Wall clock time and date at job start Tue Mar 31 2020 18:27:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35362 * 127.25043 * 2 1 4 4 N 1.35034 * 107.22864 * 179.97438 * 3 2 1 5 5 C 1.46499 * 124.88310 * 180.02562 * 4 3 2 6 6 N 1.28469 * 110.23065 * 359.72659 * 4 3 2 7 7 C 1.31805 * 110.07554 * 0.45841 * 6 4 3 8 8 C 1.47704 * 126.52256 * 179.82429 * 7 6 4 9 9 O 1.21567 * 120.00438 * 175.93769 * 8 7 6 10 10 N 1.34779 * 119.99976 * 355.93264 * 8 7 6 11 11 C 1.46505 * 119.99669 * 5.37029 * 10 8 7 12 12 C 1.46500 * 120.00435 * 185.37362 * 10 8 7 13 13 C 1.52996 * 109.47503 * 89.99425 * 12 10 8 14 14 N 1.46897 * 109.47160 * 180.02562 * 13 12 10 15 15 C 1.46901 * 110.99710 * 170.00324 * 14 13 12 16 16 C 1.53243 * 109.33682 * 172.74835 * 15 14 13 17 17 N 1.47080 * 108.52056 * 53.83260 * 16 15 14 18 18 C 1.36939 * 120.88322 * 128.79694 * 17 16 15 19 19 H 1.07996 * 119.99750 * 210.20641 * 18 17 16 20 20 C 1.38806 * 119.99997 * 30.20643 * 18 17 16 21 21 N 1.31626 * 120.00492 * 9.85871 * 20 18 17 22 22 Si 1.86803 * 120.00219 * 189.86055 * 20 18 17 23 23 H 1.48507 * 109.46849 * 59.99738 * 22 20 18 24 24 H 1.48494 * 109.47358 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.46729 * 300.00135 * 22 20 18 26 26 C 1.47078 * 118.23550 * 308.81140 * 17 16 15 27 27 C 1.46901 * 110.99831 * 45.70342 * 14 13 12 28 28 H 1.08998 * 109.46914 * 270.00148 * 1 2 3 29 29 H 1.08995 * 109.46693 * 29.99868 * 1 2 3 30 30 H 1.08993 * 109.46853 * 150.00263 * 1 2 3 31 31 H 1.07998 * 126.38458 * 359.97438 * 3 2 1 32 32 H 1.08996 * 109.47187 * 90.00336 * 5 4 3 33 33 H 1.09001 * 109.47230 * 210.00191 * 5 4 3 34 34 H 1.09002 * 109.47091 * 330.00182 * 5 4 3 35 35 H 1.09004 * 109.46811 * 275.26742 * 11 10 8 36 36 H 1.08995 * 109.47285 * 35.26721 * 11 10 8 37 37 H 1.09002 * 109.46882 * 155.27447 * 11 10 8 38 38 H 1.09009 * 109.46794 * 329.99458 * 12 10 8 39 39 H 1.08992 * 109.47035 * 210.00177 * 12 10 8 40 40 H 1.09006 * 109.46628 * 60.00460 * 13 12 10 41 41 H 1.09002 * 109.47067 * 300.00442 * 13 12 10 42 42 H 1.08998 * 109.49804 * 52.78858 * 15 14 13 43 43 H 1.08995 * 109.49421 * 292.70311 * 15 14 13 44 44 H 1.09005 * 109.62402 * 173.53717 * 16 15 14 45 45 H 1.08996 * 109.63119 * 293.92224 * 16 15 14 46 46 H 0.96994 * 120.00134 * 179.97438 * 21 20 18 47 47 H 1.09002 * 109.62930 * 170.90290 * 26 17 16 48 48 H 1.09010 * 109.62927 * 291.48023 * 26 17 16 49 49 H 1.09000 * 109.49295 * 67.29638 * 27 14 13 50 50 H 1.08998 * 109.51315 * 307.22053 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3264 1.0775 0.0000 4 7 3.5951 0.6151 0.0006 5 6 4.7938 1.4574 0.0013 6 7 3.5998 -0.6695 0.0067 7 6 2.3635 -1.1265 0.0005 8 6 1.9505 -2.5446 0.0008 9 8 0.7719 -2.8345 0.0693 10 7 2.8804 -3.5173 -0.0749 11 6 4.3042 -3.1739 -0.0388 12 6 2.4675 -4.9179 -0.1934 13 6 2.3313 -5.2862 -1.6721 14 7 1.9167 -6.6905 -1.7908 15 6 1.5470 -7.0150 -3.1750 16 6 1.2968 -8.5222 -3.2933 17 7 0.3074 -8.9127 -2.2775 18 6 -0.8023 -9.6385 -2.6197 19 1 -1.7187 -9.5196 -2.0608 20 6 -0.7491 -10.5272 -3.6847 21 7 0.4073 -10.8186 -4.2418 22 14 -2.3189 -11.3096 -4.3276 23 1 -3.2469 -10.2474 -4.7924 24 1 -1.9938 -12.2128 -5.4605 25 1 -2.9639 -12.0898 -3.2411 26 6 0.5413 -8.5027 -0.8846 27 6 0.8213 -6.9963 -0.8610 28 1 -0.3633 0.0000 1.0277 29 1 -0.3632 0.8900 -0.5138 30 1 -0.3633 -0.8900 -0.5138 31 1 2.0221 2.1137 -0.0004 32 1 5.0906 1.6661 1.0291 33 1 5.6030 0.9382 -0.5122 34 1 4.5796 2.3946 -0.5125 35 1 4.6405 -2.9128 -1.0423 36 1 4.4565 -2.3251 0.6278 37 1 4.8749 -4.0285 0.3247 38 1 1.5084 -5.0574 0.3056 39 1 3.2162 -5.5581 0.2731 40 1 3.2904 -5.1468 -2.1710 41 1 1.5826 -4.6460 -2.1385 42 1 2.3571 -6.7271 -3.8449 43 1 0.6407 -6.4735 -3.4459 44 1 0.9120 -8.7525 -4.2869 45 1 2.2289 -9.0623 -3.1275 46 1 0.4444 -11.4398 -4.9857 47 1 -0.3429 -8.7203 -0.2854 48 1 1.4003 -9.0411 -0.4837 49 1 -0.0750 -6.4551 -1.1642 50 1 1.1048 -6.6948 0.1474 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494095978.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:28 Heat of formation + Delta-G solvation = 74.642148 kcal Electronic energy + Delta-G solvation = -29414.927636 eV Core-core repulsion = 25479.836474 eV Total energy + Delta-G solvation = -3935.091162 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.65828 -40.84199 -39.66061 -37.13430 -35.99130 -34.84588 -33.45867 -32.86558 -31.90155 -30.53711 -29.05102 -28.12992 -27.99573 -26.72707 -25.30921 -24.25152 -23.56169 -22.35168 -21.63947 -20.85866 -20.18330 -18.77819 -18.22178 -17.66078 -17.38179 -17.18586 -16.89782 -16.37085 -15.89728 -15.86543 -15.56314 -15.28149 -15.11684 -14.93021 -14.67115 -14.40196 -14.26080 -14.08067 -13.90983 -13.87727 -13.61082 -13.29318 -13.20515 -13.13714 -13.09431 -12.94577 -12.77790 -12.61911 -12.37649 -12.13016 -12.03545 -11.93357 -11.64503 -11.54232 -11.45926 -11.06877 -10.59819 -10.20653 -9.86614 -9.58950 -9.36293 -8.63874 -7.87325 -5.37973 0.49674 1.14656 1.45513 1.48326 1.55081 1.57043 1.97088 2.29749 2.49755 3.00960 3.28111 3.29824 3.66405 3.77820 3.89438 3.93504 4.07216 4.25639 4.30544 4.34790 4.37158 4.44754 4.45297 4.47815 4.54071 4.58817 4.59147 4.66941 4.71494 4.74217 4.77517 4.84902 4.86206 4.89352 4.96270 5.01236 5.07372 5.17942 5.19153 5.36407 5.45338 5.52442 5.59790 5.68490 5.93010 6.09717 6.15625 6.27710 6.39176 6.83600 7.10724 7.13716 7.82125 8.38143 9.18955 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.024393 B = 0.002197 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.617123 B =12742.739770 C =13244.343045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.177 4.177 3 C -0.003 4.003 4 N -0.279 5.279 5 C 0.076 3.924 6 N -0.262 5.262 7 C -0.049 4.049 8 C 0.590 3.410 9 O -0.569 6.569 10 N -0.603 5.603 11 C 0.082 3.918 12 C 0.119 3.881 13 C 0.053 3.947 14 N -0.529 5.529 15 C 0.050 3.950 16 C 0.189 3.811 17 N -0.616 5.616 18 C -0.267 4.267 19 H 0.063 0.937 20 C -0.050 4.050 21 N -0.936 5.936 22 Si 0.973 3.027 23 H -0.280 1.280 24 H -0.290 1.290 25 H -0.274 1.274 26 C 0.146 3.854 27 C 0.049 3.951 28 H 0.066 0.934 29 H 0.087 0.913 30 H 0.047 0.953 31 H 0.224 0.776 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.126 0.874 35 H 0.056 0.944 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.073 0.927 39 H 0.110 0.890 40 H 0.086 0.914 41 H 0.008 0.992 42 H 0.082 0.918 43 H 0.010 0.990 44 H 0.059 0.941 45 H 0.005 0.995 46 H 0.252 0.748 47 H 0.059 0.941 48 H 0.025 0.975 49 H 0.010 0.990 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.468 30.514 10.372 34.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.187 4.187 3 C -0.147 4.147 4 N -0.067 5.067 5 C -0.062 4.062 6 N -0.100 5.100 7 C -0.207 4.207 8 C 0.379 3.621 9 O -0.446 6.446 10 N -0.335 5.335 11 C -0.060 4.060 12 C -0.003 4.003 13 C -0.076 4.076 14 N -0.254 5.254 15 C -0.079 4.079 16 C 0.063 3.937 17 N -0.340 5.340 18 C -0.397 4.397 19 H 0.081 0.919 20 C -0.246 4.246 21 N -0.581 5.581 22 Si 0.801 3.199 23 H -0.206 1.206 24 H -0.216 1.216 25 H -0.200 1.200 26 C 0.020 3.980 27 C -0.080 4.080 28 H 0.085 0.915 29 H 0.106 0.894 30 H 0.066 0.934 31 H 0.240 0.760 32 H 0.120 0.880 33 H 0.120 0.880 34 H 0.145 0.855 35 H 0.075 0.925 36 H 0.111 0.889 37 H 0.108 0.892 38 H 0.091 0.909 39 H 0.128 0.872 40 H 0.105 0.895 41 H 0.026 0.974 42 H 0.100 0.900 43 H 0.028 0.972 44 H 0.077 0.923 45 H 0.023 0.977 46 H 0.061 0.939 47 H 0.077 0.923 48 H 0.043 0.957 49 H 0.028 0.972 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 13.540 29.677 10.423 34.244 hybrid contribution -2.248 -0.151 -0.923 2.434 sum 11.292 29.526 9.501 33.008 Atomic orbital electron populations 1.20090 0.88221 1.02608 1.02234 1.20674 0.98018 0.91167 1.08864 1.23156 0.82985 1.01468 1.07055 1.45965 1.08630 1.03507 1.48605 1.22643 0.83187 0.94253 1.06155 1.73624 1.21752 0.94938 1.19715 1.21676 0.90950 0.94214 1.13829 1.17434 0.84890 0.83949 0.75875 1.90757 1.18548 1.83283 1.52038 1.47780 1.08214 1.05996 1.71521 1.22181 0.77981 1.02872 1.02961 1.21618 1.02444 0.80715 0.95545 1.22392 1.00095 0.87636 0.97512 1.62037 1.37679 1.19603 1.06065 1.22629 0.97790 0.98256 0.89249 1.20608 0.90556 0.89113 0.93439 1.44352 1.24329 1.62434 1.02928 1.19471 0.89880 1.15715 1.14660 0.91887 1.25940 0.99683 0.97874 1.01063 1.70126 1.24690 1.37236 1.26095 0.85263 0.79119 0.77942 0.77605 1.20606 1.21583 1.19959 1.21134 0.98245 0.92438 0.86142 1.22596 0.91357 0.97083 0.96940 0.91503 0.89398 0.93366 0.75972 0.87985 0.88040 0.85526 0.92512 0.88937 0.89207 0.90879 0.87232 0.89540 0.97397 0.89986 0.97210 0.92261 0.97675 0.93930 0.92274 0.95735 0.97170 0.88441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.52 9.90 71.24 0.70 -0.82 16 2 C -0.18 -3.77 6.25 -19.72 -0.12 -3.89 16 3 C 0.00 -0.04 11.40 83.54 0.95 0.91 16 4 N -0.28 -3.47 3.70 -369.46 -1.37 -4.83 16 5 C 0.08 0.10 11.31 127.77 1.44 1.54 16 6 N -0.26 -5.14 8.55 -48.18 -0.41 -5.56 16 7 C -0.05 -1.26 6.84 42.46 0.29 -0.97 16 8 C 0.59 18.20 7.67 86.74 0.67 18.87 16 9 O -0.57 -21.47 14.71 -3.93 -0.06 -21.53 16 10 N -0.60 -15.76 2.87 -850.35 -2.44 -18.20 16 11 C 0.08 1.52 9.50 127.77 1.21 2.73 16 12 C 0.12 3.32 4.74 86.38 0.41 3.73 16 13 C 0.05 1.68 5.59 86.30 0.48 2.16 16 14 N -0.53 -20.16 4.78 -895.26 -4.28 -24.44 16 15 C 0.05 2.16 5.58 86.38 0.48 2.64 16 16 C 0.19 9.88 5.36 86.35 0.46 10.35 16 17 N -0.62 -33.66 3.03 -698.12 -2.12 -35.77 16 18 C -0.27 -15.62 9.63 84.03 0.81 -14.81 16 19 H 0.06 3.60 7.85 -2.91 -0.02 3.58 16 20 C -0.05 -2.93 5.08 84.86 0.43 -2.50 16 21 N -0.94 -57.16 10.99 21.65 0.24 -56.92 16 22 Si 0.97 46.67 29.56 68.60 2.03 48.70 16 23 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 24 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 25 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 26 C 0.15 6.67 6.69 86.35 0.58 7.24 16 27 C 0.05 1.94 5.04 86.38 0.44 2.38 16 28 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.05 1.32 6.80 -2.39 -0.02 1.30 16 31 H 0.22 0.62 8.06 -2.91 -0.02 0.60 16 32 H 0.10 -0.15 8.14 -2.39 -0.02 -0.17 16 33 H 0.10 0.10 8.14 -2.39 -0.02 0.08 16 34 H 0.13 -0.58 8.13 -2.39 -0.02 -0.60 16 35 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 36 H 0.09 1.68 5.65 -2.39 -0.01 1.66 16 37 H 0.09 1.29 7.83 -2.39 -0.02 1.28 16 38 H 0.07 2.32 5.39 -2.38 -0.01 2.31 16 39 H 0.11 2.56 7.86 -2.39 -0.02 2.54 16 40 H 0.09 2.48 8.14 -2.38 -0.02 2.46 16 41 H 0.01 0.28 8.08 -2.39 -0.02 0.27 16 42 H 0.08 3.11 8.11 -2.39 -0.02 3.09 16 43 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 44 H 0.06 3.44 6.16 -2.38 -0.01 3.42 16 45 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 46 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 47 H 0.06 2.60 7.95 -2.39 -0.02 2.58 16 48 H 0.02 1.13 8.14 -2.38 -0.02 1.11 16 49 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 50 H 0.10 3.23 5.73 -2.39 -0.01 3.22 16 Total: -1.00 -80.78 393.42 1.76 -79.02 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: 0.92 Total: 9.97 kcal Atomic # 6 Polarization: 20.32 SS G_CDS: 9.24 Total: 29.56 kcal Atomic # 7 Polarization: -135.34 SS G_CDS: -10.38 Total: -145.72 kcal Atomic # 8 Polarization: -21.47 SS G_CDS: -0.06 Total: -21.53 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 2.03 Total: 48.70 kcal Total: -80.78 1.76 -79.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494095978.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.662 kcal (2) G-P(sol) polarization free energy of solvation -80.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds