Wall clock time and date at job start Tue Mar 31 2020 20:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47214 * 2 1 4 4 C 1.53004 * 109.47030 * 119.99793 * 2 1 3 5 5 C 1.52995 * 109.47200 * 65.14788 * 4 2 1 6 6 H 1.09005 * 109.47398 * 305.79823 * 5 4 2 7 7 C 1.53007 * 109.46850 * 65.79769 * 5 4 2 8 8 N 1.46497 * 109.47025 * 174.99993 * 7 5 4 9 9 C 1.36935 * 119.99994 * 180.02562 * 8 7 5 10 10 H 1.08007 * 119.99980 * 359.97438 * 9 8 7 11 11 C 1.38811 * 120.00229 * 179.97438 * 9 8 7 12 12 N 1.31627 * 119.99943 * 359.97438 * 11 9 8 13 13 Si 1.86806 * 120.00157 * 179.97438 * 11 9 8 14 14 H 1.48492 * 109.46851 * 60.00025 * 13 11 9 15 15 H 1.48501 * 109.47197 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47171 * 299.99987 * 13 11 9 17 17 N 1.46501 * 109.47320 * 185.79536 * 5 4 2 18 18 C 1.34777 * 120.00035 * 87.68082 * 17 5 4 19 19 O 1.21561 * 119.99731 * 5.12191 * 18 17 5 20 20 C 1.47819 * 119.99827 * 185.13453 * 18 17 5 21 21 C 1.39450 * 120.00023 * 179.71895 * 20 18 17 22 22 N 1.32024 * 119.98081 * 179.74583 * 21 20 18 23 23 C 1.32796 * 119.99052 * 0.53013 * 22 21 20 24 24 N 1.38399 * 119.99710 * 179.70793 * 23 22 21 25 25 C 1.46501 * 119.99801 * 185.01567 * 24 23 22 26 26 C 1.46496 * 120.00170 * 5.01664 * 24 23 22 27 27 C 1.39851 * 120.00261 * 359.71977 * 23 22 21 28 28 N 1.31478 * 120.02122 * 0.02562 * 27 23 22 29 29 H 1.08996 * 109.47236 * 294.44347 * 1 2 3 30 30 H 1.08996 * 109.47261 * 54.44901 * 1 2 3 31 31 H 1.09005 * 109.47254 * 174.44875 * 1 2 3 32 32 H 1.09000 * 109.47059 * 239.99733 * 2 1 3 33 33 H 1.08998 * 109.47728 * 179.97438 * 3 2 1 34 34 H 1.09004 * 109.47026 * 300.00195 * 3 2 1 35 35 H 1.09002 * 109.47003 * 59.99481 * 3 2 1 36 36 H 1.09000 * 109.46905 * 305.15330 * 4 2 1 37 37 H 1.08999 * 109.47048 * 185.15380 * 4 2 1 38 38 H 1.08990 * 109.47281 * 54.99660 * 7 5 4 39 39 H 1.09007 * 109.46875 * 294.99696 * 7 5 4 40 40 H 0.96999 * 120.00172 * 359.97438 * 8 7 5 41 41 H 0.96999 * 119.99640 * 179.97438 * 12 11 9 42 42 H 0.97004 * 120.00020 * 267.68037 * 17 5 4 43 43 H 1.07999 * 120.00958 * 359.97438 * 21 20 18 44 44 H 1.09002 * 109.46861 * 90.00011 * 25 24 23 45 45 H 1.09000 * 109.47338 * 209.99569 * 25 24 23 46 46 H 1.09003 * 109.47503 * 330.00245 * 25 24 23 47 47 H 1.09002 * 109.47352 * 90.00029 * 26 24 23 48 48 H 1.08998 * 109.47329 * 210.00024 * 26 24 23 49 49 H 1.09005 * 109.47324 * 330.00095 * 26 24 23 50 50 H 1.07998 * 119.98827 * 180.02562 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6384 -2.1962 1.1863 6 1 0.5616 -2.2735 1.0355 7 6 2.3663 -2.8737 0.0234 8 7 2.0754 -4.3094 0.0353 9 6 2.6214 -5.1266 -0.9182 10 1 3.2663 -4.7125 -1.6793 11 6 2.3462 -6.4871 -0.9067 12 7 1.5608 -6.9918 0.0211 13 14 3.0906 -7.6017 -2.2079 14 1 4.5719 -7.5346 -2.1285 15 1 2.6447 -8.9992 -1.9766 16 1 2.6464 -7.1572 -3.5534 17 7 2.0043 -2.8560 2.4422 18 6 1.1447 -2.8531 3.4802 19 8 0.0307 -2.3854 3.3456 20 6 1.5566 -3.4184 4.7824 21 6 0.6693 -3.4102 5.8582 22 7 1.0358 -3.9197 7.0197 23 6 2.2529 -4.4303 7.1661 24 7 2.6394 -4.9590 8.3853 25 6 4.0157 -5.4218 8.5798 26 6 1.6723 -5.0559 9.4814 27 6 3.1442 -4.4336 6.0884 28 7 2.7777 -3.9308 4.9301 29 1 -0.3633 0.4252 0.9355 30 1 -0.3633 0.5975 -0.8361 31 1 -0.3634 -1.0229 -0.0994 32 1 1.8933 -0.5139 -0.8900 33 1 3.1300 1.4426 0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.6032 -0.2634 2.1368 37 1 3.1261 -0.6420 1.2967 38 1 3.4402 -2.7197 0.1278 39 1 2.0271 -2.4420 -0.9183 40 1 1.4966 -4.6814 0.7190 41 1 1.3682 -7.9425 0.0289 42 1 2.8652 -3.2950 2.5266 43 1 -0.3188 -2.9904 5.7402 44 1 4.6271 -4.5984 8.9492 45 1 4.0264 -6.2358 9.3046 46 1 4.4179 -5.7753 7.6303 47 1 1.1624 -6.0181 9.4320 48 1 2.1936 -4.9695 10.4347 49 1 0.9411 -4.2523 9.3929 50 1 4.1338 -4.8493 6.2076 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496270677.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:58 Heat of formation + Delta-G solvation = 26.265015 kcal Electronic energy + Delta-G solvation = -29242.160732 eV Core-core repulsion = 25304.971780 eV Total energy + Delta-G solvation = -3937.188952 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.21857 -39.33974 -37.41590 -36.84189 -34.78351 -34.24038 -33.31296 -31.30350 -30.68414 -28.94874 -28.77763 -26.97111 -26.36753 -25.47205 -24.23879 -23.22152 -22.49554 -21.39132 -20.30212 -19.36272 -18.14063 -17.80416 -17.38161 -16.84985 -15.90678 -15.73550 -15.31687 -15.15524 -14.78559 -14.70969 -14.43522 -14.26129 -13.93655 -13.53446 -13.33985 -13.30830 -13.08777 -12.94903 -12.70618 -12.69136 -12.37388 -12.20244 -12.12243 -11.82891 -11.61959 -11.50464 -11.34229 -11.03054 -10.82361 -10.72676 -10.70800 -10.40676 -10.23470 -10.19552 -9.96600 -9.89446 -9.67798 -9.07241 -8.84182 -8.54433 -7.92446 -6.88338 -5.71236 -3.00715 0.66348 1.13471 2.46208 3.02170 3.46137 3.49410 3.50917 3.52009 3.96535 4.15038 4.18996 4.31954 4.62128 4.73435 4.85999 4.93270 4.99280 5.08087 5.10564 5.14091 5.21731 5.25572 5.30025 5.47367 5.51165 5.54967 5.61232 5.64504 5.78960 5.86306 5.90218 5.98614 6.05636 6.07888 6.19253 6.24729 6.28713 6.38641 6.42334 6.52398 6.57936 6.65835 6.80238 6.80482 7.04687 7.31883 7.71113 7.72801 8.03632 8.46265 8.60035 9.57877 10.15315 10.50596 11.50957 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.007533 B = 0.003634 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3716.326550 B = 7703.252583 C =10584.358576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.097 4.097 3 C -0.144 4.144 4 C -0.119 4.119 5 C 0.132 3.868 6 H 0.094 0.906 7 C 0.145 3.855 8 N -0.730 5.730 9 C -0.241 4.241 10 H 0.070 0.930 11 C -0.012 4.012 12 N -0.930 5.930 13 Si 0.906 3.094 14 H -0.286 1.286 15 H -0.292 1.292 16 H -0.286 1.286 17 N -0.691 5.691 18 C 0.583 3.417 19 O -0.545 6.545 20 C -0.038 4.038 21 C 0.167 3.833 22 N -0.509 5.509 23 C 0.367 3.633 24 N -0.602 5.602 25 C 0.088 3.912 26 C 0.093 3.907 27 C -0.005 4.005 28 N -0.368 5.368 29 H 0.053 0.947 30 H 0.049 0.951 31 H 0.061 0.939 32 H 0.078 0.922 33 H 0.052 0.948 34 H 0.052 0.948 35 H 0.050 0.950 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.023 0.977 39 H 0.036 0.964 40 H 0.386 0.614 41 H 0.255 0.745 42 H 0.412 0.588 43 H 0.181 0.819 44 H 0.059 0.941 45 H 0.077 0.923 46 H 0.077 0.923 47 H 0.053 0.947 48 H 0.067 0.933 49 H 0.082 0.918 50 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.853 10.089 17.308 20.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.116 4.116 3 C -0.201 4.201 4 C -0.158 4.158 5 C 0.028 3.972 6 H 0.112 0.888 7 C 0.017 3.983 8 N -0.375 5.375 9 C -0.372 4.372 10 H 0.088 0.912 11 C -0.208 4.208 12 N -0.579 5.579 13 Si 0.738 3.262 14 H -0.213 1.213 15 H -0.218 1.218 16 H -0.213 1.213 17 N -0.341 5.341 18 C 0.368 3.632 19 O -0.423 6.423 20 C -0.179 4.179 21 C 0.006 3.994 22 N -0.231 5.231 23 C 0.128 3.872 24 N -0.315 5.315 25 C -0.055 4.055 26 C -0.050 4.050 27 C -0.177 4.177 28 N -0.083 5.083 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.040 0.960 39 H 0.053 0.947 40 H 0.220 0.780 41 H 0.065 0.935 42 H 0.249 0.751 43 H 0.198 0.802 44 H 0.077 0.923 45 H 0.096 0.904 46 H 0.096 0.904 47 H 0.071 0.929 48 H 0.086 0.914 49 H 0.101 0.899 50 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 3.185 10.305 17.197 20.300 hybrid contribution 0.694 -1.232 -0.336 1.454 sum 3.880 9.073 16.861 19.536 Atomic orbital electron populations 1.21873 0.95139 1.02289 1.01210 1.21130 0.96134 0.95720 0.98581 1.21823 1.00713 0.96279 1.01318 1.21983 1.00885 0.94815 0.98083 1.21407 1.01696 0.90839 0.83267 0.88769 1.21005 0.96472 0.86496 0.94324 1.42340 1.58865 1.01056 1.35225 1.19164 1.23109 0.89127 1.05799 0.91245 1.24739 1.00335 0.96891 0.98836 1.69674 1.40565 1.12354 1.35272 0.86283 0.78628 0.80033 0.81301 1.21316 1.21780 1.21309 1.45772 1.20717 1.55353 1.12226 1.17446 0.84516 0.78522 0.82743 1.90757 1.19969 1.48143 1.83454 1.21778 0.92400 1.06687 0.97068 1.23484 0.99933 0.89938 0.86086 1.68087 1.15414 1.14620 1.25024 1.19604 0.90837 0.89549 0.87247 1.46157 1.11669 1.64068 1.09580 1.21863 0.80736 0.99766 1.03109 1.21686 0.92647 1.02702 0.87935 1.23186 1.01555 1.04874 0.88129 1.68161 1.15342 1.02327 1.22493 0.92823 0.93180 0.92000 0.90387 0.92899 0.92923 0.93053 0.91866 0.91836 0.95951 0.94681 0.77979 0.93549 0.75143 0.80188 0.92267 0.90420 0.90431 0.92884 0.91438 0.89937 0.81310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 8.82 37.16 0.33 -1.64 16 2 C -0.10 -1.26 2.80 -90.62 -0.25 -1.52 16 3 C -0.14 -1.57 9.19 37.16 0.34 -1.23 16 4 C -0.12 -1.71 4.46 -26.73 -0.12 -1.83 16 5 C 0.13 2.33 2.16 -67.93 -0.15 2.19 16 6 H 0.09 1.85 5.72 -51.93 -0.30 1.55 16 7 C 0.15 2.92 5.49 -4.04 -0.02 2.90 16 8 N -0.73 -18.70 5.43 -59.91 -0.33 -19.02 16 9 C -0.24 -6.78 9.99 -15.06 -0.15 -6.93 16 10 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 11 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 12 N -0.93 -28.69 13.06 55.49 0.72 -27.97 16 13 Si 0.91 22.64 29.55 -169.99 -5.02 17.62 16 14 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 15 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 16 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 17 N -0.69 -12.40 4.48 -54.75 -0.25 -12.64 16 18 C 0.58 10.65 7.79 -12.34 -0.10 10.55 16 19 O -0.55 -10.89 15.92 5.31 0.08 -10.80 16 20 C -0.04 -0.63 6.74 -82.88 -0.56 -1.19 16 21 C 0.17 2.45 10.76 -17.02 -0.18 2.27 16 22 N -0.51 -6.98 9.22 -11.95 -0.11 -7.09 16 23 C 0.37 4.52 7.37 -155.00 -1.14 3.38 16 24 N -0.60 -5.47 3.37 -189.51 -0.64 -6.11 16 25 C 0.09 0.49 10.28 59.85 0.62 1.10 16 26 C 0.09 0.69 10.50 59.84 0.63 1.32 16 27 C -0.01 -0.07 10.42 -17.10 -0.18 -0.24 16 28 N -0.37 -5.72 9.70 -9.45 -0.09 -5.81 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.93 6.72 -51.93 -0.35 0.58 16 32 H 0.08 1.07 6.48 -51.93 -0.34 0.73 16 33 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.04 0.70 6.72 -51.93 -0.35 0.35 16 40 H 0.39 10.70 7.33 -40.82 -0.30 10.40 16 41 H 0.25 7.64 8.31 -40.82 -0.34 7.30 16 42 H 0.41 7.49 7.98 -40.82 -0.33 7.16 16 43 H 0.18 2.41 7.63 -52.49 -0.40 2.01 16 44 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 45 H 0.08 0.30 8.07 -51.93 -0.42 -0.12 16 46 H 0.08 0.41 5.98 -51.93 -0.31 0.10 16 47 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 48 H 0.07 0.33 8.07 -51.93 -0.42 -0.09 16 49 H 0.08 0.71 7.30 -51.93 -0.38 0.33 16 50 H 0.17 1.60 6.02 -52.49 -0.32 1.28 16 LS Contribution 405.90 15.07 6.12 6.12 Total: -1.00 -34.07 405.90 -8.52 -42.58 By element: Atomic # 1 Polarization: 22.42 SS G_CDS: -7.97 Total: 14.44 kcal Atomic # 6 Polarization: 9.72 SS G_CDS: -1.03 Total: 8.69 kcal Atomic # 7 Polarization: -77.96 SS G_CDS: -0.69 Total: -78.65 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.08 Total: -10.80 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.07 -8.52 -42.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496270677.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.849 kcal (2) G-P(sol) polarization free energy of solvation -34.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds