Wall clock time and date at job start Tue Mar 31 2020 18:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.36587 * 126.57825 * 2 1 4 4 C 1.47528 * 125.76951 * 0.03617 * 3 2 1 5 5 O 1.21592 * 120.00296 * 359.97438 * 4 3 2 6 6 N 1.34781 * 119.99852 * 180.02562 * 4 3 2 7 7 C 1.46499 * 120.00028 * 175.57028 * 6 4 3 8 8 C 1.53004 * 109.46961 * 174.06020 * 7 6 4 9 9 C 1.52995 * 109.47285 * 54.05836 * 7 6 4 10 10 N 1.46510 * 109.47115 * 60.00228 * 9 7 6 11 11 C 1.36928 * 120.00239 * 179.97438 * 10 9 7 12 12 H 1.08004 * 120.00076 * 0.02562 * 11 10 9 13 13 C 1.38816 * 120.00352 * 179.97438 * 11 10 9 14 14 N 1.31613 * 119.99865 * 180.02562 * 13 11 10 15 15 Si 1.86798 * 119.99593 * 0.02562 * 13 11 10 16 16 H 1.48500 * 109.47356 * 89.99706 * 15 13 11 17 17 H 1.48497 * 109.46810 * 209.99554 * 15 13 11 18 18 H 1.48503 * 109.47289 * 329.99564 * 15 13 11 19 19 C 1.53004 * 109.46839 * 294.05883 * 7 6 4 20 20 C 1.52996 * 117.49976 * 2.16165 * 19 7 6 21 21 C 1.52995 * 117.49830 * 293.50104 * 19 7 6 22 22 N 1.34404 * 108.46167 * 180.02562 * 3 2 1 23 23 N 1.28764 * 109.51558 * 359.75040 * 22 3 2 24 24 N 1.34810 * 126.57813 * 180.02562 * 2 1 3 25 25 C 1.46503 * 126.59751 * 359.93099 * 24 2 1 26 26 C 1.53002 * 109.46801 * 239.99859 * 25 24 2 27 27 C 1.53000 * 109.46985 * 119.99810 * 25 24 2 28 28 H 1.09004 * 109.47290 * 269.95609 * 1 2 3 29 29 H 1.08997 * 109.47219 * 29.95995 * 1 2 3 30 30 H 1.09003 * 109.46951 * 149.96235 * 1 2 3 31 31 H 0.97004 * 119.99646 * 355.56512 * 6 4 3 32 32 H 1.08998 * 109.47050 * 59.99768 * 8 7 6 33 33 H 1.08996 * 109.46491 * 179.97438 * 8 7 6 34 34 H 1.08999 * 109.47035 * 299.99538 * 8 7 6 35 35 H 1.08993 * 109.47227 * 179.97438 * 9 7 6 36 36 H 1.09003 * 109.47216 * 300.00789 * 9 7 6 37 37 H 0.96998 * 119.99715 * 359.97438 * 10 9 7 38 38 H 0.97006 * 119.99712 * 180.02562 * 14 13 11 39 39 H 1.09001 * 115.54736 * 147.83034 * 19 7 6 40 40 H 1.09000 * 117.49696 * 359.97438 * 20 19 7 41 41 H 1.09001 * 117.50009 * 145.01450 * 20 19 7 42 42 H 1.09006 * 117.49698 * 214.97601 * 21 19 7 43 43 H 1.09002 * 117.50310 * 0.02562 * 21 19 7 44 44 H 1.08997 * 109.47007 * 359.97438 * 25 24 2 45 45 H 1.08995 * 109.47327 * 59.99761 * 26 25 24 46 46 H 1.09002 * 109.46724 * 179.97438 * 26 25 24 47 47 H 1.08997 * 109.47168 * 299.99691 * 26 25 24 48 48 H 1.08998 * 109.46893 * 179.97438 * 27 25 24 49 49 H 1.08993 * 109.47522 * 299.99886 * 27 25 24 50 50 H 1.09008 * 109.46969 * 60.00270 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8736 2.5027 0.0008 5 8 0.6859 2.7627 0.0010 6 7 2.7816 3.4988 0.0001 7 6 2.3401 4.8923 -0.0971 8 6 3.5438 5.8216 0.0721 9 6 1.3149 5.1803 1.0015 10 7 1.9273 4.9525 2.3128 11 6 1.1956 5.1485 3.4535 12 1 0.1669 5.4707 3.3865 13 6 1.7756 4.9321 4.6960 14 7 1.0721 5.1201 5.7923 15 14 3.5546 4.3742 4.8117 16 1 4.4426 5.5624 4.8806 17 1 3.7361 3.5492 6.0330 18 1 3.8993 3.5674 3.6136 19 6 1.7006 5.1302 -1.4666 20 6 1.5928 3.9333 -2.4135 21 6 2.6086 5.0433 -2.6949 22 7 3.5984 0.6789 -0.0006 23 7 3.6299 -0.6083 0.0044 24 7 2.3104 -1.0826 -0.0005 25 6 1.8864 -2.4849 0.0003 26 6 2.4304 -3.1814 1.2492 27 6 2.4279 -3.1821 -1.2493 28 1 -0.3634 -0.0008 1.0277 29 1 -0.3633 0.8903 -0.5132 30 1 -0.3633 -0.8897 -0.5144 31 1 3.7274 3.2929 0.0642 32 1 4.2741 5.6163 -0.7105 33 1 3.2153 6.8583 -0.0007 34 1 3.9993 5.6520 1.0478 35 1 0.9868 6.2172 0.9294 36 1 0.4575 4.5182 0.8810 37 1 2.8510 4.6628 2.3729 38 1 1.4776 4.9692 6.6606 39 1 0.8939 5.8630 -1.4878 40 1 1.9778 2.9764 -2.0609 41 1 0.7153 3.8788 -3.0579 42 1 2.3990 5.7186 -3.5245 43 1 3.6614 4.8161 -2.5275 44 1 0.7976 -2.5352 0.0018 45 1 2.0447 -2.6847 2.1394 46 1 2.1145 -4.2247 1.2500 47 1 3.5192 -3.1311 1.2481 48 1 2.1128 -4.2256 -1.2485 49 1 2.0404 -2.6859 -2.1390 50 1 3.5168 -3.1318 -1.2504 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495292060.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:18 Heat of formation + Delta-G solvation = 105.953719 kcal Electronic energy + Delta-G solvation = -30887.450332 eV Core-core repulsion = 26953.716942 eV Total energy + Delta-G solvation = -3933.733390 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.28159 -40.15578 -37.21413 -36.56433 -35.04307 -33.44328 -32.96026 -31.69103 -30.78191 -29.81549 -27.78489 -27.74245 -26.25778 -24.07716 -23.70975 -23.06062 -22.11357 -21.08521 -20.46361 -20.23931 -18.96453 -17.71304 -17.66979 -16.54414 -16.26341 -15.81989 -15.30496 -14.90958 -14.50864 -14.31564 -14.14665 -13.91171 -13.70433 -13.58394 -13.38424 -13.25984 -13.10896 -12.76501 -12.71176 -12.56950 -12.18170 -12.13132 -12.00767 -11.96671 -11.90342 -11.59629 -11.50129 -11.18110 -11.07689 -10.95510 -10.80291 -10.77470 -10.23098 -10.12837 -10.10284 -9.89864 -9.49060 -9.38168 -9.05909 -8.68978 -8.57836 -7.03281 -5.65440 -2.97590 1.15695 1.87359 1.92668 3.39823 3.43606 3.47757 3.51162 3.62266 3.97598 4.02702 4.18550 4.35676 4.47523 4.57110 4.69069 4.78930 4.79323 4.94739 5.05551 5.08140 5.12878 5.16335 5.24091 5.31099 5.39113 5.43415 5.50669 5.56903 5.64743 5.67467 5.68216 5.70922 5.76508 5.81018 5.84381 5.94467 6.02242 6.13616 6.19886 6.27851 6.35270 6.42491 6.49877 6.60439 6.92530 7.18467 7.81267 8.07001 8.13520 8.53644 8.60319 9.34754 10.07476 10.28513 11.53715 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.009469 B = 0.004697 C = 0.003611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2956.217104 B = 5959.302842 C = 7751.476621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.123 3.877 3 C -0.102 4.102 4 C 0.614 3.386 5 O -0.516 6.516 6 N -0.706 5.706 7 C 0.196 3.804 8 C -0.149 4.149 9 C 0.143 3.857 10 N -0.750 5.750 11 C -0.229 4.229 12 H 0.089 0.911 13 C 0.001 3.999 14 N -0.939 5.939 15 Si 0.878 3.122 16 H -0.285 1.285 17 H -0.293 1.293 18 H -0.278 1.278 19 C -0.142 4.142 20 C -0.165 4.165 21 C -0.182 4.182 22 N -0.206 5.206 23 N -0.070 5.070 24 N -0.359 5.359 25 C 0.144 3.856 26 C -0.164 4.164 27 C -0.162 4.162 28 H 0.094 0.906 29 H 0.114 0.886 30 H 0.070 0.930 31 H 0.401 0.599 32 H 0.056 0.944 33 H 0.076 0.924 34 H 0.066 0.934 35 H 0.029 0.971 36 H 0.067 0.933 37 H 0.358 0.642 38 H 0.257 0.743 39 H 0.112 0.888 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.109 0.891 45 H 0.066 0.934 46 H 0.081 0.919 47 H 0.074 0.926 48 H 0.081 0.919 49 H 0.063 0.937 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.939 -14.669 -18.996 24.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.014 4.014 3 C -0.242 4.242 4 C 0.398 3.602 5 O -0.391 6.391 6 N -0.357 5.357 7 C 0.110 3.890 8 C -0.207 4.207 9 C 0.016 3.984 10 N -0.396 5.396 11 C -0.359 4.359 12 H 0.107 0.893 13 C -0.194 4.194 14 N -0.588 5.588 15 Si 0.709 3.291 16 H -0.211 1.211 17 H -0.220 1.220 18 H -0.204 1.204 19 C -0.162 4.162 20 C -0.202 4.202 21 C -0.219 4.219 22 N -0.079 5.079 23 N -0.050 5.050 24 N -0.147 5.147 25 C 0.043 3.957 26 C -0.221 4.221 27 C -0.219 4.219 28 H 0.112 0.888 29 H 0.133 0.867 30 H 0.089 0.911 31 H 0.236 0.764 32 H 0.075 0.925 33 H 0.095 0.905 34 H 0.085 0.915 35 H 0.047 0.953 36 H 0.085 0.915 37 H 0.191 0.809 38 H 0.067 0.933 39 H 0.130 0.870 40 H 0.109 0.891 41 H 0.106 0.894 42 H 0.108 0.892 43 H 0.109 0.891 44 H 0.127 0.873 45 H 0.085 0.915 46 H 0.100 0.900 47 H 0.093 0.907 48 H 0.100 0.900 49 H 0.082 0.918 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.373 -14.843 -18.859 24.116 hybrid contribution 0.831 -0.489 0.434 1.057 sum 3.204 -15.332 -18.425 24.183 Atomic orbital electron populations 1.20738 0.84760 1.05035 1.04962 1.21926 0.96261 0.86330 0.96929 1.21398 0.88899 0.95825 1.18049 1.16449 0.85787 0.82058 0.75890 1.90727 1.15764 1.82867 1.49694 1.45796 1.09803 1.05608 1.74518 1.20169 0.95388 0.79770 0.93632 1.22002 0.96686 0.99889 1.02085 1.21188 0.95062 0.98836 0.83315 1.42627 1.12120 1.83301 1.01555 1.19068 0.96575 1.37078 0.83155 0.89282 1.24605 0.97292 1.02173 0.95304 1.69699 1.35780 1.56457 0.96837 0.86624 0.87031 0.78566 0.76867 1.21143 1.21984 1.20427 1.22547 1.01735 1.01819 0.90061 1.22927 1.00705 0.94018 1.02546 1.22969 0.96768 1.02733 0.99456 1.74589 1.19269 1.04171 1.09917 1.81863 0.96391 1.03345 1.23367 1.50574 1.06326 1.07112 1.50648 1.21612 1.00476 0.75445 0.98187 1.22161 1.03183 1.00788 0.96007 1.22151 1.03179 1.00778 0.95834 0.88793 0.86740 0.91131 0.76430 0.92522 0.90509 0.91534 0.95291 0.91508 0.80903 0.93320 0.87030 0.89109 0.89399 0.89245 0.89110 0.87320 0.91517 0.89992 0.90735 0.90012 0.91789 0.90757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.03 9.41 36.01 0.34 -0.69 16 2 C 0.12 1.67 7.02 -81.88 -0.57 1.09 16 3 C -0.10 -1.66 6.99 -83.55 -0.58 -2.25 16 4 C 0.61 10.72 4.85 -12.47 -0.06 10.66 16 5 O -0.52 -9.75 11.04 5.28 0.06 -9.69 16 6 N -0.71 -11.63 4.17 -48.64 -0.20 -11.84 16 7 C 0.20 3.18 0.55 -131.82 -0.07 3.11 16 8 C -0.15 -2.17 8.18 37.16 0.30 -1.86 16 9 C 0.14 2.98 4.81 -4.04 -0.02 2.96 16 10 N -0.75 -18.59 4.98 -59.91 -0.30 -18.89 16 11 C -0.23 -6.75 10.47 -15.06 -0.16 -6.91 16 12 H 0.09 2.82 8.06 -52.48 -0.42 2.40 16 13 C 0.00 0.03 5.50 -17.43 -0.10 -0.06 16 14 N -0.94 -30.51 13.97 55.49 0.78 -29.73 16 15 Si 0.88 23.23 27.74 -169.99 -4.71 18.52 16 16 H -0.28 -7.38 7.11 56.52 0.40 -6.97 16 17 H -0.29 -7.88 7.11 56.52 0.40 -7.48 16 18 H -0.28 -7.07 6.52 56.52 0.37 -6.70 16 19 C -0.14 -1.98 4.89 -90.62 -0.44 -2.43 16 20 C -0.16 -2.19 8.62 -26.70 -0.23 -2.42 16 21 C -0.18 -2.13 9.68 -26.70 -0.26 -2.39 16 22 N -0.21 -3.41 12.04 32.85 0.40 -3.01 16 23 N -0.07 -1.05 13.67 60.35 0.82 -0.23 16 24 N -0.36 -4.35 3.28 -50.41 -0.17 -4.52 16 25 C 0.14 1.11 3.68 -67.93 -0.25 0.86 16 26 C -0.16 -1.19 9.46 37.16 0.35 -0.84 16 27 C -0.16 -1.00 9.47 37.16 0.35 -0.65 16 28 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.11 1.39 6.43 -51.93 -0.33 1.05 16 30 H 0.07 0.50 7.19 -51.93 -0.37 0.13 16 31 H 0.40 6.25 8.17 -40.82 -0.33 5.92 16 32 H 0.06 0.68 6.91 -51.93 -0.36 0.32 16 33 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.07 1.09 6.86 -51.93 -0.36 0.73 16 35 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 1.53 5.63 -51.93 -0.29 1.24 16 37 H 0.36 8.72 4.21 -40.82 -0.17 8.55 16 38 H 0.26 7.97 8.31 -40.82 -0.34 7.63 16 39 H 0.11 1.53 8.06 -51.93 -0.42 1.12 16 40 H 0.09 1.33 5.21 -51.93 -0.27 1.06 16 41 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.09 1.04 7.20 -51.93 -0.37 0.66 16 44 H 0.11 0.60 6.79 -51.93 -0.35 0.25 16 45 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 49 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 50 H 0.07 0.55 8.14 -51.92 -0.42 0.13 16 LS Contribution 393.81 15.07 5.93 5.93 Total: -1.00 -35.80 393.81 -6.67 -42.47 By element: Atomic # 1 Polarization: 20.68 SS G_CDS: -7.88 Total: 12.80 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: -1.40 Total: -1.82 kcal Atomic # 7 Polarization: -69.54 SS G_CDS: 1.33 Total: -68.21 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.06 Total: -9.69 kcal Atomic # 14 Polarization: 23.23 SS G_CDS: -4.71 Total: 18.52 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -35.80 -6.67 -42.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495292060.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.420 kcal (2) G-P(sol) polarization free energy of solvation -35.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds