 109.49949 * 170.60673 * 28 8 7 49 49 H 1.08997 * 109.73542 * 283.69569 * 29 5 4 50 50 H 1.09004 * 109.72934 * 44.33330 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2846 1.0522 0.0000 4 7 3.5192 0.6812 -0.0005 5 6 3.5815 -0.6157 -0.0003 6 7 2.3075 -1.0833 -0.0005 7 6 1.9365 -2.4980 -0.0026 8 6 3.1548 -3.3258 -0.4285 9 1 3.3617 -3.1504 -1.4843 10 6 2.8687 -4.7891 -0.2095 11 8 1.7984 -5.1366 0.2428 12 7 3.8024 -5.7115 -0.5158 13 6 3.5241 -7.1341 -0.3034 14 1 2.4716 -7.3325 -0.5057 15 6 3.8437 -7.5053 1.1461 16 6 4.3912 -7.9698 -1.2471 17 6 3.9849 -7.6898 -2.6953 18 6 4.8516 -8.5260 -3.6390 19 7 4.4629 -8.2574 -5.0256 20 6 5.1047 -8.8966 -6.0527 21 1 5.8971 -9.5991 -5.8403 22 6 4.7361 -8.6425 -7.3666 23 7 3.7701 -7.7869 -7.6254 24 14 5.6111 -9.5150 -8.7675 25 1 5.4358 -10.9825 -8.6231 26 1 5.0355 -9.0723 -10.0628 27 1 7.0581 -9.1835 -8.7303 28 6 4.3716 -2.9137 0.4050 29 6 4.8051 -1.4972 0.0023 30 1 -0.3634 -0.0006 1.0276 31 1 -0.3633 0.8903 -0.5133 32 1 -0.3633 -0.8896 -0.5144 33 1 1.1200 -2.6608 -0.7061 34 1 1.6243 -2.7956 0.9984 35 1 4.6584 -5.4335 -0.8776 36 1 4.8963 -7.3068 1.3484 37 1 3.2260 -6.9099 1.8183 38 1 3.6371 -8.5638 1.3040 39 1 4.2502 -9.0283 -1.0283 40 1 5.4395 -7.7062 -1.1063 41 1 4.1259 -6.6313 -2.9140 42 1 2.9367 -7.9534 -2.8360 43 1 5.9000 -8.2628 -3.4983 44 1 4.7102 -9.5844 -3.4200 45 1 3.7505 -7.6274 -5.2163 46 1 3.5122 -7.6096 -8.5435 47 1 4.1098 -2.9286 1.4630 48 1 5.1903 -3.6099 0.2224 49 1 5.2478 -1.5153 -0.9936 50 1 5.5311 -1.1167 0.7208 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485750862.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:35 Heat of formation + Delta-G solvation = 4.668728 kcal Electronic energy + Delta-G solvation = -28801.137382 eV Core-core repulsion = 24863.011944 eV Total energy + Delta-G solvation = -3938.125437 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -44.39019 -41.25759 -38.40406 -37.57702 -36.50245 -35.20218 -34.18428 -33.06262 -32.10021 -31.41991 -30.66244 -28.35964 -27.23048 -26.17488 -24.76845 -24.29045 -22.68210 -22.35198 -21.97920 -21.53323 -20.53056 -19.12823 -18.64786 -17.69183 -17.36327 -17.23323 -16.63675 -16.42363 -15.96677 -15.81933 -15.40857 -15.31808 -15.13565 -15.04772 -14.87563 -14.76121 -14.37022 -13.97878 -13.80719 -13.50051 -13.42048 -13.26523 -13.19346 -13.12904 -12.98743 -12.74048 -12.63251 -12.37605 -12.28110 -12.24435 -12.09130 -12.05574 -11.84344 -11.69267 -11.47201 -11.39746 -11.17398 -10.92127 -10.87780 -10.07967 -10.05159 -9.00314 -7.96302 -5.25098 0.77270 1.34556 1.47093 1.49920 1.53456 1.56196 1.75017 2.16163 2.55666 3.04517 3.24586 3.37671 3.38299 3.52171 3.55785 3.67150 3.91516 3.99823 4.01502 4.12939 4.14189 4.23186 4.29454 4.31833 4.44818 4.53752 4.61088 4.61325 4.63160 4.71526 4.81746 4.83229 4.85745 4.89963 4.94219 4.95570 4.99368 5.02720 5.04400 5.15989 5.21032 5.35678 5.39457 5.44970 5.51596 5.58903 5.85854 6.26543 6.51003 7.18387 7.32334 7.65095 8.10414 8.31475 9.27182 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.011471 B = 0.002284 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2440.419054 B =12258.550116 C =13628.562705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.178 3.822 3 N -0.347 5.347 4 N -0.337 5.337 5 C 0.173 3.827 6 N -0.470 5.470 7 C 0.125 3.875 8 C -0.119 4.119 9 H 0.121 0.879 10 C 0.530 3.470 11 O -0.575 6.575 12 N -0.706 5.706 13 C 0.145 3.855 14 H 0.065 0.935 15 C -0.155 4.155 16 C -0.110 4.110 17 C -0.112 4.112 18 C 0.148 3.852 19 N -0.751 5.751 20 C -0.247 4.247 21 H 0.077 0.923 22 C -0.078 4.078 23 N -0.971 5.971 24 Si 0.974 3.026 25 H -0.278 1.278 26 H -0.296 1.296 27 H -0.276 1.276 28 C -0.107 4.107 29 C -0.030 4.030 30 H 0.102 0.898 31 H 0.100 0.900 32 H 0.095 0.905 33 H 0.106 0.894 34 H 0.103 0.897 35 H 0.415 0.585 36 H 0.074 0.926 37 H 0.046 0.954 38 H 0.073 0.927 39 H 0.087 0.913 40 H 0.090 0.910 41 H 0.061 0.939 42 H 0.044 0.956 43 H 0.026 0.974 44 H 0.017 0.983 45 H 0.372 0.628 46 H 0.251 0.749 47 H 0.079 0.921 48 H 0.120 0.880 49 H 0.114 0.886 50 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.384 8.279 23.012 24.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.090 4.090 3 N -0.187 5.187 4 N -0.175 5.175 5 C -0.096 4.096 6 N -0.160 5.160 7 C 0.002 3.998 8 C -0.141 4.141 9 H 0.139 0.861 10 C 0.316 3.684 11 O -0.455 6.455 12 N -0.358 5.358 13 C 0.041 3.959 14 H 0.084 0.916 15 C -0.213 4.213 16 C -0.149 4.149 17 C -0.150 4.150 18 C 0.022 3.978 19 N -0.393 5.393 20 C -0.379 4.379 21 H 0.095 0.905 22 C -0.270 4.270 23 N -0.622 5.622 24 Si 0.802 3.198 25 H -0.204 1.204 26 H -0.223 1.223 27 H -0.201 1.201 28 C -0.146 4.146 29 C -0.069 4.069 30 H 0.120 0.880 31 H 0.118 0.882 32 H 0.114 0.886 33 H 0.125 0.875 34 H 0.121 0.879 35 H 0.252 0.748 36 H 0.093 0.907 37 H 0.065 0.935 38 H 0.092 0.908 39 H 0.105 0.895 40 H 0.109 0.891 41 H 0.080 0.920 42 H 0.063 0.937 43 H 0.044 0.956 44 H 0.035 0.965 45 H 0.203 0.797 46 H 0.060 0.940 47 H 0.098 0.902 48 H 0.139 0.861 49 H 0.132 0.868 50 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -0.589 9.330 23.270 25.078 hybrid contribution -0.284 -1.141 -1.443 1.862 sum -0.873 8.189 21.827 23.329 Atomic orbital electron populations 1.20422 0.81067 1.05699 1.05394 1.25376 0.98602 0.82400 1.02634 1.74383 0.96735 1.25544 1.22054 1.73936 1.12781 1.10039 1.20785 1.25444 0.88519 0.92281 1.03312 1.46124 1.06713 1.08928 1.54283 1.21840 0.98286 0.74314 1.05341 1.21606 0.96761 0.91173 1.04533 0.86084 1.20236 0.83628 0.87743 0.76812 1.90725 1.25740 1.82559 1.46480 1.46005 1.18732 1.06328 1.64762 1.20958 0.99786 0.79525 0.95655 0.91633 1.22092 1.02551 1.02230 0.94397 1.21761 1.00561 1.00917 0.91630 1.21594 0.98746 0.99799 0.94894 1.20882 0.96739 0.96827 0.83333 1.42646 1.43163 1.51851 1.01643 1.19633 1.13159 1.18081 0.86992 0.90544 1.25596 1.00252 1.01208 0.99940 1.69809 1.33502 1.39907 1.18982 0.85209 0.78084 0.78184 0.78296 1.20378 1.22272 1.20147 1.21745 0.96621 0.96288 0.99905 1.20466 0.89804 0.90556 1.06101 0.87987 0.88181 0.88629 0.87530 0.87882 0.74770 0.90663 0.93473 0.90771 0.89453 0.89136 0.92009 0.93679 0.95562 0.96499 0.79681 0.94030 0.90216 0.86127 0.86810 0.86294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.82 10.29 71.24 0.73 -0.09 16 2 C 0.18 3.81 8.07 138.14 1.11 4.93 16 3 N -0.35 -10.00 12.23 -50.46 -0.62 -10.62 16 4 N -0.34 -9.58 12.21 -50.28 -0.61 -10.19 16 5 C 0.17 3.54 7.75 138.14 1.07 4.61 16 6 N -0.47 -8.73 3.11 -504.65 -1.57 -10.30 16 7 C 0.12 1.76 5.48 86.53 0.47 2.23 16 8 C -0.12 -1.38 2.54 -11.39 -0.03 -1.41 16 9 H 0.12 1.32 8.12 -2.38 -0.02 1.30 16 10 C 0.53 8.61 7.12 87.66 0.62 9.23 16 11 O -0.58 -13.79 15.49 -3.02 -0.05 -13.83 16 12 N -0.71 -9.51 4.35 -442.53 -1.93 -11.44 16 13 C 0.15 2.35 2.57 44.99 0.12 2.46 16 14 H 0.07 1.43 7.58 -2.39 -0.02 1.41 16 15 C -0.15 -2.01 9.48 71.98 0.68 -1.32 16 16 C -0.11 -1.89 4.75 30.59 0.15 -1.74 16 17 C -0.11 -3.01 5.22 30.60 0.16 -2.85 16 18 C 0.15 5.39 6.26 86.38 0.54 5.93 16 19 N -0.75 -37.26 5.60 -343.44 -1.92 -39.18 16 20 C -0.25 -13.59 9.99 84.03 0.84 -12.75 16 21 H 0.08 4.00 7.83 -2.91 -0.02 3.98 16 22 C -0.08 -4.44 5.50 84.86 0.47 -3.97 16 23 N -0.97 -59.13 13.06 21.65 0.28 -58.85 16 24 Si 0.97 45.44 29.55 68.60 2.03 47.47 16 25 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 26 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 27 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 28 C -0.11 -0.78 5.23 30.81 0.16 -0.62 16 29 C -0.03 -0.32 6.34 30.05 0.19 -0.13 16 30 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.10 1.14 8.14 -2.38 -0.02 1.12 16 32 H 0.10 0.85 7.76 -2.39 -0.02 0.83 16 33 H 0.11 1.45 7.85 -2.39 -0.02 1.43 16 34 H 0.10 1.46 7.79 -2.39 -0.02 1.44 16 35 H 0.41 3.60 7.94 -92.71 -0.74 2.86 16 36 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 37 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 41 H 0.06 1.64 7.75 -2.39 -0.02 1.62 16 42 H 0.04 1.36 8.14 -2.39 -0.02 1.35 16 43 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.02 0.62 8.14 -2.39 -0.02 0.61 16 45 H 0.37 19.77 7.67 -92.71 -0.71 19.06 16 46 H 0.25 14.86 8.31 -92.71 -0.77 14.08 16 47 H 0.08 0.64 8.12 -2.38 -0.02 0.62 16 48 H 0.12 0.27 7.32 -2.38 -0.02 0.25 16 49 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 50 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -80.88 405.23 2.40 -78.48 By element: Atomic # 1 Polarization: 24.46 SS G_CDS: -0.50 Total: 23.96 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: 7.29 Total: 4.51 kcal Atomic # 7 Polarization: -134.21 SS G_CDS: -6.37 Total: -140.58 kcal Atomic # 8 Polarization: -13.79 SS G_CDS: -0.05 Total: -13.83 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -80.88 2.40 -78.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485750862.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.150 kcal (2) G-P(sol) polarization free energy of solvation -80.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds