Wall clock time and date at job start Tue Mar 31 2020 20:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47214 * 2 1 4 4 C 1.53004 * 109.47030 * 119.99793 * 2 1 3 5 5 C 1.52995 * 109.47200 * 65.14788 * 4 2 1 6 6 H 1.09005 * 109.47398 * 305.79823 * 5 4 2 7 7 C 1.53007 * 109.46850 * 65.79769 * 5 4 2 8 8 N 1.46497 * 109.47025 * 174.99993 * 7 5 4 9 9 C 1.36935 * 119.99994 * 180.02562 * 8 7 5 10 10 H 1.08007 * 119.99980 * 359.97438 * 9 8 7 11 11 C 1.38811 * 120.00229 * 179.97438 * 9 8 7 12 12 N 1.31627 * 119.99943 * 359.97438 * 11 9 8 13 13 Si 1.86806 * 120.00157 * 179.97438 * 11 9 8 14 14 H 1.48492 * 109.46851 * 60.00025 * 13 11 9 15 15 H 1.48501 * 109.47197 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47171 * 299.99987 * 13 11 9 17 17 N 1.46501 * 109.47320 * 185.79536 * 5 4 2 18 18 C 1.34777 * 120.00035 * 87.68082 * 17 5 4 19 19 O 1.21561 * 119.99731 * 5.12191 * 18 17 5 20 20 C 1.47819 * 119.99827 * 185.13453 * 18 17 5 21 21 C 1.39450 * 120.00023 * 179.71895 * 20 18 17 22 22 N 1.32024 * 119.98081 * 179.74583 * 21 20 18 23 23 C 1.32796 * 119.99052 * 0.53013 * 22 21 20 24 24 N 1.38399 * 119.99710 * 179.70793 * 23 22 21 25 25 C 1.46501 * 119.99801 * 185.01567 * 24 23 22 26 26 C 1.46496 * 120.00170 * 5.01664 * 24 23 22 27 27 C 1.39851 * 120.00261 * 359.71977 * 23 22 21 28 28 N 1.31478 * 120.02122 * 0.02562 * 27 23 22 29 29 H 1.08996 * 109.47236 * 294.44347 * 1 2 3 30 30 H 1.08996 * 109.47261 * 54.44901 * 1 2 3 31 31 H 1.09005 * 109.47254 * 174.44875 * 1 2 3 32 32 H 1.09000 * 109.47059 * 239.99733 * 2 1 3 33 33 H 1.08998 * 109.47728 * 179.97438 * 3 2 1 34 34 H 1.09004 * 109.47026 * 300.00195 * 3 2 1 35 35 H 1.09002 * 109.47003 * 59.99481 * 3 2 1 36 36 H 1.09000 * 109.46905 * 305.15330 * 4 2 1 37 37 H 1.08999 * 109.47048 * 185.15380 * 4 2 1 38 38 H 1.08990 * 109.47281 * 54.99660 * 7 5 4 39 39 H 1.09007 * 109.46875 * 294.99696 * 7 5 4 40 40 H 0.96999 * 120.00172 * 359.97438 * 8 7 5 41 41 H 0.96999 * 119.99640 * 179.97438 * 12 11 9 42 42 H 0.97004 * 120.00020 * 267.68037 * 17 5 4 43 43 H 1.07999 * 120.00958 * 359.97438 * 21 20 18 44 44 H 1.09002 * 109.46861 * 90.00011 * 25 24 23 45 45 H 1.09000 * 109.47338 * 209.99569 * 25 24 23 46 46 H 1.09003 * 109.47503 * 330.00245 * 25 24 23 47 47 H 1.09002 * 109.47352 * 90.00029 * 26 24 23 48 48 H 1.08998 * 109.47329 * 210.00024 * 26 24 23 49 49 H 1.09005 * 109.47324 * 330.00095 * 26 24 23 50 50 H 1.07998 * 119.98827 * 180.02562 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6384 -2.1962 1.1863 6 1 0.5616 -2.2735 1.0355 7 6 2.3663 -2.8737 0.0234 8 7 2.0754 -4.3094 0.0353 9 6 2.6214 -5.1266 -0.9182 10 1 3.2663 -4.7125 -1.6793 11 6 2.3462 -6.4871 -0.9067 12 7 1.5608 -6.9918 0.0211 13 14 3.0906 -7.6017 -2.2079 14 1 4.5719 -7.5346 -2.1285 15 1 2.6447 -8.9992 -1.9766 16 1 2.6464 -7.1572 -3.5534 17 7 2.0043 -2.8560 2.4422 18 6 1.1447 -2.8531 3.4802 19 8 0.0307 -2.3854 3.3456 20 6 1.5566 -3.4184 4.7824 21 6 0.6693 -3.4102 5.8582 22 7 1.0358 -3.9197 7.0197 23 6 2.2529 -4.4303 7.1661 24 7 2.6394 -4.9590 8.3853 25 6 4.0157 -5.4218 8.5798 26 6 1.6723 -5.0559 9.4814 27 6 3.1442 -4.4336 6.0884 28 7 2.7777 -3.9308 4.9301 29 1 -0.3633 0.4252 0.9355 30 1 -0.3633 0.5975 -0.8361 31 1 -0.3634 -1.0229 -0.0994 32 1 1.8933 -0.5139 -0.8900 33 1 3.1300 1.4426 0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.6032 -0.2634 2.1368 37 1 3.1261 -0.6420 1.2967 38 1 3.4402 -2.7197 0.1278 39 1 2.0271 -2.4420 -0.9183 40 1 1.4966 -4.6814 0.7190 41 1 1.3682 -7.9425 0.0289 42 1 2.8652 -3.2950 2.5266 43 1 -0.3188 -2.9904 5.7402 44 1 4.6271 -4.5984 8.9492 45 1 4.0264 -6.2358 9.3046 46 1 4.4179 -5.7753 7.6303 47 1 1.1624 -6.0181 9.4320 48 1 2.1936 -4.9695 10.4347 49 1 0.9411 -4.2523 9.3929 50 1 4.1338 -4.8493 6.2076 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496270677.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:57 Heat of formation + Delta-G solvation = 2.886913 kcal Electronic energy + Delta-G solvation = -29243.174483 eV Core-core repulsion = 25304.971780 eV Total energy + Delta-G solvation = -3938.202702 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.28066 -40.68908 -38.57180 -37.86963 -36.33535 -35.44649 -34.85798 -32.98223 -32.00289 -30.38000 -29.36872 -27.98075 -27.29715 -27.20240 -25.25721 -24.65768 -23.92907 -22.66132 -21.60476 -20.59792 -19.48513 -19.03877 -18.70914 -18.22474 -17.12250 -16.87327 -16.73708 -16.29064 -16.08883 -15.85817 -15.51676 -15.44994 -15.26118 -15.03393 -14.80195 -14.51094 -14.35703 -14.20515 -13.77691 -13.43909 -13.36125 -13.30108 -13.15533 -12.93723 -12.92205 -12.71915 -12.62714 -12.50011 -12.42039 -12.24641 -12.01685 -11.89371 -11.75942 -11.56339 -11.35887 -11.25675 -11.13832 -10.90976 -10.18065 -9.96693 -8.99118 -8.79114 -7.92026 -5.22075 -0.43982 0.08214 1.47629 1.51286 1.57160 1.69672 1.74509 2.17719 2.57362 2.80697 3.08689 3.22397 3.36374 3.41724 3.73828 3.82909 3.97370 4.02391 4.09649 4.19992 4.22723 4.23685 4.36461 4.44217 4.48587 4.55178 4.60272 4.75348 4.77372 4.84513 4.90053 4.91775 4.92552 4.96797 5.01601 5.07027 5.08857 5.15538 5.18149 5.36737 5.49903 5.51434 5.54086 5.61277 5.65293 5.94783 6.27454 6.29217 6.53178 6.78169 7.19386 7.34409 8.08630 8.32698 9.31015 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.007533 B = 0.003634 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3716.326550 B = 7703.252583 C =10584.358576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.096 4.096 3 C -0.138 4.138 4 C -0.107 4.107 5 C 0.141 3.859 6 H 0.070 0.930 7 C 0.148 3.852 8 N -0.743 5.743 9 C -0.244 4.244 10 H 0.080 0.920 11 C -0.075 4.075 12 N -0.970 5.970 13 Si 0.975 3.025 14 H -0.275 1.275 15 H -0.298 1.298 16 H -0.278 1.278 17 N -0.692 5.692 18 C 0.580 3.420 19 O -0.574 6.574 20 C -0.073 4.073 21 C 0.170 3.830 22 N -0.522 5.522 23 C 0.368 3.632 24 N -0.592 5.592 25 C 0.077 3.923 26 C 0.087 3.913 27 C -0.002 4.002 28 N -0.388 5.388 29 H 0.051 0.949 30 H 0.067 0.933 31 H 0.036 0.964 32 H 0.073 0.927 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.054 0.946 36 H 0.059 0.941 37 H 0.076 0.924 38 H 0.034 0.966 39 H 0.043 0.957 40 H 0.372 0.628 41 H 0.249 0.751 42 H 0.411 0.589 43 H 0.183 0.817 44 H 0.076 0.924 45 H 0.101 0.899 46 H 0.081 0.919 47 H 0.056 0.944 48 H 0.100 0.900 49 H 0.068 0.932 50 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.036 10.445 18.274 21.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.115 4.115 3 C -0.196 4.196 4 C -0.146 4.146 5 C 0.036 3.964 6 H 0.088 0.912 7 C 0.021 3.979 8 N -0.385 5.385 9 C -0.375 4.375 10 H 0.098 0.902 11 C -0.267 4.267 12 N -0.621 5.621 13 Si 0.804 3.196 14 H -0.201 1.201 15 H -0.225 1.225 16 H -0.205 1.205 17 N -0.341 5.341 18 C 0.366 3.634 19 O -0.454 6.454 20 C -0.212 4.212 21 C 0.009 3.991 22 N -0.245 5.245 23 C 0.126 3.874 24 N -0.302 5.302 25 C -0.064 4.064 26 C -0.055 4.055 27 C -0.177 4.177 28 N -0.103 5.103 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.055 0.945 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.095 0.905 38 H 0.052 0.948 39 H 0.060 0.940 40 H 0.203 0.797 41 H 0.057 0.943 42 H 0.247 0.753 43 H 0.200 0.800 44 H 0.095 0.905 45 H 0.120 0.880 46 H 0.100 0.900 47 H 0.074 0.926 48 H 0.118 0.882 49 H 0.086 0.914 50 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 5.401 10.705 18.167 21.767 hybrid contribution 0.091 -1.382 -0.427 1.449 sum 5.493 9.322 17.740 20.779 Atomic orbital electron populations 1.21848 0.95589 1.01004 1.01859 1.21135 0.95752 0.97179 0.97391 1.21772 1.01236 0.94408 1.02151 1.21892 1.01601 0.92299 0.98760 1.21281 0.99906 0.92652 0.82517 0.91222 1.21138 0.97230 0.83858 0.95671 1.42528 1.58511 1.03088 1.34407 1.19619 1.22313 0.89687 1.05923 0.90215 1.25586 1.01401 0.98526 1.01199 1.69861 1.42616 1.12131 1.37480 0.85190 0.78207 0.77415 0.78792 1.20059 1.22495 1.20453 1.45769 1.20573 1.55486 1.12268 1.17780 0.84065 0.78032 0.83501 1.90718 1.20962 1.49565 1.84131 1.21447 0.93625 1.09587 0.96521 1.23491 0.99810 0.89695 0.86136 1.68151 1.16366 1.15639 1.24360 1.19916 0.90288 0.88734 0.88510 1.46616 1.13319 1.61762 1.08506 1.22209 0.78791 1.01221 1.04201 1.21858 0.92674 1.02292 0.88668 1.23737 1.02789 1.03839 0.87307 1.68082 1.15152 1.03043 1.24043 0.93006 0.91432 0.94485 0.90896 0.92026 0.91685 0.92665 0.92252 0.90533 0.94764 0.93966 0.79656 0.94254 0.75334 0.79966 0.90532 0.88004 0.90010 0.92567 0.88162 0.91365 0.78149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.90 8.82 71.98 0.63 -3.26 16 2 C -0.10 -2.42 2.80 -10.79 -0.03 -2.45 16 3 C -0.14 -2.74 9.19 71.98 0.66 -2.08 16 4 C -0.11 -3.05 4.46 30.59 0.14 -2.92 16 5 C 0.14 5.13 2.16 44.99 0.10 5.22 16 6 H 0.07 2.90 5.72 -2.38 -0.01 2.89 16 7 C 0.15 5.99 5.49 86.38 0.47 6.47 16 8 N -0.74 -38.83 5.43 -343.45 -1.87 -40.70 16 9 C -0.24 -13.78 9.99 84.03 0.84 -12.94 16 10 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 11 C -0.08 -4.39 5.50 84.86 0.47 -3.92 16 12 N -0.97 -61.30 13.06 21.65 0.28 -61.01 16 13 Si 0.98 46.78 29.55 68.60 2.03 48.81 16 14 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 15 H -0.30 -14.52 7.11 99.48 0.71 -13.82 16 16 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 17 N -0.69 -25.91 4.48 -445.42 -1.99 -27.90 16 18 C 0.58 22.40 7.79 86.78 0.68 23.08 16 19 O -0.57 -24.37 15.92 -3.91 -0.06 -24.44 16 20 C -0.07 -2.49 6.74 41.76 0.28 -2.21 16 21 C 0.17 5.20 10.76 84.96 0.91 6.12 16 22 N -0.52 -14.33 9.22 -191.73 -1.77 -16.09 16 23 C 0.37 8.64 7.37 133.32 0.98 9.62 16 24 N -0.59 -9.24 3.37 -753.49 -2.54 -11.78 16 25 C 0.08 0.58 10.28 127.77 1.31 1.89 16 26 C 0.09 1.08 10.50 127.77 1.34 2.42 16 27 C 0.00 -0.05 10.42 85.14 0.89 0.84 16 28 N -0.39 -12.24 9.70 -183.80 -1.78 -14.02 16 29 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.04 1.15 6.72 -2.38 -0.02 1.14 16 32 H 0.07 1.93 6.48 -2.39 -0.02 1.91 16 33 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 35 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.03 1.33 8.14 -2.39 -0.02 1.32 16 39 H 0.04 1.68 6.72 -2.38 -0.02 1.67 16 40 H 0.37 21.42 7.33 -92.71 -0.68 20.74 16 41 H 0.25 15.31 8.31 -92.71 -0.77 14.54 16 42 H 0.41 15.47 7.98 -92.71 -0.74 14.73 16 43 H 0.18 5.24 7.63 -2.91 -0.02 5.22 16 44 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 45 H 0.10 0.34 8.07 -2.39 -0.02 0.33 16 46 H 0.08 0.59 5.98 -2.39 -0.01 0.57 16 47 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 48 H 0.10 0.61 8.07 -2.39 -0.02 0.60 16 49 H 0.07 1.08 7.30 -2.38 -0.02 1.06 16 50 H 0.20 3.33 6.02 -2.91 -0.02 3.31 16 Total: -1.00 -75.42 405.90 1.51 -73.90 By element: Atomic # 1 Polarization: 47.82 SS G_CDS: -0.46 Total: 47.36 kcal Atomic # 6 Polarization: 16.20 SS G_CDS: 9.68 Total: 25.88 kcal Atomic # 7 Polarization: -161.84 SS G_CDS: -9.67 Total: -171.51 kcal Atomic # 8 Polarization: -24.37 SS G_CDS: -0.06 Total: -24.44 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.03 Total: 48.81 kcal Total: -75.42 1.51 -73.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496270677.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.788 kcal (2) G-P(sol) polarization free energy of solvation -75.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds