Wall clock time and date at job start Tue Mar 31 2020 18:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39666 * 127.32285 * 2 1 4 4 N 1.30869 * 107.86365 * 180.26942 * 3 2 1 5 5 N 1.28437 * 110.92274 * 359.76871 * 4 3 2 6 6 C 1.46505 * 125.18888 * 180.02562 * 5 4 3 7 7 C 1.36594 * 109.62350 * 0.02562 * 5 4 3 8 8 C 1.47164 * 126.88426 * 179.97438 * 7 5 4 9 9 O 1.21627 * 119.99838 * 260.57369 * 8 7 5 10 10 N 1.34778 * 120.00295 * 80.58259 * 8 7 5 11 11 C 1.46497 * 119.99860 * 5.02913 * 10 8 7 12 12 C 1.46502 * 120.00028 * 185.03338 * 10 8 7 13 13 C 1.52998 * 109.47139 * 89.99523 * 12 10 8 14 14 N 1.46904 * 109.47302 * 179.97438 * 13 12 10 15 15 C 1.46892 * 111.00189 * 170.00123 * 14 13 12 16 16 C 1.53238 * 109.34190 * 172.74903 * 15 14 13 17 17 N 1.47079 * 108.51813 * 53.83089 * 16 15 14 18 18 C 1.36939 * 120.88062 * 128.79776 * 17 16 15 19 19 H 1.08004 * 120.00089 * 210.66805 * 18 17 16 20 20 C 1.38808 * 120.00176 * 30.66952 * 18 17 16 21 21 N 1.31622 * 119.99963 * 9.89252 * 20 18 17 22 22 Si 1.86804 * 120.00042 * 189.89679 * 20 18 17 23 23 H 1.48500 * 109.46932 * 89.99968 * 22 20 18 24 24 H 1.48500 * 109.47116 * 210.00130 * 22 20 18 25 25 H 1.48504 * 109.47033 * 329.99655 * 22 20 18 26 26 C 1.47079 * 118.23660 * 308.81345 * 17 16 15 27 27 C 1.46900 * 110.99584 * 45.69941 * 14 13 12 28 28 H 1.08997 * 109.47116 * 270.10967 * 1 2 3 29 29 H 1.09006 * 109.46459 * 30.10714 * 1 2 3 30 30 H 1.08998 * 109.47442 * 150.10327 * 1 2 3 31 31 H 1.08001 * 126.07356 * 0.05919 * 3 2 1 32 32 H 1.09003 * 109.46922 * 274.91079 * 6 5 4 33 33 H 1.08999 * 109.47061 * 34.91204 * 6 5 4 34 34 H 1.09002 * 109.47334 * 154.91851 * 6 5 4 35 35 H 1.08999 * 109.47117 * 275.19871 * 11 10 8 36 36 H 1.08994 * 109.47500 * 35.19986 * 11 10 8 37 37 H 1.09000 * 109.47233 * 155.20172 * 11 10 8 38 38 H 1.08994 * 109.47254 * 329.99642 * 12 10 8 39 39 H 1.08996 * 109.46779 * 209.99608 * 12 10 8 40 40 H 1.09007 * 109.47268 * 60.00026 * 13 12 10 41 41 H 1.09000 * 109.47124 * 300.00176 * 13 12 10 42 42 H 1.09001 * 109.49441 * 52.78556 * 15 14 13 43 43 H 1.09007 * 109.49191 * 292.70914 * 15 14 13 44 44 H 1.09000 * 109.62916 * 173.53943 * 16 15 14 45 45 H 1.08994 * 109.63061 * 293.92514 * 16 15 14 46 46 H 0.96999 * 119.99735 * 180.02562 * 21 20 18 47 47 H 1.09001 * 109.62605 * 170.89832 * 26 17 16 48 48 H 1.09004 * 109.62982 * 291.47751 * 26 17 16 49 49 H 1.09000 * 109.49209 * 67.29525 * 27 14 13 50 50 H 1.09000 * 109.51780 * 307.22730 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3538 1.1107 0.0000 4 7 3.5877 0.6747 -0.0059 5 7 3.6205 -0.6092 -0.0048 6 6 4.8390 -1.4226 -0.0097 7 6 2.3461 -1.1007 0.0016 8 6 1.9455 -2.5168 0.0042 9 8 1.6089 -3.0555 -1.0330 10 7 1.9513 -3.2166 1.1560 11 6 2.2494 -2.5418 2.4217 12 6 1.6596 -4.6523 1.1423 13 6 2.9610 -5.4354 0.9582 14 7 2.6686 -6.8749 0.9450 15 6 3.8487 -7.6481 0.5359 16 6 3.5607 -9.1433 0.7086 17 7 2.3229 -9.4673 -0.0166 18 6 2.2817 -10.5067 -0.9073 19 1 1.6193 -10.4619 -1.7592 20 6 3.0912 -11.6178 -0.7153 21 7 3.7506 -11.7643 0.4144 22 14 3.2447 -12.9052 -2.0601 23 1 4.3713 -12.5491 -2.9598 24 1 3.5014 -14.2332 -1.4471 25 1 1.9836 -12.9566 -2.8425 26 6 1.1306 -8.6453 0.2399 27 6 1.5142 -7.1698 0.0857 28 1 -0.3633 0.0020 1.0276 29 1 -0.3632 0.8891 -0.5155 30 1 -0.3634 -0.8909 -0.5122 31 1 2.0452 2.1456 0.0009 32 1 5.1853 -1.5522 -1.0351 33 1 5.6118 -0.9229 0.5744 34 1 4.6265 -2.3981 0.4279 35 1 3.3292 -2.4949 2.5629 36 1 1.8417 -1.5312 2.3995 37 1 1.7992 -3.0972 3.2444 38 1 0.9807 -4.8772 0.3198 39 1 1.1943 -4.9374 2.0858 40 1 3.6400 -5.2104 1.7807 41 1 3.4263 -5.1501 0.0147 42 1 4.7002 -7.3677 1.1560 43 1 4.0755 -7.4397 -0.5097 44 1 4.3872 -9.7249 0.3003 45 1 3.4392 -9.3729 1.7671 46 1 4.3165 -12.5406 0.5484 47 1 0.3504 -8.8977 -0.4782 48 1 0.7720 -8.8264 1.2532 49 1 1.7735 -6.9681 -0.9536 50 1 0.6724 -6.5425 0.3789 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494102455.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:34 Heat of formation + Delta-G solvation = 90.953486 kcal Electronic energy + Delta-G solvation = -29803.654145 eV Core-core repulsion = 25869.270296 eV Total energy + Delta-G solvation = -3934.383849 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.84884 -39.96439 -38.16620 -36.04010 -34.39925 -34.31556 -32.30676 -31.42370 -30.34373 -29.25997 -28.51587 -27.08339 -26.51702 -25.94022 -23.86659 -22.84399 -22.30489 -21.31857 -20.94204 -19.36150 -19.05359 -17.91482 -17.14489 -16.74259 -16.16780 -16.00469 -15.67049 -14.97684 -14.72663 -14.49797 -14.23817 -14.11298 -13.76988 -13.66852 -13.53831 -13.49792 -13.35727 -13.29717 -13.02563 -12.86806 -12.80271 -12.67732 -12.44439 -12.28034 -11.95589 -11.38915 -11.14239 -10.94179 -10.89393 -10.71704 -10.47322 -10.40908 -10.29469 -10.06740 -9.77261 -9.64753 -9.45286 -8.98969 -8.96212 -8.50532 -7.86068 -6.59592 -5.76950 -3.23955 1.33996 1.79149 2.35477 2.41970 2.71900 3.37950 3.44401 3.45940 3.99076 4.14463 4.41532 4.50634 4.69127 4.72011 4.76403 4.80648 4.91783 4.98241 4.99820 5.06206 5.15901 5.31566 5.33739 5.39821 5.41345 5.41859 5.48952 5.65241 5.74613 5.79079 5.87080 5.91733 5.93605 6.15829 6.17950 6.25245 6.25679 6.35683 6.41748 6.54794 6.70276 6.92797 6.94753 7.25499 7.54894 7.64185 7.71182 7.72946 7.76019 7.81864 8.47688 9.23665 9.84811 10.45063 11.31539 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.024263 B = 0.002303 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.761406 B =12156.836067 C =12307.320414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.160 4.160 3 C 0.005 3.995 4 N -0.284 5.284 5 N -0.272 5.272 6 C 0.086 3.914 7 C -0.025 4.025 8 C 0.590 3.410 9 O -0.512 6.512 10 N -0.604 5.604 11 C 0.079 3.921 12 C 0.109 3.891 13 C 0.042 3.958 14 N -0.528 5.528 15 C 0.036 3.964 16 C 0.180 3.820 17 N -0.595 5.595 18 C -0.251 4.251 19 H 0.064 0.936 20 C 0.003 3.997 21 N -0.906 5.906 22 Si 0.905 3.095 23 H -0.288 1.288 24 H -0.290 1.290 25 H -0.279 1.279 26 C 0.149 3.851 27 C 0.036 3.964 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.186 0.814 32 H 0.087 0.913 33 H 0.100 0.900 34 H 0.091 0.909 35 H 0.054 0.946 36 H 0.071 0.929 37 H 0.083 0.917 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.069 0.931 41 H 0.028 0.972 42 H 0.059 0.941 43 H 0.025 0.975 44 H 0.089 0.911 45 H 0.027 0.973 46 H 0.254 0.746 47 H 0.055 0.945 48 H 0.026 0.974 49 H 0.030 0.970 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.824 25.253 5.208 25.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.171 4.171 3 C -0.172 4.172 4 N -0.114 5.114 5 N -0.060 5.060 6 C -0.054 4.054 7 C -0.154 4.154 8 C 0.374 3.626 9 O -0.385 6.385 10 N -0.338 5.338 11 C -0.065 4.065 12 C -0.012 4.012 13 C -0.088 4.088 14 N -0.253 5.253 15 C -0.093 4.093 16 C 0.054 3.946 17 N -0.319 5.319 18 C -0.381 4.381 19 H 0.082 0.918 20 C -0.196 4.196 21 N -0.551 5.551 22 Si 0.735 3.265 23 H -0.215 1.215 24 H -0.216 1.216 25 H -0.204 1.204 26 C 0.022 3.978 27 C -0.093 4.093 28 H 0.087 0.913 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.203 0.797 32 H 0.106 0.894 33 H 0.119 0.881 34 H 0.110 0.890 35 H 0.073 0.927 36 H 0.089 0.911 37 H 0.102 0.898 38 H 0.112 0.888 39 H 0.110 0.890 40 H 0.088 0.912 41 H 0.046 0.954 42 H 0.077 0.923 43 H 0.043 0.957 44 H 0.107 0.893 45 H 0.045 0.955 46 H 0.064 0.936 47 H 0.074 0.926 48 H 0.044 0.956 49 H 0.048 0.952 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.761 24.882 5.155 25.422 hybrid contribution -0.202 -0.619 -1.387 1.532 sum -0.963 24.263 3.768 24.573 Atomic orbital electron populations 1.20142 0.88339 1.03097 1.02140 1.20679 0.96906 0.90626 1.08892 1.23444 0.87699 0.99881 1.06207 1.73148 1.24462 0.93153 1.20658 1.45519 1.05428 1.03718 1.51348 1.22209 0.83807 0.94428 1.04978 1.21294 0.86140 0.94634 1.13296 1.17104 0.78193 0.83512 0.83761 1.90886 1.46375 1.69560 1.31631 1.47851 1.69467 1.09563 1.06917 1.21840 1.01026 0.98213 0.85374 1.21863 0.98035 0.76875 1.04472 1.22417 0.96654 0.89623 1.00093 1.62086 1.06756 1.03265 1.53205 1.22929 0.90775 0.98393 0.97201 1.20855 0.90608 0.87638 0.95526 1.44064 1.05073 1.34090 1.48657 1.19199 1.23078 0.94291 1.01492 0.91803 1.25163 1.00992 0.96944 0.96467 1.69966 1.32680 1.29397 1.23068 0.86246 0.78000 0.81037 0.81206 1.21496 1.21650 1.20422 1.20996 0.90480 0.88046 0.98241 1.22767 0.92612 0.99628 0.94335 0.91313 0.90899 0.91548 0.79738 0.89414 0.88128 0.88988 0.92745 0.91077 0.89841 0.88828 0.89028 0.91215 0.95378 0.92274 0.95701 0.89291 0.95518 0.93612 0.92611 0.95638 0.95208 0.91610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.63 10.28 36.01 0.37 -0.26 16 2 C -0.16 -1.62 6.29 -104.03 -0.65 -2.28 16 3 C 0.01 0.05 12.00 -17.43 -0.21 -0.16 16 4 N -0.28 -3.09 11.90 30.59 0.36 -2.73 16 5 N -0.27 -2.86 3.75 -63.88 -0.24 -3.10 16 6 C 0.09 0.65 11.22 59.85 0.67 1.32 16 7 C -0.03 -0.29 4.97 -82.06 -0.41 -0.69 16 8 C 0.59 7.59 6.63 -12.64 -0.08 7.50 16 9 O -0.51 -8.65 16.66 5.25 0.09 -8.56 16 10 N -0.60 -6.40 2.87 -182.96 -0.53 -6.92 16 11 C 0.08 0.57 10.14 59.85 0.61 1.18 16 12 C 0.11 1.32 4.74 -4.04 -0.02 1.30 16 13 C 0.04 0.58 5.59 -3.82 -0.02 0.56 16 14 N -0.53 -9.26 4.78 -234.32 -1.12 -10.38 16 15 C 0.04 0.71 5.58 -3.71 -0.02 0.69 16 16 C 0.18 4.36 5.36 -3.60 -0.02 4.34 16 17 N -0.60 -15.28 3.03 -172.02 -0.52 -15.80 16 18 C -0.25 -6.99 9.62 -15.06 -0.14 -7.13 16 19 H 0.06 1.76 7.85 -52.48 -0.41 1.34 16 20 C 0.00 0.08 5.08 -17.43 -0.09 -0.01 16 21 N -0.91 -26.37 11.02 55.49 0.61 -25.76 16 22 Si 0.91 21.89 29.57 -169.99 -5.03 16.87 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 26 C 0.15 3.21 6.69 -3.60 -0.02 3.19 16 27 C 0.04 0.66 5.04 -3.70 -0.02 0.64 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.63 8.07 -51.93 -0.42 0.21 16 31 H 0.19 1.13 8.06 -52.49 -0.42 0.70 16 32 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.09 0.67 7.65 -51.93 -0.40 0.27 16 35 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.07 0.50 7.21 -51.93 -0.37 0.13 16 37 H 0.08 0.49 7.83 -51.93 -0.41 0.08 16 38 H 0.09 1.31 5.40 -51.93 -0.28 1.03 16 39 H 0.09 0.97 7.86 -51.93 -0.41 0.57 16 40 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.03 0.44 8.08 -51.93 -0.42 0.02 16 42 H 0.06 1.04 8.11 -51.93 -0.42 0.61 16 43 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.09 2.39 6.20 -51.93 -0.32 2.07 16 45 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 47 H 0.06 1.16 7.95 -51.93 -0.41 0.75 16 48 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 49 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 50 H 0.07 1.02 5.73 -51.93 -0.30 0.73 16 LS Contribution 399.85 15.07 6.03 6.03 Total: -1.00 -34.09 399.85 -8.76 -42.86 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -8.36 Total: -2.67 kcal Atomic # 6 Polarization: 10.24 SS G_CDS: -0.06 Total: 10.18 kcal Atomic # 7 Polarization: -63.26 SS G_CDS: -1.43 Total: -64.69 kcal Atomic # 8 Polarization: -8.65 SS G_CDS: 0.09 Total: -8.56 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.03 Total: 16.87 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.09 -8.76 -42.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494102455.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.809 kcal (2) G-P(sol) polarization free energy of solvation -34.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds