Wall clock time and date at job start Tue Mar 31 2020 19:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30837 * 126.46341 * 2 1 4 4 N 1.28911 * 109.73846 * 179.97438 * 3 2 1 5 5 C 1.29835 * 109.47815 * 359.97196 * 4 3 2 6 6 N 1.34685 * 126.46424 * 180.02562 * 2 1 3 7 7 C 1.46264 * 128.84542 * 0.08703 * 6 2 1 8 8 C 1.53322 * 108.72629 * 162.91304 * 7 6 2 9 9 H 1.09001 * 109.45504 * 290.27198 * 8 7 6 10 10 C 1.50699 * 109.44849 * 170.32067 * 8 7 6 11 11 O 1.21280 * 120.00312 * 359.95384 * 10 8 7 12 12 N 1.34784 * 120.00292 * 179.97438 * 10 8 7 13 13 C 1.46497 * 120.00075 * 180.02562 * 12 10 8 14 14 H 1.08996 * 109.47049 * 324.99133 * 13 12 10 15 15 C 1.52997 * 109.47188 * 85.00024 * 13 12 10 16 16 C 1.53006 * 109.46631 * 204.99770 * 13 12 10 17 17 C 1.53005 * 109.46991 * 65.00087 * 16 13 12 18 18 C 1.52996 * 109.46840 * 179.97438 * 17 16 13 19 19 N 1.46495 * 109.47017 * 179.97438 * 18 17 16 20 20 C 1.36947 * 120.00173 * 180.02562 * 19 18 17 21 21 H 1.07994 * 119.99721 * 359.97438 * 20 19 18 22 22 C 1.38805 * 119.99998 * 180.02562 * 20 19 18 23 23 N 1.31626 * 120.00032 * 179.97438 * 22 20 19 24 24 Si 1.86802 * 120.00338 * 359.97438 * 22 20 19 25 25 H 1.48496 * 109.47097 * 90.00094 * 24 22 20 26 26 H 1.48497 * 109.47261 * 210.00556 * 24 22 20 27 27 H 1.48502 * 109.46920 * 329.99880 * 24 22 20 28 28 C 1.53138 * 109.56852 * 50.29928 * 8 7 6 29 29 C 1.50799 * 128.52514 * 180.13851 * 5 4 3 30 30 H 1.08994 * 109.47468 * 269.98425 * 1 2 3 31 31 H 1.09004 * 109.46969 * 29.98163 * 1 2 3 32 32 H 1.09001 * 109.46875 * 149.97721 * 1 2 3 33 33 H 1.08997 * 109.59114 * 43.14784 * 7 6 2 34 34 H 1.08995 * 109.59455 * 282.68837 * 7 6 2 35 35 H 0.96996 * 119.99132 * 359.97438 * 12 10 8 36 36 H 1.09002 * 109.47153 * 299.99573 * 15 13 12 37 37 H 1.09001 * 109.46832 * 179.97438 * 15 13 12 38 38 H 1.09004 * 109.47261 * 59.99745 * 15 13 12 39 39 H 1.08996 * 109.46945 * 184.99666 * 16 13 12 40 40 H 1.09000 * 109.47314 * 304.99788 * 16 13 12 41 41 H 1.08996 * 109.46933 * 299.99587 * 17 16 13 42 42 H 1.09006 * 109.47013 * 60.00029 * 17 16 13 43 43 H 1.08997 * 109.47293 * 300.00267 * 18 17 16 44 44 H 1.09000 * 109.47097 * 59.99927 * 18 17 16 45 45 H 0.97006 * 120.00302 * 359.97438 * 19 18 17 46 46 H 0.96994 * 119.99772 * 179.97438 * 23 22 20 47 47 H 1.09002 * 109.49678 * 50.50637 * 28 8 7 48 48 H 1.08994 * 109.50040 * 170.60945 * 28 8 7 49 49 H 1.09002 * 109.73212 * 283.69840 * 29 5 4 50 50 H 1.09007 * 109.72883 * 44.32642 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2846 1.0522 0.0000 4 7 3.5192 0.6813 0.0005 5 6 3.5815 -0.6156 0.0015 6 7 2.3075 -1.0832 -0.0005 7 6 1.9366 -2.4980 -0.0028 8 6 3.1549 -3.3256 -0.4291 9 1 3.3617 -3.1499 -1.4848 10 6 2.8688 -4.7889 -0.2106 11 8 1.7985 -5.1367 0.2416 12 7 3.8025 -5.7113 -0.5172 13 6 3.5241 -7.1339 -0.3053 14 1 2.9073 -7.2546 0.5852 15 6 2.7820 -7.6948 -1.5199 16 6 4.8418 -7.8891 -0.1192 17 6 5.5246 -7.4144 1.1652 18 6 6.8418 -8.1700 1.3516 19 7 7.4959 -7.7152 2.5809 20 6 8.6977 -8.2536 2.9567 21 1 9.1630 -9.0139 2.3469 22 6 9.3172 -7.8230 4.1218 23 7 10.4721 -8.3409 4.4832 24 14 8.5120 -6.5085 5.1769 25 1 7.6271 -7.1527 6.1804 26 1 9.5611 -5.7221 5.8742 27 1 7.7079 -5.6056 4.3147 28 6 4.3717 -2.9138 0.4044 29 6 4.8051 -1.4971 0.0053 30 1 -0.3634 -0.0003 1.0276 31 1 -0.3633 0.8902 -0.5136 32 1 -0.3633 -0.8898 -0.5142 33 1 1.1200 -2.6606 -0.7063 34 1 1.6245 -2.7957 0.9981 35 1 4.6584 -5.4331 -0.8790 36 1 1.8433 -7.1568 -1.6525 37 1 2.5753 -8.7534 -1.3623 38 1 3.3989 -7.5741 -2.4104 39 1 4.6411 -8.9582 -0.0502 40 1 5.4946 -7.6961 -0.9705 41 1 5.7252 -6.3453 1.0962 42 1 4.8717 -7.6075 2.0165 43 1 6.6408 -9.2391 1.4206 44 1 7.4948 -7.9774 0.5003 45 1 7.0782 -7.0320 3.1285 46 1 10.9051 -8.0397 5.2972 47 1 4.1100 -2.9290 1.4624 48 1 5.1904 -3.6097 0.2216 49 1 5.2483 -1.5157 -0.9904 50 1 5.5308 -1.1162 0.7239 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485750863.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:41 Heat of formation + Delta-G solvation = 32.668520 kcal Electronic energy + Delta-G solvation = -29078.432988 eV Core-core repulsion = 25141.521712 eV Total energy + Delta-G solvation = -3936.911275 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.64710 -40.61321 -37.69398 -36.76602 -35.16722 -34.53472 -32.89477 -32.07687 -31.24791 -30.74721 -29.81793 -27.71902 -26.11272 -25.46648 -23.74619 -22.83101 -21.86369 -21.29096 -21.07241 -20.85597 -19.92593 -18.02322 -17.57106 -17.04567 -16.65634 -16.56574 -15.79876 -15.27425 -14.90079 -14.75137 -14.61466 -14.52994 -14.31879 -14.06580 -13.99646 -13.71592 -13.53171 -13.13538 -13.04134 -12.75741 -12.66783 -12.62978 -12.41518 -12.31961 -11.90291 -11.81197 -11.72084 -11.56170 -11.42311 -11.07743 -10.98678 -10.64712 -10.61470 -10.52154 -10.46728 -10.21253 -10.17020 -9.64159 -9.43068 -9.27644 -8.94430 -7.28368 -5.81383 -3.17324 1.47765 1.98761 2.13153 2.56742 2.75424 3.32425 3.35748 3.41772 3.59356 3.81404 3.94197 4.01459 4.10850 4.40071 4.46794 4.53480 4.54581 4.61483 4.68652 4.79135 4.82297 4.92077 4.98764 5.03929 5.16960 5.20707 5.26231 5.29115 5.29749 5.39228 5.46588 5.47951 5.50702 5.55228 5.63068 5.70974 5.80256 5.85783 5.87272 5.96459 5.98921 6.16957 6.18910 6.50652 6.65460 6.68901 7.06735 7.75538 7.94635 8.37767 8.45292 9.16660 9.89063 10.08477 11.37021 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.010698 B = 0.002761 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2616.594352 B =10140.208710 C =12114.321073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.178 3.822 3 N -0.300 5.300 4 N -0.289 5.289 5 C 0.174 3.826 6 N -0.470 5.470 7 C 0.125 3.875 8 C -0.124 4.124 9 H 0.112 0.888 10 C 0.527 3.473 11 O -0.538 6.538 12 N -0.715 5.715 13 C 0.140 3.860 14 H 0.090 0.910 15 C -0.163 4.163 16 C -0.124 4.124 17 C -0.129 4.129 18 C 0.157 3.843 19 N -0.758 5.758 20 C -0.246 4.246 21 H 0.090 0.910 22 C 0.004 3.996 23 N -0.934 5.934 24 Si 0.886 3.114 25 H -0.284 1.284 26 H -0.290 1.290 27 H -0.278 1.278 28 C -0.121 4.121 29 C -0.032 4.032 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.077 0.923 33 H 0.102 0.898 34 H 0.103 0.897 35 H 0.403 0.597 36 H 0.057 0.943 37 H 0.068 0.932 38 H 0.057 0.943 39 H 0.082 0.918 40 H 0.070 0.930 41 H 0.059 0.941 42 H 0.061 0.939 43 H 0.026 0.974 44 H 0.025 0.975 45 H 0.360 0.640 46 H 0.260 0.740 47 H 0.082 0.918 48 H 0.096 0.904 49 H 0.099 0.901 50 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.115 10.101 -15.450 28.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.089 4.089 3 N -0.141 5.141 4 N -0.128 5.128 5 C -0.094 4.094 6 N -0.162 5.162 7 C 0.002 3.998 8 C -0.145 4.145 9 H 0.130 0.870 10 C 0.312 3.688 11 O -0.415 6.415 12 N -0.366 5.366 13 C 0.036 3.964 14 H 0.108 0.892 15 C -0.221 4.221 16 C -0.162 4.162 17 C -0.167 4.167 18 C 0.030 3.970 19 N -0.403 5.403 20 C -0.376 4.376 21 H 0.107 0.893 22 C -0.192 4.192 23 N -0.582 5.582 24 Si 0.716 3.284 25 H -0.211 1.211 26 H -0.217 1.217 27 H -0.204 1.204 28 C -0.160 4.160 29 C -0.071 4.071 30 H 0.105 0.895 31 H 0.114 0.886 32 H 0.096 0.904 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.238 0.762 36 H 0.077 0.923 37 H 0.087 0.913 38 H 0.076 0.924 39 H 0.101 0.899 40 H 0.089 0.911 41 H 0.078 0.922 42 H 0.080 0.920 43 H 0.044 0.956 44 H 0.043 0.957 45 H 0.192 0.808 46 H 0.070 0.930 47 H 0.101 0.899 48 H 0.115 0.885 49 H 0.118 0.882 50 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -21.263 11.128 -15.125 28.367 hybrid contribution -0.401 -0.326 0.668 0.844 sum -21.664 10.802 -14.457 28.196 Atomic orbital electron populations 1.20225 0.83662 1.04515 1.04199 1.24678 0.97114 0.82723 1.04395 1.74500 0.96132 1.23656 1.19762 1.74064 1.12244 1.08035 1.18486 1.24742 0.87013 0.92617 1.04999 1.45986 1.07033 1.08384 1.54770 1.21742 0.97444 0.75435 1.05208 1.21637 0.96559 0.92891 1.03460 0.87034 1.19991 0.84326 0.86949 0.77570 1.90737 1.24243 1.81947 1.44566 1.46082 1.18253 1.06871 1.65410 1.21111 0.97251 0.78882 0.99109 0.89163 1.22171 1.00551 1.01490 0.97870 1.21857 0.94790 1.00662 0.98896 1.21789 0.97731 1.00403 0.96808 1.20621 0.90754 0.96194 0.89478 1.42723 1.24129 1.47970 1.25488 1.19061 0.95125 1.17669 1.05743 0.89256 1.24691 0.96817 0.99646 0.98057 1.69703 1.16928 1.45785 1.25743 0.86532 0.78654 0.82326 0.80858 1.21091 1.21654 1.20447 1.21771 0.96693 0.96726 1.00762 1.20232 0.91253 0.90789 1.04856 0.89473 0.88627 0.90393 0.87990 0.87884 0.76207 0.92346 0.91314 0.92387 0.89916 0.91121 0.92177 0.91976 0.95616 0.95727 0.80753 0.93013 0.89922 0.88534 0.88239 0.87338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.39 10.29 36.01 0.37 -0.02 16 2 C 0.18 1.82 8.07 -155.46 -1.25 0.56 16 3 N -0.30 -4.11 12.23 32.70 0.40 -3.71 16 4 N -0.29 -4.03 12.21 32.76 0.40 -3.63 16 5 C 0.17 1.84 7.75 -155.30 -1.20 0.63 16 6 N -0.47 -4.34 3.11 -110.86 -0.35 -4.68 16 7 C 0.12 0.87 5.48 -4.00 -0.02 0.85 16 8 C -0.12 -0.75 2.54 -91.53 -0.23 -0.98 16 9 H 0.11 0.51 8.12 -51.93 -0.42 0.08 16 10 C 0.53 4.34 7.12 -10.98 -0.08 4.26 16 11 O -0.54 -6.27 15.49 5.56 0.09 -6.18 16 12 N -0.71 -5.14 4.35 -53.81 -0.23 -5.37 16 13 C 0.14 1.18 2.58 -67.93 -0.17 1.00 16 14 H 0.09 0.94 7.58 -51.93 -0.39 0.54 16 15 C -0.16 -1.20 9.48 37.16 0.35 -0.84 16 16 C -0.12 -1.12 4.75 -26.73 -0.13 -1.24 16 17 C -0.13 -1.64 5.22 -26.73 -0.14 -1.78 16 18 C 0.16 2.76 6.26 -4.05 -0.03 2.74 16 19 N -0.76 -17.43 5.41 -59.92 -0.32 -17.76 16 20 C -0.25 -6.88 10.47 -15.06 -0.16 -7.03 16 21 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 22 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16 23 N -0.93 -29.11 13.97 55.49 0.78 -28.33 16 24 Si 0.89 21.83 27.74 -169.99 -4.71 17.12 16 25 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 26 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 27 H -0.28 -6.36 6.52 56.52 0.37 -6.00 16 28 C -0.12 -0.75 5.22 -26.44 -0.14 -0.89 16 29 C -0.03 -0.22 6.33 -27.61 -0.17 -0.40 16 30 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.31 7.76 -51.93 -0.40 -0.10 16 33 H 0.10 0.59 7.85 -51.93 -0.41 0.18 16 34 H 0.10 0.79 7.79 -51.93 -0.40 0.39 16 35 H 0.40 2.12 7.94 -40.82 -0.32 1.80 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.06 0.73 7.75 -51.93 -0.40 0.33 16 42 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.36 8.08 5.53 -40.82 -0.23 7.85 16 46 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 47 H 0.08 0.62 8.12 -51.93 -0.42 0.20 16 48 H 0.10 0.48 7.32 -51.93 -0.38 0.10 16 49 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 50 H 0.11 0.75 8.14 -51.92 -0.42 0.33 16 LS Contribution 402.11 15.07 6.06 6.06 Total: -1.00 -37.12 402.11 -9.45 -46.57 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -8.45 Total: 3.05 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: -3.10 Total: -3.13 kcal Atomic # 7 Polarization: -64.15 SS G_CDS: 0.67 Total: -63.48 kcal Atomic # 8 Polarization: -6.27 SS G_CDS: 0.09 Total: -6.18 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.71 Total: 17.12 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -37.12 -9.45 -46.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485750863.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.235 kcal (2) G-P(sol) polarization free energy of solvation -37.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds