Wall clock time and date at job start Tue Mar 31 2020 18:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39666 * 127.32285 * 2 1 4 4 N 1.30869 * 107.86365 * 180.26942 * 3 2 1 5 5 N 1.28437 * 110.92274 * 359.76871 * 4 3 2 6 6 C 1.46505 * 125.18888 * 180.02562 * 5 4 3 7 7 C 1.36594 * 109.62350 * 0.02562 * 5 4 3 8 8 C 1.47164 * 126.88426 * 179.97438 * 7 5 4 9 9 O 1.21627 * 119.99838 * 260.57369 * 8 7 5 10 10 N 1.34778 * 120.00295 * 80.58259 * 8 7 5 11 11 C 1.46497 * 119.99860 * 5.02913 * 10 8 7 12 12 C 1.46502 * 120.00028 * 185.03338 * 10 8 7 13 13 C 1.52998 * 109.47139 * 89.99523 * 12 10 8 14 14 N 1.46904 * 109.47302 * 179.97438 * 13 12 10 15 15 C 1.46892 * 111.00189 * 170.00123 * 14 13 12 16 16 C 1.53238 * 109.34190 * 172.74903 * 15 14 13 17 17 N 1.47079 * 108.51813 * 53.83089 * 16 15 14 18 18 C 1.36939 * 120.88062 * 128.79776 * 17 16 15 19 19 H 1.08004 * 120.00089 * 210.66805 * 18 17 16 20 20 C 1.38808 * 120.00176 * 30.66952 * 18 17 16 21 21 N 1.31622 * 119.99963 * 9.89252 * 20 18 17 22 22 Si 1.86804 * 120.00042 * 189.89679 * 20 18 17 23 23 H 1.48500 * 109.46932 * 89.99968 * 22 20 18 24 24 H 1.48500 * 109.47116 * 210.00130 * 22 20 18 25 25 H 1.48504 * 109.47033 * 329.99655 * 22 20 18 26 26 C 1.47079 * 118.23660 * 308.81345 * 17 16 15 27 27 C 1.46900 * 110.99584 * 45.69941 * 14 13 12 28 28 H 1.08997 * 109.47116 * 270.10967 * 1 2 3 29 29 H 1.09006 * 109.46459 * 30.10714 * 1 2 3 30 30 H 1.08998 * 109.47442 * 150.10327 * 1 2 3 31 31 H 1.08001 * 126.07356 * 0.05919 * 3 2 1 32 32 H 1.09003 * 109.46922 * 274.91079 * 6 5 4 33 33 H 1.08999 * 109.47061 * 34.91204 * 6 5 4 34 34 H 1.09002 * 109.47334 * 154.91851 * 6 5 4 35 35 H 1.08999 * 109.47117 * 275.19871 * 11 10 8 36 36 H 1.08994 * 109.47500 * 35.19986 * 11 10 8 37 37 H 1.09000 * 109.47233 * 155.20172 * 11 10 8 38 38 H 1.08994 * 109.47254 * 329.99642 * 12 10 8 39 39 H 1.08996 * 109.46779 * 209.99608 * 12 10 8 40 40 H 1.09007 * 109.47268 * 60.00026 * 13 12 10 41 41 H 1.09000 * 109.47124 * 300.00176 * 13 12 10 42 42 H 1.09001 * 109.49441 * 52.78556 * 15 14 13 43 43 H 1.09007 * 109.49191 * 292.70914 * 15 14 13 44 44 H 1.09000 * 109.62916 * 173.53943 * 16 15 14 45 45 H 1.08994 * 109.63061 * 293.92514 * 16 15 14 46 46 H 0.96999 * 119.99735 * 180.02562 * 21 20 18 47 47 H 1.09001 * 109.62605 * 170.89832 * 26 17 16 48 48 H 1.09004 * 109.62982 * 291.47751 * 26 17 16 49 49 H 1.09000 * 109.49209 * 67.29525 * 27 14 13 50 50 H 1.09000 * 109.51780 * 307.22730 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3538 1.1107 0.0000 4 7 3.5877 0.6747 -0.0059 5 7 3.6205 -0.6092 -0.0048 6 6 4.8390 -1.4226 -0.0097 7 6 2.3461 -1.1007 0.0016 8 6 1.9455 -2.5168 0.0042 9 8 1.6089 -3.0555 -1.0330 10 7 1.9513 -3.2166 1.1560 11 6 2.2494 -2.5418 2.4217 12 6 1.6596 -4.6523 1.1423 13 6 2.9610 -5.4354 0.9582 14 7 2.6686 -6.8749 0.9450 15 6 3.8487 -7.6481 0.5359 16 6 3.5607 -9.1433 0.7086 17 7 2.3229 -9.4673 -0.0166 18 6 2.2817 -10.5067 -0.9073 19 1 1.6193 -10.4619 -1.7592 20 6 3.0912 -11.6178 -0.7153 21 7 3.7506 -11.7643 0.4144 22 14 3.2447 -12.9052 -2.0601 23 1 4.3713 -12.5491 -2.9598 24 1 3.5014 -14.2332 -1.4471 25 1 1.9836 -12.9566 -2.8425 26 6 1.1306 -8.6453 0.2399 27 6 1.5142 -7.1698 0.0857 28 1 -0.3633 0.0020 1.0276 29 1 -0.3632 0.8891 -0.5155 30 1 -0.3634 -0.8909 -0.5122 31 1 2.0452 2.1456 0.0009 32 1 5.1853 -1.5522 -1.0351 33 1 5.6118 -0.9229 0.5744 34 1 4.6265 -2.3981 0.4279 35 1 3.3292 -2.4949 2.5629 36 1 1.8417 -1.5312 2.3995 37 1 1.7992 -3.0972 3.2444 38 1 0.9807 -4.8772 0.3198 39 1 1.1943 -4.9374 2.0858 40 1 3.6400 -5.2104 1.7807 41 1 3.4263 -5.1501 0.0147 42 1 4.7002 -7.3677 1.1560 43 1 4.0755 -7.4397 -0.5097 44 1 4.3872 -9.7249 0.3003 45 1 3.4392 -9.3729 1.7671 46 1 4.3165 -12.5406 0.5484 47 1 0.3504 -8.8977 -0.4782 48 1 0.7720 -8.8264 1.2532 49 1 1.7735 -6.9681 -0.9536 50 1 0.6724 -6.5425 0.3789 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494102455.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:33 Heat of formation + Delta-G solvation = 67.598114 kcal Electronic energy + Delta-G solvation = -29804.666910 eV Core-core repulsion = 25869.270296 eV Total energy + Delta-G solvation = -3935.396614 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.59278 -40.96520 -39.69198 -37.20584 -36.01704 -34.99083 -33.49924 -32.92412 -31.90338 -30.58180 -29.36080 -28.20917 -27.37170 -27.04071 -25.44921 -24.32116 -23.75869 -22.28122 -21.86198 -20.85665 -20.12838 -18.79375 -18.74265 -17.94623 -17.18995 -16.88563 -16.84542 -16.51067 -15.93746 -15.86919 -15.63726 -15.31602 -15.12976 -15.08638 -14.70688 -14.47383 -14.34019 -14.23833 -14.05428 -13.92023 -13.52029 -13.40304 -13.38044 -13.18087 -13.10519 -13.06572 -12.97029 -12.65770 -12.35571 -12.14496 -12.04710 -11.94233 -11.70162 -11.55387 -11.48628 -11.37344 -10.61342 -10.20952 -9.92874 -9.69433 -9.36133 -8.64048 -7.88742 -5.39459 0.54661 0.94854 1.45182 1.45660 1.55164 1.57483 1.65370 1.90678 2.48402 2.97617 3.24705 3.28220 3.50453 3.66541 3.86291 3.96788 4.07453 4.14174 4.16682 4.18276 4.28554 4.30506 4.38769 4.42084 4.45823 4.52605 4.52855 4.59705 4.64189 4.66563 4.74202 4.81651 4.83244 4.84761 4.90102 5.00852 5.07363 5.12753 5.18450 5.28504 5.36506 5.56817 5.59316 5.69023 5.71829 6.05839 6.08852 6.16036 6.38509 6.78694 7.01740 7.13335 7.81746 8.37074 9.17432 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.024263 B = 0.002303 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.761406 B =12156.836067 C =12307.320414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.165 4.165 3 C 0.006 3.994 4 N -0.300 5.300 5 N -0.275 5.275 6 C 0.080 3.920 7 C -0.045 4.045 8 C 0.593 3.407 9 O -0.563 6.563 10 N -0.594 5.594 11 C 0.074 3.926 12 C 0.116 3.884 13 C 0.050 3.950 14 N -0.528 5.528 15 C 0.051 3.949 16 C 0.187 3.813 17 N -0.616 5.616 18 C -0.266 4.266 19 H 0.062 0.938 20 C -0.048 4.048 21 N -0.935 5.935 22 Si 0.970 3.030 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.270 1.270 26 C 0.145 3.855 27 C 0.049 3.951 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.045 0.955 31 H 0.216 0.784 32 H 0.086 0.914 33 H 0.122 0.878 34 H 0.093 0.907 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.104 0.896 38 H 0.073 0.927 39 H 0.115 0.885 40 H 0.094 0.906 41 H 0.012 0.988 42 H 0.085 0.915 43 H 0.010 0.990 44 H 0.057 0.943 45 H 0.005 0.995 46 H 0.251 0.749 47 H 0.057 0.943 48 H 0.025 0.975 49 H 0.010 0.990 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.144 27.405 6.199 28.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.175 4.175 3 C -0.171 4.171 4 N -0.131 5.131 5 N -0.064 5.064 6 C -0.060 4.060 7 C -0.174 4.174 8 C 0.378 3.622 9 O -0.440 6.440 10 N -0.326 5.326 11 C -0.067 4.067 12 C -0.007 4.007 13 C -0.079 4.079 14 N -0.254 5.254 15 C -0.078 4.078 16 C 0.061 3.939 17 N -0.340 5.340 18 C -0.396 4.396 19 H 0.080 0.920 20 C -0.244 4.244 21 N -0.580 5.580 22 Si 0.798 3.202 23 H -0.212 1.212 24 H -0.217 1.217 25 H -0.195 1.195 26 C 0.019 3.981 27 C -0.080 4.080 28 H 0.104 0.896 29 H 0.110 0.890 30 H 0.064 0.936 31 H 0.232 0.768 32 H 0.105 0.895 33 H 0.140 0.860 34 H 0.111 0.889 35 H 0.085 0.915 36 H 0.093 0.907 37 H 0.123 0.877 38 H 0.091 0.909 39 H 0.133 0.867 40 H 0.112 0.888 41 H 0.030 0.970 42 H 0.104 0.896 43 H 0.029 0.971 44 H 0.075 0.925 45 H 0.023 0.977 46 H 0.061 0.939 47 H 0.075 0.925 48 H 0.043 0.957 49 H 0.028 0.972 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -1.085 27.075 6.186 27.794 hybrid contribution -0.127 -1.214 -1.646 2.049 sum -1.212 25.861 4.540 26.284 Atomic orbital electron populations 1.20192 0.87084 1.02994 1.03217 1.21044 0.97902 0.90489 1.08113 1.23965 0.86998 1.01078 1.05075 1.73140 1.25341 0.93352 1.21234 1.45737 1.05684 1.03763 1.51213 1.22403 0.83597 0.94559 1.05428 1.21239 0.87092 0.94111 1.14944 1.17320 0.77336 0.84015 0.83504 1.90857 1.48893 1.70723 1.33508 1.47857 1.68251 1.08906 1.07601 1.22082 1.02113 0.98452 0.84072 1.21717 0.96558 0.77568 1.04820 1.22436 0.98145 0.87150 1.00191 1.62027 1.05575 1.05381 1.52379 1.22611 0.92519 0.95672 0.96993 1.20609 0.89294 0.90304 0.93643 1.44350 1.06766 1.34334 1.48589 1.19489 1.23012 0.95108 1.02020 0.92007 1.25911 1.00940 0.98926 0.98590 1.70126 1.33311 1.29844 1.24762 0.85229 0.78120 0.78251 0.78587 1.21224 1.21696 1.19479 1.21135 0.89328 0.89518 0.98074 1.22591 0.94118 0.97757 0.93529 0.89594 0.89001 0.93586 0.76795 0.89513 0.85981 0.88853 0.91518 0.90667 0.87746 0.90887 0.86654 0.88792 0.96992 0.89638 0.97137 0.92499 0.97669 0.93945 0.92494 0.95728 0.97195 0.88325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.09 10.28 71.24 0.73 -0.36 16 2 C -0.16 -3.06 6.29 -19.48 -0.12 -3.18 16 3 C 0.01 0.09 12.00 85.18 1.02 1.12 16 4 N -0.30 -6.02 11.90 -57.14 -0.68 -6.70 16 5 N -0.28 -5.43 3.75 -356.01 -1.33 -6.76 16 6 C 0.08 1.11 11.22 127.77 1.43 2.54 16 7 C -0.05 -0.99 4.97 40.79 0.20 -0.78 16 8 C 0.59 14.83 6.63 86.59 0.57 15.40 16 9 O -0.56 -19.34 16.66 -4.12 -0.07 -19.40 16 10 N -0.59 -11.41 2.87 -851.00 -2.45 -13.85 16 11 C 0.07 0.85 10.14 127.77 1.30 2.15 16 12 C 0.12 2.54 4.74 86.38 0.41 2.94 16 13 C 0.05 1.28 5.59 86.30 0.48 1.77 16 14 N -0.53 -17.87 4.78 -895.26 -4.28 -22.14 16 15 C 0.05 2.01 5.58 86.38 0.48 2.49 16 16 C 0.19 9.31 5.36 86.35 0.46 9.78 16 17 N -0.62 -32.27 3.03 -698.14 -2.11 -34.39 16 18 C -0.27 -15.12 9.62 84.03 0.81 -14.31 16 19 H 0.06 3.46 7.85 -2.91 -0.02 3.43 16 20 C -0.05 -2.74 5.08 84.86 0.43 -2.31 16 21 N -0.93 -55.73 11.02 21.65 0.24 -55.50 16 22 Si 0.97 45.65 29.57 68.60 2.03 47.68 16 23 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 24 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 25 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 26 C 0.15 6.27 6.69 86.35 0.58 6.85 16 27 C 0.05 1.77 5.04 86.38 0.44 2.20 16 28 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 30 H 0.05 0.85 8.07 -2.39 -0.02 0.83 16 31 H 0.22 1.96 8.06 -2.91 -0.02 1.93 16 32 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.09 1.24 7.65 -2.39 -0.02 1.22 16 35 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.07 0.85 7.21 -2.39 -0.02 0.83 16 37 H 0.10 0.80 7.83 -2.39 -0.02 0.78 16 38 H 0.07 1.95 5.40 -2.39 -0.01 1.94 16 39 H 0.12 2.03 7.86 -2.39 -0.02 2.01 16 40 H 0.09 2.02 8.14 -2.38 -0.02 2.01 16 41 H 0.01 0.35 8.08 -2.39 -0.02 0.34 16 42 H 0.09 2.88 8.11 -2.39 -0.02 2.86 16 43 H 0.01 0.44 8.14 -2.38 -0.02 0.42 16 44 H 0.06 3.17 6.20 -2.39 -0.01 3.15 16 45 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 46 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 47 H 0.06 2.39 7.95 -2.39 -0.02 2.38 16 48 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 49 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 50 H 0.10 2.91 5.73 -2.39 -0.01 2.90 16 Total: -1.00 -76.11 399.85 1.49 -74.62 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: 0.92 Total: 10.16 kcal Atomic # 6 Polarization: 17.06 SS G_CDS: 9.23 Total: 26.29 kcal Atomic # 7 Polarization: -128.73 SS G_CDS: -10.61 Total: -139.34 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: -0.07 Total: -19.40 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -76.11 1.49 -74.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494102455.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.215 kcal (2) G-P(sol) polarization free energy of solvation -76.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds