Wall clock time and date at job start Tue Mar 31 2020 20:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50700 * 119.99956 * 2 1 4 4 N 1.46504 * 109.47403 * 124.99783 * 3 2 1 5 5 C 1.34813 * 126.59626 * 124.99736 * 4 3 2 6 6 C 1.36592 * 106.83779 * 180.02562 * 5 4 3 7 7 C 1.47524 * 125.76785 * 180.02562 * 6 5 4 8 8 O 1.21601 * 120.00367 * 353.47504 * 7 6 5 9 9 N 1.34778 * 119.99985 * 173.47466 * 7 6 5 10 10 C 1.46491 * 120.00009 * 3.32440 * 9 7 6 11 11 C 1.46507 * 119.99877 * 183.32392 * 9 7 6 12 12 C 1.53003 * 109.46925 * 90.00137 * 11 9 7 13 13 C 1.52997 * 109.46727 * 180.02562 * 12 11 9 14 14 H 1.08998 * 109.47459 * 304.99579 * 13 12 11 15 15 N 1.46494 * 109.47475 * 64.99803 * 13 12 11 16 16 C 1.36939 * 120.00419 * 204.99653 * 15 13 12 17 17 H 1.07998 * 119.99607 * 0.02562 * 16 15 13 18 18 C 1.38810 * 120.00425 * 179.97438 * 16 15 13 19 19 N 1.31626 * 119.99889 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00115 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47075 * 60.00460 * 20 18 16 22 22 H 1.48497 * 109.47096 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.46985 * 300.00514 * 20 18 16 24 24 C 1.53005 * 109.47046 * 184.99905 * 13 12 11 25 25 C 1.53000 * 109.46842 * 304.99749 * 24 13 12 26 26 C 1.53001 * 109.46909 * 64.99768 * 24 13 12 27 27 N 1.34399 * 108.46007 * 0.02562 * 6 5 4 28 28 N 1.28761 * 109.52244 * 0.02562 * 27 6 5 29 29 H 1.07999 * 119.99882 * 0.02562 * 1 2 3 30 30 H 1.07998 * 119.99940 * 179.97438 * 1 2 3 31 31 H 1.07999 * 119.99882 * 179.97438 * 2 1 3 32 32 H 1.09003 * 109.47352 * 4.99571 * 3 2 1 33 33 H 1.09006 * 109.47075 * 244.99742 * 3 2 1 34 34 H 1.08002 * 126.57702 * 0.02562 * 5 4 3 35 35 H 1.08994 * 109.47594 * 84.10096 * 10 9 7 36 36 H 1.08999 * 109.47227 * 204.10560 * 10 9 7 37 37 H 1.09008 * 109.47362 * 324.10118 * 10 9 7 38 38 H 1.08997 * 109.46986 * 209.99992 * 11 9 7 39 39 H 1.08994 * 109.46965 * 330.00161 * 11 9 7 40 40 H 1.08997 * 109.47170 * 299.99742 * 12 11 9 41 41 H 1.08996 * 109.47201 * 59.99680 * 12 11 9 42 42 H 0.97000 * 120.00029 * 24.99685 * 15 13 12 43 43 H 0.96994 * 119.99685 * 179.97438 * 19 18 16 44 44 H 1.09002 * 109.47154 * 184.99606 * 24 13 12 45 45 H 1.09006 * 109.46951 * 60.00270 * 25 24 13 46 46 H 1.09005 * 109.46847 * 179.97438 * 25 24 13 47 47 H 1.08996 * 109.47519 * 299.99919 * 25 24 13 48 48 H 1.08993 * 109.47181 * 300.00092 * 26 24 13 49 49 H 1.08997 * 109.46980 * 60.00251 * 26 24 13 50 50 H 1.09006 * 109.46770 * 180.02562 * 26 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1315 5 6 4.3229 1.5498 1.0741 6 6 4.7900 1.4862 2.3562 7 6 6.1939 1.6655 2.7723 8 8 7.0677 1.7735 1.9336 9 7 6.5081 1.7095 4.0822 10 6 5.4668 1.5067 5.0924 11 6 7.8910 1.9603 4.4958 12 6 8.1106 3.4661 4.6548 13 6 9.5550 3.7280 5.0861 14 1 9.7732 3.1592 5.9899 15 7 10.4667 3.3141 4.0166 16 6 11.7566 2.9636 4.3139 17 1 12.1018 2.9919 5.3369 18 6 12.6203 2.5710 3.3007 19 7 12.1995 2.5360 2.0540 20 14 14.3798 2.0922 3.7064 21 1 14.3758 0.9385 4.6414 22 1 15.0907 1.7158 2.4582 23 1 15.0717 3.2422 4.3421 24 6 9.7411 5.2207 5.3657 25 6 9.3157 6.0266 4.1366 26 6 8.8809 5.6262 6.5642 27 7 3.7542 1.2327 3.1743 28 7 2.6731 1.1341 2.4819 29 1 -0.5400 0.9353 -0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3586 2.1317 0.0895 33 1 2.6213 1.4026 -0.9314 34 1 4.9064 1.7384 0.1851 35 1 5.3221 0.4388 5.2559 36 1 5.7698 1.9795 6.0266 37 1 4.5334 1.9510 4.7465 38 1 8.0817 1.4629 5.4467 39 1 8.5726 1.5716 3.7392 40 1 7.9199 3.9635 3.7039 41 1 7.4290 3.8548 5.4113 42 1 10.1566 3.2884 3.0979 43 1 12.8032 2.2620 1.3459 44 1 10.7896 5.4211 5.5865 45 1 8.2673 5.8263 3.9159 46 1 9.4479 7.0901 4.3360 47 1 9.9285 5.7378 3.2828 48 1 7.8326 5.4258 6.3434 49 1 9.1840 5.0520 7.4397 50 1 9.0132 6.6897 6.7631 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506477237.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:18 Heat of formation + Delta-G solvation = 100.786959 kcal Electronic energy + Delta-G solvation = -29218.812725 eV Core-core repulsion = 25284.855287 eV Total energy + Delta-G solvation = -3933.957438 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 6.01 seconds Orbital eigenvalues (eV) -42.35697 -39.35071 -37.33050 -36.37453 -35.27693 -33.13400 -33.05404 -31.49599 -30.64136 -29.39537 -27.52008 -26.61312 -26.51624 -25.27900 -23.51044 -22.63531 -22.46667 -21.68427 -20.71229 -19.47443 -18.27377 -17.69453 -17.06023 -16.35776 -16.20083 -15.96630 -15.66830 -15.22302 -14.75803 -14.64161 -14.33370 -13.97712 -13.79537 -13.63126 -13.27178 -13.01173 -12.88793 -12.78837 -12.72994 -12.51080 -12.21223 -11.97032 -11.95464 -11.70935 -11.40429 -11.08743 -10.94567 -10.85966 -10.76936 -10.57906 -10.39489 -10.26389 -10.16649 -10.11776 -10.02374 -9.84460 -9.51076 -9.44191 -9.36970 -8.76514 -8.29165 -6.79114 -5.61938 -2.90326 0.98087 1.31083 1.70498 2.12631 3.20543 3.44462 3.51390 3.55862 3.56800 3.96749 4.10527 4.20925 4.46478 4.58547 4.70085 4.84969 4.86006 5.14367 5.25874 5.36119 5.42081 5.49868 5.55798 5.58394 5.70305 5.78636 5.80384 5.91743 5.92492 5.96246 6.04069 6.07576 6.13843 6.19010 6.19941 6.30381 6.41553 6.42448 6.54032 6.54739 6.78979 6.87241 6.93398 7.00921 7.17373 7.22713 7.60149 7.81733 7.82604 8.40671 8.55929 9.66997 10.27085 10.62109 11.59858 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014514 B = 0.002565 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.721023 B =10915.104551 C =11948.519562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.180 4.180 3 C 0.151 3.849 4 N -0.360 5.360 5 C 0.091 3.909 6 C -0.092 4.092 7 C 0.592 3.408 8 O -0.521 6.521 9 N -0.600 5.600 10 C 0.075 3.925 11 C 0.118 3.882 12 C -0.136 4.136 13 C 0.186 3.814 14 H 0.045 0.955 15 N -0.719 5.719 16 C -0.236 4.236 17 H 0.067 0.933 18 C -0.013 4.013 19 N -0.928 5.928 20 Si 0.902 3.098 21 H -0.288 1.288 22 H -0.293 1.293 23 H -0.288 1.288 24 C -0.115 4.115 25 C -0.136 4.136 26 C -0.144 4.144 27 N -0.205 5.205 28 N -0.068 5.068 29 H 0.103 0.897 30 H 0.108 0.892 31 H 0.118 0.882 32 H 0.101 0.899 33 H 0.114 0.886 34 H 0.205 0.795 35 H 0.053 0.947 36 H 0.066 0.934 37 H 0.092 0.908 38 H 0.072 0.928 39 H 0.101 0.899 40 H 0.066 0.934 41 H 0.058 0.942 42 H 0.387 0.613 43 H 0.254 0.746 44 H 0.068 0.932 45 H 0.043 0.957 46 H 0.034 0.966 47 H 0.064 0.936 48 H 0.049 0.951 49 H 0.047 0.953 50 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.715 -1.248 -1.507 24.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.199 4.199 3 C 0.031 3.969 4 N -0.146 5.146 5 C -0.065 4.065 6 C -0.231 4.231 7 C 0.377 3.623 8 O -0.396 6.396 9 N -0.332 5.332 10 C -0.068 4.068 11 C -0.003 4.003 12 C -0.175 4.175 13 C 0.075 3.925 14 H 0.063 0.937 15 N -0.360 5.360 16 C -0.368 4.368 17 H 0.085 0.915 18 C -0.209 4.209 19 N -0.576 5.576 20 Si 0.733 3.267 21 H -0.214 1.214 22 H -0.219 1.219 23 H -0.215 1.215 24 C -0.136 4.136 25 C -0.194 4.194 26 C -0.202 4.202 27 N -0.079 5.079 28 N -0.048 5.048 29 H 0.121 0.879 30 H 0.126 0.874 31 H 0.136 0.864 32 H 0.120 0.880 33 H 0.132 0.868 34 H 0.222 0.778 35 H 0.071 0.929 36 H 0.085 0.915 37 H 0.110 0.890 38 H 0.091 0.909 39 H 0.120 0.880 40 H 0.085 0.915 41 H 0.077 0.923 42 H 0.221 0.779 43 H 0.064 0.936 44 H 0.087 0.913 45 H 0.062 0.938 46 H 0.053 0.947 47 H 0.083 0.917 48 H 0.068 0.932 49 H 0.066 0.934 50 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -25.207 -1.542 -0.935 25.271 hybrid contribution 1.564 -0.067 -0.869 1.791 sum -23.643 -1.608 -1.804 23.766 Atomic orbital electron populations 1.23987 0.95457 1.02809 0.96498 1.22880 0.96368 0.97450 1.03188 1.21104 0.91965 0.98110 0.85763 1.50495 1.06658 1.48366 1.09045 1.23444 0.84437 0.97796 1.00849 1.21613 0.95591 1.15483 0.90371 1.16859 0.84945 0.77513 0.83005 1.90917 1.47666 1.50083 1.50937 1.47736 1.10367 1.69971 1.05155 1.22109 0.91832 1.01482 0.91424 1.21663 0.80394 0.96735 1.01557 1.22245 0.98109 0.95440 1.01699 1.20167 0.88013 0.91820 0.92522 0.93676 1.42466 1.08991 1.79281 1.05288 1.19156 0.87757 1.36855 0.92990 0.91460 1.24713 0.98001 1.02750 0.95424 1.69674 1.35049 1.54155 0.98726 0.86355 0.85427 0.78235 0.76662 1.21448 1.21887 1.21505 1.21788 0.99424 0.98564 0.93834 1.21730 1.00530 0.97819 0.99298 1.21889 0.99877 0.99962 0.98490 1.74765 0.96479 1.10471 1.26165 1.81980 1.17669 1.21779 0.83395 0.87907 0.87404 0.86412 0.88041 0.86765 0.77787 0.92850 0.91541 0.89006 0.90940 0.88037 0.91543 0.92321 0.77902 0.93630 0.91314 0.93769 0.94693 0.91671 0.93207 0.93382 0.93944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.64 14.32 29.01 0.42 -0.22 16 2 C -0.18 -0.96 9.72 -36.03 -0.35 -1.31 16 3 C 0.15 0.77 6.98 -5.19 -0.04 0.73 16 4 N -0.36 -3.38 3.68 -62.24 -0.23 -3.61 16 5 C 0.09 0.98 11.28 -16.84 -0.19 0.79 16 6 C -0.09 -1.28 6.69 -83.55 -0.56 -1.84 16 7 C 0.59 10.05 7.67 -12.47 -0.10 9.95 16 8 O -0.52 -10.77 16.43 5.28 0.09 -10.68 16 9 N -0.60 -9.44 2.87 -182.81 -0.53 -9.97 16 10 C 0.08 0.93 9.59 59.84 0.57 1.51 16 11 C 0.12 2.06 5.29 -4.04 -0.02 2.04 16 12 C -0.14 -2.35 4.28 -26.73 -0.11 -2.47 16 13 C 0.19 3.68 2.06 -67.93 -0.14 3.54 16 14 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 15 N -0.72 -17.94 4.03 -53.43 -0.22 -18.15 16 16 C -0.24 -6.55 9.93 -15.06 -0.15 -6.70 16 17 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 18 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 19 N -0.93 -28.65 13.06 55.49 0.72 -27.93 16 20 Si 0.90 22.83 29.55 -169.99 -5.02 17.81 16 21 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 22 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 23 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 24 C -0.11 -2.09 2.88 -90.62 -0.26 -2.35 16 25 C -0.14 -2.45 8.59 37.16 0.32 -2.14 16 26 C -0.14 -2.12 8.95 37.16 0.33 -1.78 16 27 N -0.20 -2.76 8.81 32.85 0.29 -2.47 16 28 N -0.07 -0.84 13.63 60.35 0.82 -0.02 16 29 H 0.10 0.32 7.84 -52.49 -0.41 -0.09 16 30 H 0.11 0.38 8.06 -52.49 -0.42 -0.05 16 31 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 32 H 0.10 0.38 7.79 -51.93 -0.40 -0.03 16 33 H 0.11 0.29 8.08 -51.93 -0.42 -0.13 16 34 H 0.21 1.67 8.06 -52.49 -0.42 1.25 16 35 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.72 8.03 -51.93 -0.42 0.30 16 37 H 0.09 1.15 5.31 -51.92 -0.28 0.87 16 38 H 0.07 1.16 8.07 -51.93 -0.42 0.74 16 39 H 0.10 2.21 6.99 -51.93 -0.36 1.84 16 40 H 0.07 1.27 6.65 -51.93 -0.35 0.92 16 41 H 0.06 0.88 6.35 -51.93 -0.33 0.56 16 42 H 0.39 10.62 7.80 -40.82 -0.32 10.30 16 43 H 0.25 7.65 8.31 -40.82 -0.34 7.32 16 44 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 45 H 0.04 0.74 6.46 -51.93 -0.34 0.41 16 46 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.06 1.37 7.75 -51.93 -0.40 0.96 16 48 H 0.05 0.68 6.46 -51.93 -0.34 0.34 16 49 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 50 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 409.79 15.07 6.18 6.18 Total: -1.00 -34.41 409.79 -6.39 -40.80 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: -8.12 Total: 8.75 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: -0.37 Total: -0.71 kcal Atomic # 7 Polarization: -63.01 SS G_CDS: 0.87 Total: -62.14 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.09 Total: -10.68 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.02 Total: 17.81 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -34.41 -6.39 -40.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506477237.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.588 kcal (2) G-P(sol) polarization free energy of solvation -34.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.01 seconds