Wall clock time and date at job start Tue Mar 31 2020 18:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.36587 * 126.57825 * 2 1 4 4 C 1.47528 * 125.76951 * 0.03617 * 3 2 1 5 5 O 1.21592 * 120.00296 * 359.97438 * 4 3 2 6 6 N 1.34781 * 119.99852 * 180.02562 * 4 3 2 7 7 C 1.46499 * 120.00028 * 175.57028 * 6 4 3 8 8 C 1.53004 * 109.46961 * 174.06020 * 7 6 4 9 9 C 1.52995 * 109.47285 * 54.05836 * 7 6 4 10 10 N 1.46510 * 109.47115 * 60.00228 * 9 7 6 11 11 C 1.36928 * 120.00239 * 179.97438 * 10 9 7 12 12 H 1.08004 * 120.00076 * 0.02562 * 11 10 9 13 13 C 1.38816 * 120.00352 * 179.97438 * 11 10 9 14 14 N 1.31613 * 119.99865 * 180.02562 * 13 11 10 15 15 Si 1.86798 * 119.99593 * 0.02562 * 13 11 10 16 16 H 1.48500 * 109.47356 * 89.99706 * 15 13 11 17 17 H 1.48497 * 109.46810 * 209.99554 * 15 13 11 18 18 H 1.48503 * 109.47289 * 329.99564 * 15 13 11 19 19 C 1.53004 * 109.46839 * 294.05883 * 7 6 4 20 20 C 1.52996 * 117.49976 * 2.16165 * 19 7 6 21 21 C 1.52995 * 117.49830 * 293.50104 * 19 7 6 22 22 N 1.34404 * 108.46167 * 180.02562 * 3 2 1 23 23 N 1.28764 * 109.51558 * 359.75040 * 22 3 2 24 24 N 1.34810 * 126.57813 * 180.02562 * 2 1 3 25 25 C 1.46503 * 126.59751 * 359.93099 * 24 2 1 26 26 C 1.53002 * 109.46801 * 239.99859 * 25 24 2 27 27 C 1.53000 * 109.46985 * 119.99810 * 25 24 2 28 28 H 1.09004 * 109.47290 * 269.95609 * 1 2 3 29 29 H 1.08997 * 109.47219 * 29.95995 * 1 2 3 30 30 H 1.09003 * 109.46951 * 149.96235 * 1 2 3 31 31 H 0.97004 * 119.99646 * 355.56512 * 6 4 3 32 32 H 1.08998 * 109.47050 * 59.99768 * 8 7 6 33 33 H 1.08996 * 109.46491 * 179.97438 * 8 7 6 34 34 H 1.08999 * 109.47035 * 299.99538 * 8 7 6 35 35 H 1.08993 * 109.47227 * 179.97438 * 9 7 6 36 36 H 1.09003 * 109.47216 * 300.00789 * 9 7 6 37 37 H 0.96998 * 119.99715 * 359.97438 * 10 9 7 38 38 H 0.97006 * 119.99712 * 180.02562 * 14 13 11 39 39 H 1.09001 * 115.54736 * 147.83034 * 19 7 6 40 40 H 1.09000 * 117.49696 * 359.97438 * 20 19 7 41 41 H 1.09001 * 117.50009 * 145.01450 * 20 19 7 42 42 H 1.09006 * 117.49698 * 214.97601 * 21 19 7 43 43 H 1.09002 * 117.50310 * 0.02562 * 21 19 7 44 44 H 1.08997 * 109.47007 * 359.97438 * 25 24 2 45 45 H 1.08995 * 109.47327 * 59.99761 * 26 25 24 46 46 H 1.09002 * 109.46724 * 179.97438 * 26 25 24 47 47 H 1.08997 * 109.47168 * 299.99691 * 26 25 24 48 48 H 1.08998 * 109.46893 * 179.97438 * 27 25 24 49 49 H 1.08993 * 109.47522 * 299.99886 * 27 25 24 50 50 H 1.09008 * 109.46969 * 60.00270 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8736 2.5027 0.0008 5 8 0.6859 2.7627 0.0010 6 7 2.7816 3.4988 0.0001 7 6 2.3401 4.8923 -0.0971 8 6 3.5438 5.8216 0.0721 9 6 1.3149 5.1803 1.0015 10 7 1.9273 4.9525 2.3128 11 6 1.1956 5.1485 3.4535 12 1 0.1669 5.4707 3.3865 13 6 1.7756 4.9321 4.6960 14 7 1.0721 5.1201 5.7923 15 14 3.5546 4.3742 4.8117 16 1 4.4426 5.5624 4.8806 17 1 3.7361 3.5492 6.0330 18 1 3.8993 3.5674 3.6136 19 6 1.7006 5.1302 -1.4666 20 6 1.5928 3.9333 -2.4135 21 6 2.6086 5.0433 -2.6949 22 7 3.5984 0.6789 -0.0006 23 7 3.6299 -0.6083 0.0044 24 7 2.3104 -1.0826 -0.0005 25 6 1.8864 -2.4849 0.0003 26 6 2.4304 -3.1814 1.2492 27 6 2.4279 -3.1821 -1.2493 28 1 -0.3634 -0.0008 1.0277 29 1 -0.3633 0.8903 -0.5132 30 1 -0.3633 -0.8897 -0.5144 31 1 3.7274 3.2929 0.0642 32 1 4.2741 5.6163 -0.7105 33 1 3.2153 6.8583 -0.0007 34 1 3.9993 5.6520 1.0478 35 1 0.9868 6.2172 0.9294 36 1 0.4575 4.5182 0.8810 37 1 2.8510 4.6628 2.3729 38 1 1.4776 4.9692 6.6606 39 1 0.8939 5.8630 -1.4878 40 1 1.9778 2.9764 -2.0609 41 1 0.7153 3.8788 -3.0579 42 1 2.3990 5.7186 -3.5245 43 1 3.6614 4.8161 -2.5275 44 1 0.7976 -2.5352 0.0018 45 1 2.0447 -2.6847 2.1394 46 1 2.1145 -4.2247 1.2500 47 1 3.5192 -3.1311 1.2481 48 1 2.1128 -4.2256 -1.2485 49 1 2.0404 -2.6859 -2.1390 50 1 3.5168 -3.1318 -1.2504 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495292060.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:17 Heat of formation + Delta-G solvation = 80.524078 kcal Electronic energy + Delta-G solvation = -30888.553044 eV Core-core repulsion = 26953.716942 eV Total energy + Delta-G solvation = -3934.836102 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.35404 -41.43491 -38.44881 -37.37388 -36.70780 -34.96262 -33.98897 -33.47887 -32.13936 -31.20823 -28.75102 -28.30574 -27.88201 -25.39176 -25.00922 -24.30324 -23.10636 -22.76616 -21.55259 -21.22103 -20.38948 -19.66731 -18.74682 -17.54473 -17.36303 -16.98709 -16.76628 -16.42092 -15.80674 -15.42982 -15.39177 -15.17058 -15.03367 -15.00139 -14.71324 -14.26666 -14.05180 -14.01244 -13.69669 -13.55342 -13.39677 -13.24653 -13.22182 -13.20794 -12.98241 -12.88384 -12.56632 -12.43354 -12.42206 -12.31491 -12.11991 -11.97561 -11.96053 -11.81901 -11.26714 -11.15555 -11.13490 -10.95192 -10.53496 -10.22266 -9.89923 -9.19536 -8.03019 -5.32778 0.11803 0.66277 1.04304 1.30873 1.34004 1.40353 2.15983 2.34946 2.44771 2.94456 3.17204 3.27652 3.31271 3.54084 3.55970 3.73236 3.78600 3.94333 3.95478 3.98164 4.03306 4.10664 4.27438 4.36242 4.50318 4.55851 4.57156 4.60194 4.64263 4.68918 4.72664 4.80740 4.81624 4.87027 4.92759 4.94525 5.07862 5.12210 5.14782 5.20040 5.23454 5.28953 5.31534 5.35160 5.56031 5.69549 5.78180 6.20950 6.53904 6.91888 7.08542 7.30187 7.85838 8.06364 9.19385 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.009469 B = 0.004697 C = 0.003611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2956.217104 B = 5959.302842 C = 7751.476621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.126 3.874 3 C -0.132 4.132 4 C 0.610 3.390 5 O -0.539 6.539 6 N -0.705 5.705 7 C 0.203 3.797 8 C -0.146 4.146 9 C 0.142 3.858 10 N -0.747 5.747 11 C -0.221 4.221 12 H 0.053 0.947 13 C -0.062 4.062 14 N -0.984 5.984 15 Si 0.947 3.053 16 H -0.270 1.270 17 H -0.297 1.297 18 H -0.264 1.264 19 C -0.157 4.157 20 C -0.171 4.171 21 C -0.152 4.152 22 N -0.226 5.226 23 N -0.086 5.086 24 N -0.345 5.345 25 C 0.130 3.870 26 C -0.161 4.161 27 C -0.156 4.156 28 H 0.091 0.909 29 H 0.098 0.902 30 H 0.113 0.887 31 H 0.406 0.594 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.047 0.953 35 H 0.028 0.972 36 H 0.045 0.955 37 H 0.362 0.638 38 H 0.256 0.744 39 H 0.111 0.889 40 H 0.076 0.924 41 H 0.094 0.906 42 H 0.112 0.888 43 H 0.098 0.902 44 H 0.139 0.861 45 H 0.050 0.950 46 H 0.115 0.885 47 H 0.057 0.943 48 H 0.113 0.887 49 H 0.061 0.939 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.125 -16.339 -21.192 26.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.013 4.013 3 C -0.272 4.272 4 C 0.396 3.604 5 O -0.416 6.416 6 N -0.356 5.356 7 C 0.118 3.882 8 C -0.204 4.204 9 C 0.015 3.985 10 N -0.393 5.393 11 C -0.352 4.352 12 H 0.071 0.929 13 C -0.253 4.253 14 N -0.636 5.636 15 Si 0.775 3.225 16 H -0.196 1.196 17 H -0.224 1.224 18 H -0.189 1.189 19 C -0.176 4.176 20 C -0.209 4.209 21 C -0.189 4.189 22 N -0.099 5.099 23 N -0.065 5.065 24 N -0.133 5.133 25 C 0.031 3.969 26 C -0.218 4.218 27 C -0.213 4.213 28 H 0.109 0.891 29 H 0.117 0.883 30 H 0.131 0.869 31 H 0.241 0.759 32 H 0.105 0.895 33 H 0.103 0.897 34 H 0.066 0.934 35 H 0.046 0.954 36 H 0.063 0.937 37 H 0.196 0.804 38 H 0.065 0.935 39 H 0.129 0.871 40 H 0.095 0.905 41 H 0.113 0.887 42 H 0.130 0.870 43 H 0.117 0.883 44 H 0.157 0.843 45 H 0.069 0.931 46 H 0.134 0.866 47 H 0.077 0.923 48 H 0.132 0.868 49 H 0.080 0.920 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.589 -16.529 -21.107 27.048 hybrid contribution 0.317 -0.052 1.084 1.131 sum 3.906 -16.581 -20.023 26.289 Atomic orbital electron populations 1.20797 0.82838 1.06383 1.05093 1.22306 0.97369 0.86063 0.95598 1.21455 0.89627 0.95952 1.20185 1.16676 0.85605 0.82778 0.75352 1.90710 1.16598 1.83374 1.50868 1.45816 1.09945 1.05545 1.74256 1.20042 0.94944 0.80129 0.93130 1.22005 0.96396 0.99821 1.02128 1.21264 0.95942 0.98086 0.83165 1.42564 1.12007 1.82981 1.01722 1.19027 0.95462 1.35749 0.84998 0.92863 1.25356 1.01994 1.03096 0.94820 1.69874 1.37978 1.58320 0.97430 0.85518 0.81515 0.78508 0.76927 1.19597 1.22434 1.18945 1.22425 1.03015 1.02639 0.89548 1.22907 1.01856 0.93529 1.02571 1.23052 0.96503 1.01257 0.98099 1.74544 1.19657 1.04909 1.10813 1.81754 0.98099 1.02900 1.23730 1.50928 1.05131 1.08423 1.48775 1.22203 1.02354 0.73164 0.99178 1.22172 1.02069 1.02579 0.95017 1.22146 1.02070 1.02422 0.94709 0.89061 0.88323 0.86872 0.75903 0.89453 0.89723 0.93371 0.95365 0.93746 0.80384 0.93478 0.87058 0.90547 0.88744 0.86971 0.88347 0.84345 0.93097 0.86611 0.92345 0.86800 0.92018 0.92359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.87 9.41 71.24 0.67 -1.20 16 2 C 0.13 3.31 7.02 41.72 0.29 3.60 16 3 C -0.13 -4.32 6.99 40.82 0.29 -4.03 16 4 C 0.61 21.53 4.85 86.69 0.42 21.95 16 5 O -0.54 -20.89 11.04 -4.01 -0.04 -20.94 16 6 N -0.70 -22.96 4.17 -426.04 -1.78 -24.73 16 7 C 0.20 6.45 0.55 3.60 0.00 6.46 16 8 C -0.15 -3.98 8.18 71.98 0.59 -3.39 16 9 C 0.14 6.01 4.81 86.38 0.42 6.43 16 10 N -0.75 -37.45 4.98 -343.44 -1.71 -39.16 16 11 C -0.22 -13.44 10.47 84.04 0.88 -12.56 16 12 H 0.05 3.55 8.06 -2.91 -0.02 3.53 16 13 C -0.06 -3.82 5.50 84.86 0.47 -3.36 16 14 N -0.98 -65.70 13.97 21.65 0.30 -65.40 16 15 Si 0.95 48.50 27.74 68.60 1.90 50.40 16 16 H -0.27 -13.16 7.11 99.48 0.71 -12.46 16 17 H -0.30 -15.39 7.11 99.48 0.71 -14.68 16 18 H -0.26 -12.76 6.52 99.48 0.65 -12.11 16 19 C -0.16 -4.18 4.89 -10.80 -0.05 -4.23 16 20 C -0.17 -4.35 8.62 30.62 0.26 -4.08 16 21 C -0.15 -3.12 9.68 30.62 0.30 -2.82 16 22 N -0.23 -7.46 12.04 -49.99 -0.60 -8.07 16 23 N -0.09 -2.52 13.67 37.02 0.51 -2.02 16 24 N -0.35 -7.92 3.28 -313.39 -1.03 -8.95 16 25 C 0.13 1.67 3.68 44.99 0.17 1.83 16 26 C -0.16 -2.00 9.46 71.98 0.68 -1.32 16 27 C -0.16 -1.50 9.47 71.98 0.68 -0.82 16 28 H 0.09 1.92 8.14 -2.38 -0.02 1.90 16 29 H 0.10 2.38 6.43 -2.39 -0.02 2.36 16 30 H 0.11 1.25 7.19 -2.39 -0.02 1.23 16 31 H 0.41 12.37 8.17 -92.71 -0.76 11.61 16 32 H 0.09 1.84 6.91 -2.39 -0.02 1.82 16 33 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.05 1.49 6.86 -2.39 -0.02 1.47 16 35 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.04 2.12 5.63 -2.39 -0.01 2.10 16 37 H 0.36 17.50 4.21 -92.71 -0.39 17.10 16 38 H 0.26 16.28 8.31 -92.70 -0.77 15.51 16 39 H 0.11 2.96 8.06 -2.39 -0.02 2.94 16 40 H 0.08 2.20 5.21 -2.39 -0.01 2.19 16 41 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 42 H 0.11 1.84 8.14 -2.38 -0.02 1.82 16 43 H 0.10 1.90 7.20 -2.39 -0.02 1.88 16 44 H 0.14 0.98 6.79 -2.39 -0.02 0.96 16 45 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 46 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 47 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 48 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 49 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 50 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 Total: -1.00 -80.95 393.81 3.37 -77.58 By element: Atomic # 1 Polarization: 39.04 SS G_CDS: -0.24 Total: 38.80 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: 6.06 Total: 2.48 kcal Atomic # 7 Polarization: -144.01 SS G_CDS: -4.31 Total: -148.32 kcal Atomic # 8 Polarization: -20.89 SS G_CDS: -0.04 Total: -20.94 kcal Atomic # 14 Polarization: 48.50 SS G_CDS: 1.90 Total: 50.40 kcal Total: -80.95 3.37 -77.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495292060.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.103 kcal (2) G-P(sol) polarization free energy of solvation -80.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds